Worldwide Science Information Desk

Sorted by Institution Category

11 Wild genomes (OMAP)

http://www.omap.org/

Category : Diversity

APGC

http://genome.sinica.edu.tw/

Category : Genome Sequences

Atlas

Virtual Crops

http://www-plb.ucdavis.edu/labs/rost/Rice/ricehome.html

Category : Anatomy/Development

B.distachyon genome(DOE)

http://www.brachypodium.org/

Category : Genome Sequences

BAC clones (AGCoL)

http://www.genome.arizona.edu/orders/

Category : DNA clones

BGI-RISe

http://rise.genomics.org.cn/rice/index2.jsp

Category : Genome Sequences

BIL/DHL (RGRC)

http://www.rgrc.dna.affrc.go.jp/jp/stock.html

Category : Mutants /RIL/BIL/DHL

Cereal Knowledge Bank

http://www.knowledgebank.irri.org/

Category : Education/Labs

DFCI Gene Index

http://compbio.dfci.harvard.edu/tgi/

Category : Genes/Proteins

Experimental lines (Oryzabase)

http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/all/list

Category : Mutants /RIL/BIL/DHL

Full length cDNA (KOME)

http://www.dna.affrc.go.jp/misc/dna/idx_shinseiJ.html

Category : DNA clones

GenBank

http://www.ncbi.nlm.nih.gov/mapview/map_search.cgi?taxid=4530

Category : Maps

Gene subumission

http://www.shigen.nig.ac.jp/rice/oryzabase_submission/gene_nomenclature/

Category : Genes/Proteins

Germplasm (IRRI)

http://www.iris.irri.org/

Category : Mutants /RIL/BIL/DHL

Germplasm (IRRI)

http://www.irri.org/GRC/GRChome/Home.htm

Category : Wild / Landrace

Germplasm (USDA)

GSOR

http://www.ars.usda.gov/Main/docs.htm?docid=8318

Category : Wild / Landrace

Gibberellins

http://www.plant-hormones.info/gibberellins.htm

Category : Metabolites

Gramene

http://www.gramene.org/

Category : Genes/Proteins

Gramene

http://www.gramene.org/qtl/

Category : Genes/Proteins

Gramene

http://www.gramene.org/Oryza_sativa/index.html

Category : Maps

Gramene

http://www.gramene.org/db/cmap/viewer?changeMenu=1

Category : Maps

GreenPhyl

http://www.greenphyl.org/cgi-bin/index.cgi

Category : Functional Genomics

IRGSP

http://rgp.dna.affrc.go.jp/IRGSP/

Category : Genome Sequences

Insertional Mutants

Insertional Mutants(TRIM)

Taiwan Rice Insertional Mutants Database

http://trim.sinica.edu.tw/

Category : Functional Genomics

Keio University

OryzaPG

rice proteome database

http://oryzapg.iab.keio.ac.jp/

Category : Genes/Proteins

Kinome: RKD

RKD

http://rkd.ucdavis.edu/

Category : Others

Landrace (Kyushu Univ.)

http://www.shigen.nig.ac.jp/rice/rice-kyushu/htdocs/main.html

Category : Wild / Landrace

Linkage Maps (Oryzabase)

http://shigen.lab.nig.ac.jp/rice/oryzabase/maps/map.jsp

Category : Maps

MSU

Rice Gene Families

Community Annotation site

http://rice.plantbiology.msu.edu/annotation_community_families.shtml

Category : Genes/Proteins

MSU

http://rice.plantbiology.msu.edu/

Category : Genome Sequences

MSU

http://rice.plantbiology.msu.edu/

Category : Maps

Organellome: PODB

PODB

http://podb.nibb.ac.jp/Organellome/

Category : Others

OryGenesDB

http://orygenesdb.cirad.fr/

Category : Functional Genomics

OryzaTagLine

http://urgi.versailles.inra.fr/OryzaTagLine/

Category : Functional Genomics

Oryza_Express

Gene Expression Database for Rice

http://riceball.lab.nig.ac.jp/oryzaexpress/annot.php

Category : Genes/Proteins

Oryzabase

http://www.shigen.nig.ac.jp/rice/oryzabaseV4/gene/search

Category : Genes/Proteins

Oryzabase

http://www.shigen.nig.ac.jp/rice/oryzabaseV4/devstageineachorgan/search

Category : Anatomy/Development

Oryzabase

http://www.shigen.nig.ac.jp/rice/oryzabaseV4/education/morphology

Category : Education/Labs

Oryzabase

http://shigen.lab.nig.ac.jp/rice/oryzabase/genome//genomeTop.jsp

Category : Maps

Oryzabase

http://shigen.lab.nig.ac.jp/rice/oryzabase/comparative/comparative.jsp

Category : Maps

Pathway: RiceCyc

RiceCyc

Web-based tool for viewing biochemical pathways in rice

http://www.gramene.org/pathway/

Category : Others

Plant Ontology

http://www.plantontology.org/

Category : Anatomy/Development

Plant Ontology -Japanese

Plant Ontology - Japanese version

http://www.shigen.nig.ac.jp/plantontology/ja/go.cgi

Category : Anatomy/Development

Promoter: ppdb

ppdb

http://ppdb.agr.gifu-u.ac.jp

Category : Others

Proteome: RPD

RPD

http://cdna01.dna.affrc.go.jp/RPD/main_en.html

Category : Others

Q-TARO

http://qtaro.abr.affrc.go.jp/

Category : Genes/Proteins

RAP

http://rapdb.dna.affrc.go.jp/

Category : Genome Sequences

RAP

PGF-DB

Plant Gene Family Database

http://green.dna.affrc.go.jp/PGF-DB/

Category : Genes/Proteins

RAP

http://rapdb.dna.affrc.go.jp

Category : Maps

RAP-DB

http://rapdb.dna.affrc.go.jp/viewer/gbrowse_syn/rap/?search_src=build5;name=chr01%3A1..50000

Category : Maps

RFLP/YAC

http://www.dna.affrc.go.jp/misc/dna/idx_shinseiJ.html

Category : DNA clones

RiceFox

Rice full-length cDNA over-expressed Arabidopsis mutant database

http://ricefox.psc.riken.jp/index.php?contetns=top

Category : Functional Genomics

RiceXPro

Rice Expression Profile Database

http://ricexpro.dna.affrc.go.jp/index.html

Category : Genes/Proteins

SNPs (PGC)

http://www.pgcdna.co.jp/

Category : Diversity

Tos Lines (RGRC)

http://www.rgrc.dna.affrc.go.jp/stock.html

Category : Mutants /RIL/BIL/DHL

Transposon

RetrOryza

Rice LTR Retrotransposon database

http://www.retroryza.fr/

Category : Functional Genomics

Wild Rice (Oryzabase)

Oryzabase

http://www.shigen.nig.ac.jp/rice/oryzabaseV4/strain/wildCore/about

Category : Wild / Landrace

Wild and Landrace (NIAS)

NIAS Genebank-Plant

http://www.gene.affrc.go.jp/plant/

Category : Wild / Landrace

Xanthobase

Xanthomonas oryzae pv. oryzae genome database

http://microbe.dna.affrc.go.jp/Xanthomonas/

Category : Pathogenic bacterium

cDNA (KOME)

http://cdna01.dna.affrc.go.jp/cDNA/

Category : Genes/Proteins

cDNA/RFLP/PAC/BAC

NIAS DNA Bank

http://www.dna.affrc.go.jp/distribution/distdna.html

Category : DNA clones