cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK067118     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os03g0644400 ( IRGSP 1.0 )
RAP - Chromosome No. 3
RAP - Location, Length 25,661,156 -  25,665,352  ( - );   4,197(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 25,661,156 -  25,661,828 ( - );   673 (bp)
Exon 2 Location 25,661,968 -  25,662,183 ( - );   216 (bp)
Exon 3 Location 25,662,261 -  25,662,385 ( - );   125 (bp)
Exon 4 Location 25,662,496 -  25,662,685 ( - );   190 (bp)
Exon 5 Location 25,662,881 -  25,662,975 ( - );   95 (bp)
Exon 6 Location 25,663,294 -  25,663,518 ( - );   225 (bp)
Exon 7 Location 25,664,004 -  25,664,187 ( - );   184 (bp)
Exon 8 Location 25,664,784 -  25,665,352 ( - );   569 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os03g0644400 Os03t0644400-01 J013096E03 202612 J013096E03 1624 LOC_Os03g44230.1 AK067118 7923 AP008209.2 255674134 BAF12673.1 113549230 NC_008396.2 297602023 NM_001057294.1 115454316 NP_001050759.1 115454317


Chromosome: 3 ,  position: 25,661,156 - 25,665,352 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gaacggatgg ctcggcccgg gacttatcgc ggggggaggg ggatcggatc ctaacgggaa 
000061 agacgggaaa atctccggca tcgccgccaa tttctcccgc acgccgcggc gctgctcccc 
000121 ctcccctacc cacacactcc accaccatca ccaccaccac caccacccgc acgcgcgccg 
000181 caacaacctc actactgcct atcctaccta tatggcacgg ggtgtgggtc cctccgattc 
000241 ccccgccacg ccactcctct cccctcccca cgcaaccgcc ttcctccgcc gccgccgacg 
000301 ccgacgccga cgccgacccc ttctcccaat ctgcggattc cagcgggggt cccccccccc 
000361 tcccaccggc ggcgcccggt ggtcgtggtc gtgggggagg ggagtcaacg aacgagccga 
000421 gccgcccgct tgccggagct ctctatctat ctctctatct ctatctctat ccctccagat 
000481 tccctcctcc atcgaatctc tgatatttgg agggagcgac tcgacgcagc atcgcatcgt 
000541 aaggaaggtc ccctccactg tcgatggatg tgaggtttct ttccaatttt ttttcttcct 
000601 ttattattaa ttattaatct ctctctcgct cacaagcata ccatgcgttt catgtgccat 
000661 tatgcctcat cagtttgata tgatatacgg tatggatggt ctctagtctc tgtcatcaat 
000721 cgatcgcatt tactacatag atatggaact aacatggaag aaaaagttgt cagattcttt 
000781 tcctccaatc tgtattagga aaaataattt gtcatcagtt gatcgcattt aatacataga 
000841 tatggaacta acagggaaga aaaagatgtc accagttgat tcttttcctc caatctgtat 
000901 taggaaaaat aagttgtcat cagttaatta tttgtatttt tcgtaataag tgtgtgtgtg 
000961 gaaaggacat tcctccaatt tgtattagga aaaataagtt gtcatcagtt aattatttgt 
001021 atttttcgta ataaatgtgt gtgtggaaag gacagggaag aaaagaactt gcaaaagtgt 
001081 aattgcaagg caattgattt gatgctactt ttgtgggggt gctcctgttt atttatatat 
001141 atgcctattc ttttgcacta agcagcagca ccagctcgac gaggagaacc agagagccgc 
001201 gctcttccac tcctctgccc catcttcctc tttgggagct gacggggagg aggagaggga 
001261 gactgtgccg ctgctgtcct gcaagatggc cgacgataaa tctgacactg tccaggtctc 
001321 cgaggatacg gcgcaccaga ttagcattgg taatttttca tcaaccgttc tttgttaatg 
001381 tctaggcgaa tgtcttatga atgatcgtgt gatgtgttct ctcctttctt ttcataattg 
001441 cgatccttaa gtcttcctag cctcctagtt gaacaccacg gcgcctgcat atatttctcc 
001501 tttcttttgt cctcataacc tatcggacaa atagacactg gttgttcctt agccacagat 
001561 aggtaaagaa aaagaagatc tgattcatat tcatcatctt gaggcctaat tcattaaaag 
001621 agctggaaca tgaagcaatt tccttttgtc tttaatttct tacaattttc agttgtggct 
001681 cttcttactg cttttagctg ttccctctga aaatataaac ttgatgcaga gccacagacc 
001741 atgggttgtc attttggctt aaaaaaaaca ttgaccttat gtggtgcgta tgattattga 
001801 ttgacttacg aaacactttt tttttcactt tcagatccct ggtatcaagt tggattcatt 
001861 ctgacaaccg gggtgaatag tgcatatgtt ctgggatatt ctgcatcaat catggtccct 
001921 ttaggctgga ttggtgggac atgtggcttg attctagctg ctgcaatatc catgtatgca 
001981 aatgctcttc ttgctcacct tcatgaagtt ggtggcaaac gccatatcag atacagagat 
002041 cttgctgggc acatatatgg taaatattaa tacactcagt tccctcattt ggcaaatatt 
002101 cgataaggca tagtttcatt ctctttcctt tttttcttta actgtgcatg tttcttaatc 
002161 attcccctca caccatattt tttgtatttc atactatttg aatttctttc cttttttttc 
002221 tttaactgtg catgtttctt aatcattccc ctcacaccat attttttgta tttcatacta 
002281 tttgaattgg ttatgaaaaa cttgctctgg gttttgttta ttaataaaaa aatggtaatt 
002341 ttgcttttgc agtatgactg aattaccttt atttcaggta gaaaaatgta ttcgcttaca 
002401 tgggctctgc aatatgttaa tctattcatg atcaacactg gccttatcat tttagctggt 
002461 caagccctga aggtacagag caatcaccat cacccaactc ttcttatggt gaaatgccgt 
002521 gttatttcat aacaagagtt gggcccttct attcattatc tcagtatcta agtttagatt 
002581 tttttttctt tttgggaata cacatgttga atttcactgg gaaatctttt tccctcctgg 
002641 actcatttgt gaacttcctt tctgcaggca atatatgtat tatttaggga cgatggagtt 
002701 ctaaagctac cctactgcat agcattatct gggtttgtct gtgctctttt tgcctttgga 
002761 atcccttatc tgtctgctct caggatttgg ttgggattat caacagtttt cagtctcatc 
002821 tatataatga tagcatttgt catgtcgctt agagatggta ttatactttg gttccttgtt 
002881 catctgtcct taatttcttg tgcatttcca tttgttggca taacaagcta ctcgtacaaa 
002941 aatttcatta ctggttttct tttgaaggga ttaccacacc tgcaaaggat tatactattc 
003001 ctggatcaca ttcagataga atcttcacta cgataggtgc tgtagcaaac cttgtgttcg 
003061 cttacaacac tggaatgctc ccagaaattc aagttagtca gtttagtaca tatggccagt 
003121 gactagttta tttaccatga tattacctta tgtgtattat atattgcagg caaccataag 
003181 gcctcctgtg gtcaagaata tggagaaggc tctatggttc cagttcactg ttggttcgtt 
003241 gcctctttat gctgtcacct ttatggggta ttgggcgtac gggtcctcaa catcaagcta 
003301 tctactgaat agtgtgaagg gaccaatttg gataaaaact gtggcaaatt tatcggcgtt 
003361 tcttcagact gtcatagcat tacatgtatg tccaccttac tatatatcta gtccaagcta 
003421 cattattgtc aattagtaat ggttatttct ttttcaattt gatttgttta taatcaaatt 
003481 gacactcaat gaagtaacat gaggtcgttt tctatatatg ccagatattt gcaagcccaa 
003541 tgtacgaatt cttggacaca agattcggca gtggacatgg tggtcctttt gcaatccaca 
003601 acataatgtt cagagtgggt gtcagaggag gctacctgac cgtcaacacc ttggtggccg 
003661 cgatgctccc cttccttggc gacttcatga gcctgacggg tgcactcagc acctttcccc 
003721 tgacattcgt tcttgcaaat cacatgtacc tcacggtgaa gcagaacaag atgtccatct 
003781 tcaggaaatg ctggcactgg ctgaacgttg ttggcttcag ctgcttgtcc gtcgcagctg 
003841 cggttgctgc ggtgaggcta atcacggtcg actacagtac ataccatttg tttgctgata 
003901 tgtgaggctg gaaagtgcaa gcatgcagcc ctggatcagc tgtaaattcg tcctcttctt 
003961 ttttattttt ttggttaggg gatgcatgta ggtcgataga atgatggaga ttgcaataaa 
004021 taatttggct aaaatgttgt ccagatttgg ttgtttgagg tgcaagatgt ttgcctcaaa 
004081 acgtaccgct atggttcact ttttaagaac tgtactgcta cctctgtttg cggagatttt 
004141 tgtctgcagg catgcaggat gaatattatt caagtgctct aatagtttga tctcagc

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Barley ESTs
Acc. No. Clone Name Length
AK250463 FLbaf77c23 2014
more... (Total Hit Count: 6 )
Hit Wheat ESTs
Acc. No. Clone Name Length
BJ233102 whe3f10 696
more... (Total Hit Count: 3 )
/rice/oryzabase