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- strain
- polymorphism
- chromosome
- locus
- MGI Position(cM)
- Position(bp)
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Map
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Polymorphism
(B6, 129/SVJ)
Chr. No.:
1
2
3
4
5
6
7
8
9
10
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12
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14
15
16
17
18
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NIG Mouse Genome Database
Last Update:
Feb 26, 2018
Version:
2.8.18
Locus table
Locus Name
D16Mit171
Chromosome
16
MGI Position (cM)
36.0
Position (cM)
33.6
Ensembl Chromosome
16
Position (bp)(Length)(Chr.)(
OLD
)
56219816-56219938 (123) (Chr.16), 56219927-56220056 (130) (Chr.16)
Position (
GRCm38
)
56294865-56294987 (122) (Chr.16)
Contact person
Yoshiaki KIKKAWA
Sequence
Complete Sequence
Polymorphism table
Polymorphism
MSM
>
JF1
>
SM
>
PGN2
>
SWR
>
B6
>
129
>
A/J
Strains / Fragments (bp)
B6
SM
SWR
129
A/J
PGN2
MSM
JF1
124
179
128
114
113
130
186
181
PCR condition
PCR table
MgCl2 (mM)
1.5
Taq polymerase
AmpliTaq Gold
Thermal cycler
GeneAmp 9700
PCR buffer
AmpliTaq Gold buffer
denature
anneal
extension
cycle
extension step (72 c)
pcr
cycle 1
c
94
55
72
40
min
0.5
0.5
1
cycle 2
c
min
cycle 3
c
min
remarks
Electrophoresis image
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National Institute of Genetics