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About
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- strain
- polymorphism
- chromosome
- locus
- MGI Position(cM)
- Position(bp)
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Map
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Polymorphism
(B6, 129/SVJ)
Chr. No.:
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
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NIG Mouse Genome Database
Last Update:
Feb 26, 2018
Version:
2.8.18
Locus table
Locus Name
D15Mit6
Chromosome
15
MGI Position (cM)
13.7
Position (cM)
16.89
Ensembl Chromosome
15
Position (bp)(Length)(Chr.)(
OLD
)
38489230-38489356 (127) (Chr.15), 38489131-38489244 (114) (Chr.15)
Position (
GRCm38
)
38544641-38544767 (127) (Chr.15)
Contact person
Yoshiaki KIKKAWA
Sequence
Complete Sequence
Polymorphism table
Polymorphism
CBA
=
DBA
>
A/J
=
SM
>
NC/Nga
=
B6
>
NC
>
NC/jic
=
SWR
>
SK/Cam
=
PGN2
>
SWN
>
CAST
=
129
=
BLG2
=
JF1
=
MSM
>
NJL
Strains / Fragments (bp)
B6
SM
SWR
129
A/J
CBA
DBA
NC/Nga
NC/jic
NC
PGN2
SK/Cam
NJL
BLG2
SWN
MSM
JF1
CAST
129
131
126
104
131
133
133
129
126
128
112
112
102
104
105
104
104
104
PCR condition
PCR table
MgCl2 (mM)
1.5
Taq polymerase
AmpliTaq Gold
Thermal cycler
GeneAmp 9700
PCR buffer
AmpliTaq Gold buffer
denature
anneal
extension
cycle
extension step (72 c)
pcr
cycle 1
c
94
55
72
40
min
0.5
0.5
1
cycle 2
c
min
cycle 3
c
min
remarks
Electrophoresis image
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National Institute of Genetics