cDNA ( Data source : RAP-DB )

cDNA Detail

jump to Other species ESTs data to homologous Rice cDNA
General information
RAP - Accession No. AK065697     Link to RAP-DB ( IRGSP 1.0 )
RAP ID Os01g0606900 ( IRGSP 1.0 )
RAP - Chromosome No. 1
RAP - Location, Length 25,542,198 -  25,543,920  ( + ) ;   1,723(bp)

Exon (Data source : RAP-DB)
Exon 1 Location 25,542,198 -  25,542,526 ( + ) ;   329 (bp)
Exon 2 Location 25,542,647 -  25,542,734 ( + ) ;   88 (bp)
Exon 3 Location 25,542,852 -  25,542,934 ( + ) ;   83 (bp)
Exon 4 Location 25,543,057 -  25,543,113 ( + ) ;   57 (bp)
Exon 5 Location 25,543,264 -  25,543,920 ( + ) ;   657 (bp)

Related Rice IDs
RAP Locus RAP ID RAP Annotated
Accession No		 KOME
Clone ID		 KOME
Clone Name		 KOME
Cluster ID		 MSU ID cDNA
Accession No		 RiceXPro
FeatureNum		 Genomic Nucleotide
Accession No		 Genomic
Nucleotide GI		 Genomic Protein
Accession No		 Genomic
Protein GI		 RefSeq Genomic
Nucleotide
Accession No		 RefSeq Genomic
Nucleotide GI		 RefSeq RNA
Nucleotide
Accession No		 RefSeq RNA
Nucleotide GI		 RefSeq Genomic Protein
Accession No		 RefSeq Genomic
Protein GI
Os01g0606900 Os01t0606900-01 J013037L21 201076 J013037L21 1022 LOC_Os01g42190.1 AK065697 33571 AP008207.2 255672756 BAF05441.1 113533058 NC_008394.4 297598437 NM_001050062.1 115438385 NP_001043527.1 115438386


Chromosome: 1 ,  position: 25,542,198 - 25,543,920 bp

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Sequence (Data source : RAP-DB)
Nucleotide
Fasta Format 
000001 gaggcctctc ctcgacgtcg cccgtacatt ctccagccgc gccatcgttc tttcacttca 
000061 cccccaatgt tgttctagcc cccgcgccac ccaagataga tagattcatc gcgatcgatc 
000121 gagcgggagg tagagactag agagggatag tgtgtgctgc tgctgctgcg tcggagtagg 
000181 atatcgcgat cgatcggtcg atcgggcgga tgcagcaggg gagggggagg aggaggatga 
000241 tgcagggatc gtcgtactac gccgtgctcg gcgttcaccc cggcgcgtcc gccgccgaga 
000301 tacgcgccgc gtaccaccgc ctcgccatgg tgagtgcgat tctgcaacac acccggtctg 
000361 gttttcctgt ggtttggttt cgccggagtt ggaagcagag catctgagca tatatggcgc 
000421 tgacgtgatt tgggatttgg tgcgtgcaga agtggcaccc ggacaagatc accagcggcc 
000481 gcgtggatgc ggaggaagcc aagagcaggt tccagcaggt gcacgaggcg taccaaggta 
000541 atcaaaaagc acaaatcctc tgtttctcgt gcgtgtcctc tgcaatctgc atcatcttct 
000601 tcggacgaat ttctgaatac gaattttttt tttgtctgtc gcgtgcgaat gcagtgttgt 
000661 ctgacgagaa gaggagggcg ctctacgact caggcatgta cgacccgctc gacgacgacc 
000721 aggaggagga cgtcgaggta atccactaag catcaaactt ttctcatgcg tgctttgctt 
000781 ctttttcttt tttttttttg atattgcgat ggtttttgtg atctaacttg ctgatttgct 
000841 taccttgcga caccaccagg gcttccacga cttcctccag gagatggtgt ccctcatggc 
000901 cacggtagga agagaggtaa ttaaatttga tgaccgattt aagccgacac gagcgattcg 
000961 atcacaaatc agctatactc tagacccaaa tgcagcgaaa agagaaaaat tcaaattaca 
001021 aaaatttccg atgcgtctaa aacctgtgtt aatccacttc gtgcaggagc ccgtgtactg 
001081 cctggacgag ctccgctcca tgctggacgg gatgatgcag gatttcgcct cgtccgaatt 
001141 gccttcgccc agcggcggct tcttcgccgg cgcgccctcc tcgccgttcg ccgacaccgg 
001201 cgccgcgcag cagcagcgcg gggtcggctc cgcctccgcg cgcgcgcacg ctcatcccca 
001261 ggtggtcggc aactctgcct gcctcagccg gatggccttc tccagctact gagatcaatt 
001321 tttgccagcg gccgcaacat catcacctgc atagattagc tagcctcgtc gacatcgagt 
001381 gagagtgagt agtcggcggc ggtgcggcgc cgccccctgc tgccgatgag gcgcgtcagc 
001441 gtcgtgatct catgaaggtg catgcagaaa ggtggcaagg cagggcactg gaacaaagta 
001501 tttctgttta ttttcttgtc ttgtttcgat gggatgggct ctgcagcgag aactgtctat 
001561 actgttccga gtgtaccgtg acaatgtgat atcacgggac tgtttgcctt tgtacagttt 
001621 catgataaac aatctgaagt agtagtaatg aactagtgac aatgatgatg atgatcgtcg 
001681 ttgttccgtt ctgttaggat gatgggacga tccctttggt gtg

Notice:The following homologous wheat ESTs and barley ESTs are BLAST results with E-values less than e-20.

Hit Wheat ESTs
Acc. No. Clone Name Length
CJ639104 whec15l19 618
more... (Total Hit Count: 2 )
/rice/oryzabase