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- strain
- polymorphism
- chromosome
- locus
- MGI Position(cM)
- Position(bp)
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Map
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Polymorphism
(B6, 129/SVJ)
Chr. No.:
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
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NIG Mouse Genome Database
Last Update:
Feb 26, 2018
Version:
2.8.18
Locus table
Locus Name
D1Mit228
Chromosome
1
MGI Position (cM)
22.2
Position (cM)
22.59
Ensembl Chromosome
1
Position (bp)(Length)(Chr.)(
OLD
)
42640356-42640484 (129) (Chr.1), 42640145-42640280 (136) (Chr.1)
Position (
GRCm38
)
42695810-42695938 (129) (Chr.1)
Contact person
Yoshiaki KIKKAWA
Sequence
Complete Sequence
Polymorphism table
Polymorphism
CAST
>
JF1
=
MSM
>
NJL
=
SWR
=
SWN
=
BLG2
>
B6
=
SM
>
NC
=
SK/Cam
=
CBA
=
PGN2
=
129
=
DBA
>
A/J
Strains / Fragments (bp)
B6
SM
SWR
129
A/J
CBA
DBA
NC
PGN2
SK/Cam
NJL
BLG2
SWN
MSM
JF1
CAST
129
129
130
128
127
128
128
128
128
128
130
130
130
131
131
132
PCR condition
PCR table
MgCl2 (mM)
1.5
Taq polymerase
AmpliTaq Gold
Thermal cycler
GeneAmp 9700
PCR buffer
AmpliTaq Gold buffer
denature
anneal
extension
cycle
extension step (72 c)
pcr
cycle 1
c
94
55
72
40
min
0.5
0.5
1
cycle 2
c
min
cycle 3
c
min
remarks
Electrophoresis image
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National Institute of Genetics