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Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
9885R-1 |
| Symbol |
dpp |
Full Name |
decapentaplegic |
| CG No |
CG9885 |
Old CG No |
CG9885 |
| Synonyms |
dpp, Dpp, BMP, DPP, TGF-beta, TGFbeta, Dm-DPP, TGF-b, CG9885, l(2)k17036, unnamed, l(2)10638, l(2)22Fa, shv, M(2)LS1, ho, blk, Tg, M(2)23AB, Hin-d, DPP-C |
| Accession No (Link to NCBI) |
NM_057963.4 |
| Inserted Chr. |
ll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
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Reference
[Please submit your publication]
|
Graca FA, Rai M, Hunt LC, Stephan A, Wang YD, Gordon B, Wang R, Quarato G, Xu B, Fan Y, Labelle M, Demontis F.
The myokine Fibcd1 is an endogenous determinant of myofiber size and mitigates cancer-induced myofiber atrophy.
Nat Commun (2022) 13(1) 2370
[
PubMed ID = 35501350
]
[
RRC reference
]
Cho Y, Lai CM, Lin KY, Hsu HJ.
A Targeted RNAi Screen Reveals Drosophila Female-Sterile Genes That Control the Size of Germline Stem Cell Niche During Development.
G3 (Bethesda) (2018) 8(7) 2345-2354
[
PubMed ID = 29764959
]
[
RRC reference
]
Fairchild MJ, Islam F, Tanentzapf G.
Identification of genetic networks that act in the somatic cells of the testis to mediate the developmental program of spermatogenesis.
PLoS Genet (2017) 13(9) e1007026
[
PubMed ID = 28957323
]
[
RRC reference
]
Sato T, Ogata J, Niki Y.
BMP and Hh signaling affects primordial germ cell division in Drosophila.
Zoolog Sci (2010) 27(10) 804-10
[
PubMed ID = 20887178
]
[
RRC reference
]
Inaki M, Kojima T, Ueda R, Saigo K.
Requirements of high levels of Hedgehog signaling activity for medial-region cell fate determination in Drosophila legs: identification of pxb, a putative Hedgehog signaling attenuator gene repressed along the anterior-posterior compartment boundary.
Mech Dev (2002) 116(1-2) 3-18
[
PubMed ID = 12128201
]
[
RRC reference
]
|
| Comment |
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgTTTAATCCATTCAGCGAGCCC |
| Primer Seq. 3' |
aatctagaggtaccTTCATGTTGAACAGCGAGAGC |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 TTTAATCCAT TCAGCGAGCC CGCCTCGTTC AGTGATAGTG ATAAAAGCCA TCGGAGTAAA
0061 ACAAACAAAA AACCTAGCAA AAGTGACGCG AACCGACAAG TTCAACGAAG TGCATAAGCC
0121 AAGAACAGAC CAATTAGAAA ATTCCAAAAA TAAGTCTAAA CAATTAGTTA ATAAACCCAA
0181 CCACAACAAA ATGGCTGTCA AGGAGCAGAG GAGCCACCAC AAGAAGAGCC ACCACCATCG
0241 CAGCCACCAG CCAAAGCAGG CCAGTGCATC CACAGAATCT CATCAATCCT CGTCGATTGA
0301 ATCAATCTTC GTGGAGGAGC CGACGCTGGT GCTCGACCGC GAGGTGGCCT CCATCAACGT
0361 GCCCGCCAAC GCCCAAGGCC ATCATCGCCG AGCAGGGCCC GTCCACCTAC AGCAAGGGAG
0421 GCGCTCATCA AGGACAAGCT GAAGCCAGAC CCCTCCACTT CTAGTCGAGA TCGAGNAAGA
0481 GCCTGNTCTC GCTGTTCAAC ATGAA |
| in silico PCR Fragment |
0001 TTTAATCCAT TCAGCGAGCC CGCCTCGTTC AGTGATAGTG ATAAAAGCCA TCGGAGTAAA
0061 ACAAACAAAA AACCTAGCAA AAGTGACGCG AACCGAC-AG TTCAACGAAG TGCATAAGCC
0121 AAGAACAGAC CAATTAGAAA ATTCCAAAAA TAAGTCTAAA CAATTAGTTA ATAAACCCAA
0181 CCACAACAAA ATGGCTGTCA AGGAGCAGAG GAGCCACCAC AAGAAGAGCC ACCACCATCG
0241 CAGCCACCAG CCAAAGCAGG CCAGTGCATC CACAGAATCT CATCAATCCT CGTCGATTGA
0301 ATCAATCTTC GTGGAGGAGC CGACGCTGGT GCTCGACCGC GAGGTGGCCT CCATCAACGT
0361 GCCCGCCAAC G-CCAAGGCC ATCATCGCCG AGCAGGGCCC GTCCACCTAC AGCAA-GGAG
0421 GCGCTCATCA AGGACAAGCT GAAGCCAGAC CCCTCCAC-T CTAGTCGAGA TCGAG-AAGA
0481 GCCTGCTCTC GCTGTTCAAC ATGAA |
| Assemble Data |
9885R-1.IR_full 1 TTTAATCCATTCAGCGAGCCCGCCTCGTTCAGTGATAGTGATAAAAGCCATCGGAGTAAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9885R-1.in silico 1 TTTAATCCATTCAGCGAGCCCGCCTCGTTCAGTGATAGTGATAAAAGCCATCGGAGTAAA 60
9885R-1.IR_full 61 ACAAACAAAAAACCTAGCAAAAGTGACGCGAACCGACAAGTTCAACGAAGTGCATAAGCC 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
9885R-1.in silico 61 ACAAACAAAAAACCTAGCAAAAGTGACGCGAACCGAC-AGTTCAACGAAGTGCATAAGCC 120
9885R-1.IR_full 121 AAGAACAGACCAATTAGAAAATTCCAAAAATAAGTCTAAACAATTAGTTAATAAACCCAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9885R-1.in silico 121 AAGAACAGACCAATTAGAAAATTCCAAAAATAAGTCTAAACAATTAGTTAATAAACCCAA 180
9885R-1.IR_full 181 CCACAACAAAATGGCTGTCAAGGAGCAGAGGAGCCACCACAAGAAGAGCCACCACCATCG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9885R-1.in silico 181 CCACAACAAAATGGCTGTCAAGGAGCAGAGGAGCCACCACAAGAAGAGCCACCACCATCG 240
9885R-1.IR_full 241 CAGCCACCAGCCAAAGCAGGCCAGTGCATCCACAGAATCTCATCAATCCTCGTCGATTGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9885R-1.in silico 241 CAGCCACCAGCCAAAGCAGGCCAGTGCATCCACAGAATCTCATCAATCCTCGTCGATTGA 300
9885R-1.IR_full 301 ATCAATCTTCGTGGAGGAGCCGACGCTGGTGCTCGACCGCGAGGTGGCCTCCATCAACGT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9885R-1.in silico 301 ATCAATCTTCGTGGAGGAGCCGACGCTGGTGCTCGACCGCGAGGTGGCCTCCATCAACGT 360
9885R-1.IR_full 361 GCCCGCCAACGCCCAAGGCCATCATCGCCGAGCAGGGCCCGTCCACCTACAGCAAGGGAG 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
9885R-1.in silico 361 GCCCGCCAACG-CCAAGGCCATCATCGCCGAGCAGGGCCCGTCCACCTACAGCAA-GGAG 420
9885R-1.IR_full 421 GCGCTCATCAAGGACAAGCTGAAGCCAGACCCCTCCACTTCTAGTCGAGATCGAGNAAGA 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
9885R-1.in silico 421 GCGCTCATCAAGGACAAGCTGAAGCCAGACCCCTCCAC-TCTAGTCGAGATCGAG-AAGA 480
9885R-1.IR_full 481 GCCTGNTCTCGCTGTTCAACATGAA 505
||||| |||||||||||||||||||
9885R-1.in silico 481 GCCTGCTCTCGCTGTTCAACATGAA 505
|
| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
3 |
NM_057963.4 |
CG9885-RA, transcript variant A (dpp), mRNA |
| 100 |
482 |
0 |
0 |
3 |
NM_164485.1 |
CG9885-RB, transcript variant B (dpp), mRNA |
| 100 |
482 |
0 |
0 |
3 |
NM_164486.1 |
CG9885-RC, transcript variant C (dpp), mRNA |
| 100 |
482 |
0 |
0 |
3 |
NM_164487.1 |
CG9885-RD, transcript variant D (dpp), mRNA |
| 100 |
482 |
0 |
0 |
3 |
NM_164488.1 |
CG9885-RE, transcript variant E (dpp), mRNA |
| 0.62 |
3 |
2 |
4 |
2 |
NM_165257.1 |
CG31790-RA (CG31790), mRNA |
| 0.2 |
1 |
6 |
3 |
7 |
NM_166341.1 |
CG30127-RA (CG30127), mRNA |
| 0 |
0 |
4 |
3 |
2 |
NM_137884.2 |
CG13532-RA (CG13532), mRNA |
| 0 |
0 |
2 |
5 |
4 |
NM_134729.2 |
CG4749-RA (CG4749), mRNA |
| 0 |
0 |
2 |
5 |
3 |
NM_141004.1 |
CG3680-RA (CG3680), mRNA |
| 0 |
0 |
2 |
5 |
2 |
NM_169500.1 |
CG8630-RA (CG8630), mRNA |
| 0 |
0 |
2 |
4 |
6 |
NM_168473.2 |
CG32088-RA (CG32088), mRNA |
| 0 |
0 |
2 |
3 |
5 |
NM_139541.1 |
CG12017-RA (CG12017), mRNA |
| 0 |
0 |
2 |
2 |
5 |
NM_169874.1 |
CG4608-RA (bnl), mRNA |
| 0 |
0 |
2 |
2 |
3 |
NM_142641.1 |
CG5434-RA (Srp72), mRNA |
| 0 |
0 |
2 |
2 |
2 |
NM_001032062.1 |
CG9515-RA, transcript variant A (CG9515), mRNA |
| 0 |
0 |
2 |
2 |
2 |
NM_001032063.1 |
CG9510-RB, transcript variant B (CG9510), mRNA |
| 0 |
0 |
2 |
2 |
2 |
NM_135413.2 |
CG9510-RA, transcript variant A (CG9510), mRNA |
| 0 |
0 |
1 |
6 |
10 |
NM_167487.1 |
CG32577-RA (disco-r), mRNA |
| 0 |
0 |
1 |
5 |
5 |
NM_166724.1 |
CG32005-RA (CG32005), mRNA |
| 0 |
0 |
1 |
4 |
6 |
NM_140931.1 |
CG7290-RA (CG7290), mRNA |
| 0 |
0 |
1 |
4 |
4 |
NM_142919.1 |
CG10365-RA, transcript variant A (CG10365), mRNA |
| 0 |
0 |
1 |
3 |
6 |
NM_143367.2 |
CG10011-RA (CG10011), mRNA |
| 0 |
0 |
1 |
3 |
6 |
NM_205952.1 |
CG4128-RD, transcript variant D (nAcRalpha-30D), mRNA |
| 0 |
0 |
1 |
3 |
6 |
NM_205953.1 |
CG4128-RE, transcript variant E (nAcRalpha-30D), mRNA |
| 0 |
0 |
1 |
3 |
6 |
NM_164874.2 |
CG4128-RA, transcript variant A (nAcRalpha-30D), mRNA |
| 0 |
0 |
1 |
3 |
6 |
NM_205951.1 |
CG4128-RB, transcript variant B (nAcRalpha-30D), mRNA |
| 0 |
0 |
1 |
3 |
6 |
NM_135472.4 |
CG4128-RC, transcript variant C (nAcRalpha-30D), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_170556.1 |
CG11525-RC, transcript variant C (CycG), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_137034.2 |
CG17064-RA (mars), mRNA |
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