cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK067339     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0285800 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 9,895,721 -  9,898,382  ( - );   2,662(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 9,895,721 -  9,896,084 ( - );   364 (bp)
Exon 2 Location 9,896,615 -  9,896,798 ( - );   184 (bp)
Exon 3 Location 9,896,883 -  9,897,215 ( - );   333 (bp)
Exon 4 Location 9,897,347 -  9,897,484 ( - );   138 (bp)
Exon 5 Location 9,897,599 -  9,897,728 ( - );   130 (bp)
Exon 6 Location 9,898,043 -  9,898,382 ( - );   340 (bp)

Related Rice IDs
RAP Locus RAP ID KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI		 UniProt
Accession No		 UniProt Entry
Name
Os03g0285800 Os03t0285800-01 202853 J013102O17 2652 LOC_Os03g17700.1 AK067339 4780 AP008209.2 255674134 BAF11684.1 113548241 NC_008396.2 297602023 NM_001056305.1 115452338 NP_001049770.1 115452339 Q10N20 MPK5_ORYSJ


Chromosome: 3 ,  position: 9,895,721 - 9,898,382 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 agcgatcaca aattgtgcca attcacaaac cgccgccccc ttcccttttt aatagctgcc 
000061 ttcgcctctc gtcccctctc cctcatcgcc ttgctgtctc tgcgaatcga gagagagtca 
000121 gataaggtcg ttaattaggt ttgtcaattc ggctgcttgc ggcgagagaa gaggaggagg 
000181 gattagggat ggacggggcg ccggtggcgg agttcaggcc gacgatgacg cacggcggcc 
000241 ggtacctgct ctacgacatc ttcgggaaca agttcgaggt gacgaacaag taccagccgc 
000301 ccatcatgcc cattggccgc ggcgcctacg ggatcgtctg gtacgcacac gccgattcct 
000361 cttttccctg cctgccctag atttcttgcc atgttaatcg atccttcgtc agttcctttt 
000421 gattgattga tacgcgtcga tgagtggttg agaggatgga gtaattggga ccaattacta 
000481 atcccctgtt tttagagcag ggatgattaa tttgattctg cagctgagct gagcaggttt 
000541 ttagttagtt attatcagcg tagtggttga ctggttggca tgtctattcg gagtactttt 
000601 tggtgctttg tttttctaat ttctcttctg aattccgtgt gctggtgcct acagctccgt 
000661 gatgaacttt gagacgaggg agatggtggc gataaagaag atcgccaacg cgttcaacaa 
000721 cgacatggac gccaagcgca cgctccggga gatcaagctc ctcaggcacc tcgaccacga 
000781 gaacgtaagc tcctattagg ctataactag tagtggaact gaagactacg tggttaatta 
000841 cgcagcggcg tgtacctgaa tttggtaatc tgtcactaac tgctacaaca acacgcagat 
000901 cataggcatc agggatgtga tcccgccgcc gatccctcag gcgttcaacg acgtctacat 
000961 cgccacggag ctcatggaca ccgacctcca tcacatcatc cgctccaacc aagaactgtc 
001021 agaagagcac tgccaggtga gtgaactgtg agcgaatgat tttttttttc atatatcgat 
001081 caatcacaca atcaatcgat agctgcagaa acatcaattc gatcttcctc atgtcacgta 
001141 tgtatgattg cggccgtgtt gttgcagtat ttcctgtacc agatcctgcg ggggctcaag 
001201 tacatccact cggcgaacgt gatccaccgc gacctgaagc cgagcaacct gctgctgaac 
001261 gccaactgcg acctcaagat ctgcgacttc gggctggcgc ggccgtcgtc ggagagcgac 
001321 atgatgacgg agtacgtggt cacccggtgg taccgcgcgc cggagctgct gctcaactcc 
001381 accgactact ccgccgccat cgacgtctgg tccgtcggct gcatcttcat ggagctcatc 
001441 aaccgccagc cgctcttccc cggcagggac cacatgcacc agatgcgcct catcaccgag 
001501 gtgagtgaat taatcagcgt agacactcac acgctgaatt atgctacctg ttcttgggtc 
001561 tcatcgtgtt gggtccatga tcaggtgatc gggacgccga cggacgacga gctggggttc 
001621 atacggaacg aggacgcgag gaagtacatg aggcacctgc cgcagtaccc gcgccggacg 
001681 ttcgcgagca tgttcccgcg ggtgcagccc gccgcgctcg acctcatcga gaggatgctc 
001741 accttcaacc cgctgcagag aatcacaggt gcgtgcagag ggctaaccca actcgtgctt 
001801 gctgctctgc ttctaaacta ctaaaattag tacccaaaat tacaagtact aatttactag 
001861 ctgagtgtgt actgtgtaca gtaccctgtt cagtatgcta ctgcatgtgt gctagtatag 
001921 cactagtatt ttctatcgca ctgcttcttt gactggcgta tatagccgcc ggtgtttgac 
001981 ccatccccaa ctatttttat gtttacttgc cgtgaacagt cggtctcttg atctcgtcac 
002041 tttaaaggga acccgtcttt tagctgtctt tggggctacc aacgattttg catgttgctc 
002101 aagtgacgat aaaagactgt gttactttac tgtgtagtag tgcagaagta gaataggtag 
002161 cacgtttgca gcctctgtcg gttagagttc agtagacctt agttttgaaa cactagacaa 
002221 tagcagagtg gtttagaagg atgacagaag atttgtgctt aagaactata tctcactgac 
002281 atcgttcttg acatgcagtt gaggaggcgc tcgatcatcc ttacctagag agattgcacg 
002341 acatcgccga tgagcccatc tgcctggagc ccttctcctt cgacttcgag cagaaggctc 
002401 taaacgagga ccaaatgaag cagctgatct tcaacgaagc gatcgagatg aacccaaaca 
002461 tccggtacta gattgaatca ccatggaaat gagatcccgt ctatacctgc tttgtacata 
002521 tgatcaagat tgagagccgg gtagactgaa cattgcattt gtttgtttgt tgatgttcga 
002581 aacccacatt ctctgcaagt tgtggctgct ttgtatgata tatggtacta tgttcgaata 
002641 aaagggtttg gaactttgga tt

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
BJ482023 bah63a17 532
more... (Total Hit Count: 3 )
Hit Wheat ESTs
Acc. No. Clone Name Length
CJ874870 whthls17i15 762
more... (Total Hit Count: 53 )
/rice/oryzabase