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About
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- strain
- polymorphism
- chromosome
- locus
- MGI Position(cM)
- Position(bp)
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Map
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Polymorphism
(B6, 129/SVJ)
Chr. No.:
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
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NIG Mouse Genome Database
Last Update:
Feb 26, 2018
Version:
2.8.18
Locus table
Locus Name
D16Mit38
Chromosome
16
MGI Position (cM)
28.5
Position (cM)
28.04
Ensembl Chromosome
16
Position (bp)(Length)(Chr.)(
OLD
)
41313166-41313348 (183) (Chr.16), 41313287-41313408 (122) (Chr.16)
Position (
GRCm38
)
41393834-41394016 (183) (Chr.16)
Contact person
Yoshiaki KIKKAWA
Sequence
Complete Sequence
Polymorphism table
Polymorphism
JF1
>
NJL
>
SWN
>
A/J
>
DBA
>
MSM
=
B6
>
PGN2
>
SK/Cam
>
129
=
SWR
=
SM
=
BLG2
=
CAST
>
CBA
>
NC
Strains / Fragments (bp)
B6
SM
SWR
129
A/J
CBA
DBA
NC
PGN2
SK/Cam
NJL
BLG2
SWN
MSM
JF1
CAST
188
182
182
182
190
181
189
180
184
183
195
182
191
188
196
182
PCR condition
PCR table
MgCl2 (mM)
1.5
Taq polymerase
AmpliTaq Gold
Thermal cycler
GeneAmp 9700
PCR buffer
AmpliTaq Gold buffer
denature
anneal
extension
cycle
extension step (72 c)
pcr
cycle 1
c
94
55
72
40
min
0.5
0.5
1
cycle 2
c
min
cycle 3
c
min
remarks
Electrophoresis image
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National Institute of Genetics