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About
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- strain
- polymorphism
- chromosome
- locus
- MGI Position(cM)
- Position(bp)
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Map
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Polymorphism
(B6, 129/SVJ)
Chr. No.:
1
2
3
4
5
6
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8
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14
15
16
17
18
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NIG Mouse Genome Database
Last Update:
Feb 26, 2018
Version:
2.8.18
Locus table
Locus Name
D17Mit128
Chromosome
17
MGI Position (cM)
48.5
Position (cM)
44.04
Ensembl Chromosome
17
Position (bp)(Length)(Chr.)(
OLD
)
80380980-80381125 (146) (Chr.17), 80381101-80381210 (110) (Chr.17)
Position (
GRCm38
)
80472654-80472799 (146) (Chr.17)
Contact person
Yoshiaki KIKKAWA
Sequence
Complete Sequence
Polymorphism table
Polymorphism
BLG2
>
CAST
>
PGN2
>
JF1
>
CBA
>
DBA
=
SK/Cam
>
NC
=
A/J
=
129
=
SM
>
B6
>
SWR
>
NJL
>
MSM
>
SWN
Strains / Fragments (bp)
B6
SM
SWR
129
A/J
CBA
DBA
NC
PGN2
SK/Cam
NJL
BLG2
SWN
MSM
JF1
CAST
144
145
143
145
145
147
146
145
151
146
141
159
134
135
148
157
PCR condition
PCR table
MgCl2 (mM)
1.5
Taq polymerase
AmpliTaq Gold
Thermal cycler
GeneAmp 9700
PCR buffer
AmpliTaq Gold buffer
denature
anneal
extension
cycle
extension step (72 c)
pcr
cycle 1
c
94
55
72
40
min
0.5
0.5
1
cycle 2
c
min
cycle 3
c
min
remarks
Electrophoresis image
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National Institute of Genetics