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About
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- strain
- polymorphism
- chromosome
- locus
- MGI Position(cM)
- Position(bp)
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Map
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Polymorphism
(B6, 129/SVJ)
Chr. No.:
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
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NIG Mouse Genome Database
Last Update:
Feb 26, 2018
Version:
2.8.18
Locus table
Locus Name
D4Mit201
Chromosome
4
MGI Position (cM)
58.0
Position (cM)
50.07
Ensembl Chromosome
4
Position (bp)(Length)(Chr.)(
OLD
)
121599762-121599919 (158) (Chr.4), 121599663-121599774 (112) (Chr.4)
Position (
GRCm38
)
122026727-122026884 (150) (Chr.4)
Contact person
Yoshiaki KIKKAWA
Sequence
Complete Sequence
Polymorphism table
Polymorphism
JF1
=
MSM
>
SM
>
PGN2
>
SWR
>
129
>
B6
>
A/J
Strains / Fragments (bp)
B6
SM
SWR
129
A/J
PGN2
MSM
JF1
162
190
177
172
153
179
200
200
PCR condition
PCR table
MgCl2 (mM)
1.5
Taq polymerase
AmpliTaq Gold
Thermal cycler
GeneAmp 9700
PCR buffer
AmpliTaq Gold buffer
denature
anneal
extension
cycle
extension step (72 c)
pcr
cycle 1
c
94
55
72
40
min
0.5
0.5
1
cycle 2
c
min
cycle 3
c
min
remarks
Electrophoresis image
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National Institute of Genetics