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About
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- strain
- polymorphism
- chromosome
- locus
- MGI Position(cM)
- Position(bp)
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Map
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Polymorphism
(B6, 129/SVJ)
Chr. No.:
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
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NIG Mouse Genome Database
Last Update:
Feb 26, 2018
Version:
2.8.18
Locus table
Locus Name
D6Mit129
Chromosome
6
MGI Position (cM)
34.45
Position (cM)
24.6
Ensembl Chromosome
6
Position (bp)(Length)(Chr.)(
OLD
)
82621906-82622045 (140) (Chr.6), 82621966-82622178 (213) (Chr.6)
Position (
GRCm38
)
82656248-82656387 (140) (Chr.6)
Contact person
Yoshiaki KIKKAWA
Sequence
Complete Sequence
Polymorphism table
Polymorphism
NJL
>
MSM
>
JF1
>
SWN
>
CAST
>
SK/Cam
>
129
>
NC
=
A/J
=
SWR
>
PGN2
>
BLG2
>
SM
=
B6
>
CBA
=
DBA
Strains / Fragments (bp)
B6
SM
SWR
129
A/J
CBA
DBA
NC
PGN2
SK/Cam
NJL
BLG2
SWN
MSM
JF1
CAST
139
139
155
157
155
138
138
155
153
159
180
145
176
179
177
172
PCR condition
PCR table
MgCl2 (mM)
1.5
Taq polymerase
AmpliTaq Gold
Thermal cycler
GeneAmp 9700
PCR buffer
AmpliTaq Gold buffer
denature
anneal
extension
cycle
extension step (72 c)
pcr
cycle 1
c
94
55
72
40
min
0.5
0.5
1
cycle 2
c
min
cycle 3
c
min
remarks
Electrophoresis image
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National Institute of Genetics