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Worldwide Rice Science Information Desk
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information Atlas
Virtual Crops
http://www-plb.ucdavis.edu/labs/rost/Rice/ricehome.html
Category : Anatomy/Development
information Oryzabase
http://www.shigen.nig.ac.jp/rice/oryzabaseV4/devstageineachorgan/search
Category : Anatomy/Development
information Plant Ontology -Japanese
Plant Ontology - Japanese version
http://www.shigen.nig.ac.jp/plantontology/ja/go.cgi
Category : Anatomy/Development
information Plant Ontology
http://www.plantontology.org/
Category : Anatomy/Development
material Full length cDNA (KOME)
http://www.dna.affrc.go.jp/misc/dna/idx_shinseiJ.html
Category : DNA clones
material RFLP/YAC
http://www.dna.affrc.go.jp/misc/dna/idx_shinseiJ.html
Category : DNA clones
material BAC clones (AGCoL)
http://www.genome.arizona.edu/orders/
Category : DNA clones
material cDNA/RFLP/PAC/BAC
NIAS DNA Bank
http://www.dna.affrc.go.jp/distribution/distdna.html
Category : DNA clones
information 11 Wild genomes (OMAP)
http://www.omap.org/
Category : Diversity
information SNPs (PGC)
http://www.pgcdna.co.jp/
Category : Diversity
information Cereal Knowledge Bank
http://www.knowledgebank.irri.org/
Category : Education/Labs
information Oryzabase
http://www.shigen.nig.ac.jp/rice/oryzabaseV4/education/morphology
Category : Education/Labs
information Transposon
RetrOryza
Rice LTR Retrotransposon database
http://www.retroryza.fr/
Category : Functional Genomics
information OryzaTagLine
OryzaTagLine
http://urgi.versailles.inra.fr/OryzaTagLine/
Category : Functional Genomics
information GreenPhyl
GreenPhyl
http://www.greenphyl.org/cgi-bin/index.cgi
Category : Functional Genomics
information RiceFox
RiceFox
Rice full-length cDNA over-expressed Arabidopsis mutant database
http://ricefox.psc.riken.jp/index.php?contetns=top
Category : Functional Genomics
information Insertional Mutants
Insertional Mutants(TRIM)
Taiwan Rice Insertional Mutants Database
http://trim.sinica.edu.tw/
Category : Functional Genomics
information OryGenesDB
OryGenesDB
http://orygenesdb.cirad.fr/
Category : Functional Genomics
information RAP
PGF-DB
Plant Gene Family Database
http://green.dna.affrc.go.jp/PGF-DB/
Category : Genes/Proteins
information Keio University
OryzaPG
rice proteome database
http://oryzapg.iab.keio.ac.jp/
Category : Genes/Proteins
information Gene subumission
http://www.shigen.nig.ac.jp/rice/oryzabase_submission/gene_nomenclature/
Category : Genes/Proteins
information Oryza_Express
Oryza_Express
Gene Expression Database for Rice
http://riceball.lab.nig.ac.jp/oryzaexpress/annot.php
Category : Genes/Proteins
information Oryzabase
Oryzabase
http://www.shigen.nig.ac.jp/rice/oryzabaseV4/gene/search
Category : Genes/Proteins
information cDNA (KOME)
http://cdna01.dna.affrc.go.jp/cDNA/
Category : Genes/Proteins
information Gramene
Gramene
http://www.gramene.org/qtl/
Category : Genes/Proteins
information Q-TARO
Q-TARO
http://qtaro.abr.affrc.go.jp/
Category : Genes/Proteins
information Gramene
Gramene
http://www.gramene.org/
Category : Genes/Proteins
information MSU
Rice Gene Families
Community Annotation site
http://rice.plantbiology.msu.edu/annotation_community_families.shtml
Category : Genes/Proteins
information RiceXPro
RiceXPro
Rice Expression Profile Database
http://ricexpro.dna.affrc.go.jp/index.html
Category : Genes/Proteins
information DFCI Gene Index
http://compbio.dfci.harvard.edu/tgi/
Category : Genes/Proteins
information MSU
http://rice.plantbiology.msu.edu/
Category : Genome Sequences
information RAP
http://rapdb.dna.affrc.go.jp/
Category : Genome Sequences
information B.distachyon genome(DOE)
http://www.brachypodium.org/
Category : Genome Sequences
information IRGSP
http://rgp.dna.affrc.go.jp/IRGSP/
Category : Genome Sequences
information APGC
APGC
http://genome.sinica.edu.tw/
Category : Genome Sequences
information BGI-RISe
http://rise.genomics.org.cn/rice/index2.jsp
Category : Genome Sequences
information Oryzabase
http://shigen.lab.nig.ac.jp/rice/oryzabase/comparative/comparative.jsp
Category : Maps
information GenBank
http://www.ncbi.nlm.nih.gov/mapview/map_search.cgi?taxid=4530
Category : Maps
information Gramene
http://www.gramene.org/Oryza_sativa/index.html
Category : Maps
information Oryzabase
http://shigen.lab.nig.ac.jp/rice/oryzabase/genome//genomeTop.jsp
Category : Maps
information RAP-DB
RAP-DB
http://rapdb.dna.affrc.go.jp/viewer/gbrowse_syn/rap/?search_src=build5;name=chr01%3A1..50000
Category : Maps
information Gramene
http://www.gramene.org/db/cmap/viewer?changeMenu=1
Category : Maps
information RAP
http://rapdb.dna.affrc.go.jp
Category : Maps
information Linkage Maps (Oryzabase)
http://shigen.lab.nig.ac.jp/rice/oryzabase/maps/map.jsp
Category : Maps
information MSU
http://rice.plantbiology.msu.edu/
Category : Maps
information Gibberellins
Gibberellins
http://www.plant-hormones.info/gibberellins.htm
Category : Metabolites
material Experimental lines (Oryzabase)
http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/all/list
Category : Mutants /RIL/BIL/DHL
material BIL/DHL (RGRC)
http://www.rgrc.dna.affrc.go.jp/jp/stock.html
Category : Mutants /RIL/BIL/DHL
material Germplasm (IRRI)
http://www.iris.irri.org/
Category : Mutants /RIL/BIL/DHL
material Tos Lines (RGRC)
http://www.rgrc.dna.affrc.go.jp/stock.html
Category : Mutants /RIL/BIL/DHL
information Kinome: RKD
RKD
http://rkd.ucdavis.edu/
Category : Others
information Proteome: RPD
RPD
http://cdna01.dna.affrc.go.jp/RPD/main_en.html
Category : Others
information Pathway: RiceCyc
RiceCyc
Web-based tool for viewing biochemical pathways in rice
http://www.gramene.org/pathway/
Category : Others
information Promoter: ppdb
ppdb
http://ppdb.agr.gifu-u.ac.jp
Category : Others
information Organellome: PODB
PODB
http://podb.nibb.ac.jp/Organellome/
Category : Others
information Xanthobase
Xanthobase
Xanthomonas oryzae pv. oryzae genome database
http://microbe.dna.affrc.go.jp/Xanthomonas/
Category : Pathogenic bacterium
material Germplasm (IRRI)
http://www.irri.org/GRC/GRChome/Home.htm
Category : Wild / Landrace
material Wild and Landrace (NIAS)
NIAS Genebank-Plant
http://www.gene.affrc.go.jp/plant/
Category : Wild / Landrace
material Landrace (Kyushu Univ.)
http://www.shigen.nig.ac.jp/rice/rice-kyushu/htdocs/main.html
Category : Wild / Landrace
material Germplasm (USDA)
GSOR
http://www.ars.usda.gov/Main/docs.htm?docid=8318
Category : Wild / Landrace
material Wild Rice (Oryzabase)
Oryzabase
http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/wildCore/about
Category : Wild / Landrace