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BLAST
BLAST with BLASTScope
Output format :
Blastscope (2.2.8)
BLAST default format (2.2.24)
Program
:
blastn (DNA query vs. DNA database)
tblastx (DNA query[translated into protein] vs. DNA database[translated into protein])
tblastn (Protein query vs. DNA database[translated into protein])
Database :
Mouse B6 Genome (DNA) [3699 sequences]
Msm BAC end Sequences (DNA) [352498 sequences]
Msm BAC end Sequences Revised (DNA) [352498 sequences]
cDNA clones:hma:HMI/Ms (DNA) [20870 sequences]
cDNA clones:kja:KJR/Ms (DNA) [19198 sequences]
cDNA clones:msa:MSM/Ms (DNA) [18883 sequences]
cDNA clones:pga:PGN2/Ms (DNA) [19223 sequences]
Please specify the sequence data required.
File Upload
:
or COPY & PASTE
:
The following options will be set up if necessary.
Options for BLAST Search
Filter
ON
OFF
Expect
Matrix
PAM30
PAM70
BLOSUM80
BLOSUM62
BLOSUM45
Query Genetic Codes
Standard (1)
Vertebrate Mitochondrial (2)
Yeast Mitochondrial (3)
Mold Mitochondrial; ... (4)
Invertebrate Mitochondrial (5)
Ciliate Nuclear; ... (6)
Echinoderm Mitochondrial (9)
Euplotid Nuclear (10)
Bacterial (11)
Alternative Yeast Nuclear (12)
Ascidian Mitochondrial (13)
Flatworm Mitochondrial (14)
Blepharisma Macronuclear (15)
Frame shift penalty
for blastx
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
25
30
50
1000
No OOF
Other options:
Options for BLASTScope
Sort Hits order by :
Hit Number
bit score
query from
definition
alignment length
Number of Hits :
All Hits
Limit :
Hits
Number of HSPs :
All HSPs
Limit :
HSPs
Limit results by alignment length :
>
Limit results by range of query sequence :
-
Image width :
