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About
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- strain
- polymorphism
- chromosome
- locus
- MGI Position(cM)
- Position(bp)
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Map
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Polymorphism
(B6, 129/SVJ)
Chr. No.:
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
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NIG Mouse Genome Database
Last Update:
Feb 26, 2018
Version:
2.8.18
Locus table
Locus Name
D11Mit20
Chromosome
11
MGI Position (cM)
20.0
Position (cM)
20.17
Ensembl Chromosome
11
Position (bp)(Length)(Chr.)(
OLD
)
44582634-44582747 (114) (Chr.11), 44582482-44582642 (161) (Chr.11)
Position (
GRCm38
)
44739211-44739324 (114) (Chr.11)
Contact person
Yoshiaki KIKKAWA
Sequence
Complete Sequence
Polymorphism table
Polymorphism
JF1
>
SWN
>
MSM
>
BLG2
>
A/J
>
129
>
CBA
>
NJL
>
SM
>
DBA
>
NC
>
PGN2
=
SWR
>
SK/Cam
>
CAST
>
B6
Strains / Fragments (bp)
B6
SM
SWR
129
A/J
CBA
DBA
NC
PGN2
SK/Cam
NJL
BLG2
SWN
MSM
JF1
CAST
113
135
131
147
148
145
134
132
131
124
144
158
172
168
176
123
PCR condition
PCR table
MgCl2 (mM)
1.5
Taq polymerase
AmpliTaq Gold
Thermal cycler
GeneAmp 9700
PCR buffer
AmpliTaq Gold buffer
denature
anneal
extension
cycle
extension step (72 c)
pcr
cycle 1
c
94
55
72
40
min
0.5
0.5
1
cycle 2
c
min
cycle 3
c
min
remarks
Electrophoresis image
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National Institute of Genetics