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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 9739R-1 
 Symbol fz2  Full Name frizzled 2 
 CG No CG9739  Old CG No CG9739 
 Synonyms Dfz2, D-fz2, DFz2, Dfrz2, DFz-2, dfz(2), fz-2, dFz2, dfz2r, DFZ2, D-Fz2, CG9739, fz2, frizzled 2, frizzled2, D-frizzled2, Dfrizzled2, dfz2, Fz2, Dfz[[2]] 
 Accession No (Link to NCBI) NM_079431.2 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Cho Y, Lai CM, Lin KY, Hsu HJ.
A Targeted RNAi Screen Reveals Drosophila Female-Sterile Genes That Control the Size of Germline Stem Cell Niche During Development.
G3 (Bethesda) (2018) 8(7) 2345-2354 [ PubMed ID = 29764959 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGGTCCTGATCCTGGGACTCGT 
 Primer Seq. 3'
aatctagaggtaccCGGGGTCACCATGAAGAGGCA 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 GGTCCTGATC CTGGGACTCG TCCTCCTGCT GACATCTTGT CGAGCGGATG GACCGCTGCA 
0061 CAGTGCGGAT CACGGCATGG GCGGAATGGG CATGGGTGGT CACGGCCTGG ACGCGAGTCC 
0121 CGCACCCGGT TACGGAGTGC CAGCCATACC CAAGGATCCC AATCTGCGAT GCGAGGAGAT 
0181 CACCATACCA ATGTGTCGGG GCATTGGCNT ACAACATGAC ATCCTTCCCC AACGAAATGA 
0241 ACCACGAGAC CCAGGACGAA GCGGGCCTGG AGGTGCACCA GTTCTGGCCC CTGGTGGAGA 
0301 TCAAATGCTC GCCGGACCTC AAGTTCTTCC TGTGCAGCAT GTACACGCCC ATCTGCCTGG 
0361 AGGATTACCA CAAGCCGCTG CCCGTTTGCC GGAGTGTCTG CGAGAGAGCC CGCTCGGGAT 
0421 GCGCACCCAT CATGCAGCAG TACAGCTTCG AATGGCCGGA GAGAATGGCG TGCGAGCACT 
0481 TGCCTCTTCA TGGTGACCCC G 
 in silico PCR Fragment
0001 GGTCCTGATC CTGGGACTCG TCCTCCTGCT GACATCTTGT CGAGCGGATG GACCGCTGCA 
0061 CAGTGCGGAT CACGGCATGG GCGGAATGGG CATGGGTGGT CACGGCCTGG ACGCGAGTCC 
0121 CGCACCCGGT TACGGAGTGC CAGTCATACC CAAGGATCCC AATCTGCGAT GCGAGGAGAT 
0181 CACCATACCA ATGTGTCGGG GCATTGGC-T ACAACATGAC ATCCTTCCCC AACGAAATGA 
0241 ACCATGAGAC CCAGGACGAA GCGGGCCTGG AGGTGCACCA GTTCTGGCCC CTGGTGGAGA 
0301 TCAAATGCTC GCCGGACCTC AAGTTCTTCC TGTGCAGCAT GTACACGCCC ATCTGCCTGG 
0361 AGGATTACCA CAAGCCGCTG CCCGTTTGCC GGAGTGTCTG CGAGAGAGCC CGCTCGGGAT 
0421 GCGCACCCAT CATGCAGCAG TACAGCTTCG AATGGCCGGA GAGAATGGCG TGCGAGCACT 
0481 TGCCTCTTCA TGGTGACCCC G 
 Assemble Data

9739R-1.IR_full       1   GGTCCTGATCCTGGGACTCGTCCTCCTGCTGACATCTTGTCGAGCGGATGGACCGCTGCA 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9739R-1.in silico     1   GGTCCTGATCCTGGGACTCGTCCTCCTGCTGACATCTTGTCGAGCGGATGGACCGCTGCA 60


9739R-1.IR_full       61  CAGTGCGGATCACGGCATGGGCGGAATGGGCATGGGTGGTCACGGCCTGGACGCGAGTCC 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9739R-1.in silico     61  CAGTGCGGATCACGGCATGGGCGGAATGGGCATGGGTGGTCACGGCCTGGACGCGAGTCC 120


9739R-1.IR_full       121 CGCACCCGGTTACGGAGTGCCAGCCATACCCAAGGATCCCAATCTGCGATGCGAGGAGAT 180
                          ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
9739R-1.in silico     121 CGCACCCGGTTACGGAGTGCCAGTCATACCCAAGGATCCCAATCTGCGATGCGAGGAGAT 180


9739R-1.IR_full       181 CACCATACCAATGTGTCGGGGCATTGGCNTACAACATGACATCCTTCCCCAACGAAATGA 240
                          |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
9739R-1.in silico     181 CACCATACCAATGTGTCGGGGCATTGGC-TACAACATGACATCCTTCCCCAACGAAATGA 240


9739R-1.IR_full       241 ACCACGAGACCCAGGACGAAGCGGGCCTGGAGGTGCACCAGTTCTGGCCCCTGGTGGAGA 300
                          |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
9739R-1.in silico     241 ACCATGAGACCCAGGACGAAGCGGGCCTGGAGGTGCACCAGTTCTGGCCCCTGGTGGAGA 300


9739R-1.IR_full       301 TCAAATGCTCGCCGGACCTCAAGTTCTTCCTGTGCAGCATGTACACGCCCATCTGCCTGG 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9739R-1.in silico     301 TCAAATGCTCGCCGGACCTCAAGTTCTTCCTGTGCAGCATGTACACGCCCATCTGCCTGG 360


9739R-1.IR_full       361 AGGATTACCACAAGCCGCTGCCCGTTTGCCGGAGTGTCTGCGAGAGAGCCCGCTCGGGAT 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9739R-1.in silico     361 AGGATTACCACAAGCCGCTGCCCGTTTGCCGGAGTGTCTGCGAGAGAGCCCGCTCGGGAT 420


9739R-1.IR_full       421 GCGCACCCATCATGCAGCAGTACAGCTTCGAATGGCCGGAGAGAATGGCGTGCGAGCACT 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9739R-1.in silico     421 GCGCACCCATCATGCAGCAGTACAGCTTCGAATGGCCGGAGAGAATGGCGTGCGAGCACT 480


9739R-1.IR_full       481 TGCCTCTTCATGGTGACCCCG 501
                          |||||||||||||||||||||
9739R-1.in silico     481 TGCCTCTTCATGGTGACCCCG 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_168787.1  CG9739-RB, transcript variant B (fz2), mRNA 
100   482  NM_079431.2  CG9739-RA, transcript variant A (fz2), mRNA 
0.62   NM_164654.1  CG7235-RA, transcript variant A (Hsp60C), mRNA 
0.62   NM_135104.4  CG7235-RC, transcript variant C (Hsp60C), mRNA 
0.62   NM_164655.2  CG7235-RB, transcript variant B (Hsp60C), mRNA 
0   NM_142709.2  CG10823-RA, transcript variant A (SIFR), mRNA 
0   NM_169955.2  CG10823-RB, transcript variant B (SIFR), mRNA 
0   NM_167256.1  CG32669-RA (CG32669), mRNA 
0   NM_176360.1  CG32206-RC, transcript variant C (CG32206), mRNA 
0   NM_168794.2  CG32206-RB, transcript variant B (CG32206), mRNA 
0   NM_167329.2  CG17762-RC, transcript variant C (tomosyn), mRNA 
0   NM_131990.1  CG12732-RA (CG12732), mRNA 
0   NM_078664.2  CG5870-RA (beta-Spec), mRNA 
0   NM_131934.1  CG3626-RA (CG3626), mRNA 
0   NM_131931.1  CG12692-RB (CG12692), mRNA 
0   NM_139802.2  CG32392-RB, transcript variant B (CG32392), mRNA 
0   NM_137482.1  CG17525-RA (GstE4), mRNA 
0   NM_168090.1  CG32242-RA (CG32242), mRNA 
0   NM_142139.1  CG3610-RA (CG3610), mRNA 
0   NM_166681.1  CG3683-RC, transcript variant C (CG3683), mRNA 
0   NM_166680.1  CG3683-RB, transcript variant B (CG3683), mRNA 
0   NM_138110.2  CG3683-RA, transcript variant A (CG3683), mRNA 
0   NM_168633.1  CG6151-RB, transcript variant B (CG6151), mRNA 
0   NM_168632.1  CG6151-RC, transcript variant C (CG6151), mRNA 
0   NM_140547.2  CG6151-RA, transcript variant A (CG6151), mRNA 
0   NM_142100.2  CG8524-RA, transcript variant A (NK7.1), mRNA 
0   NM_169580.1  CG8524-RB, transcript variant B (NK7.1), mRNA 
0   NM_080325.3  CG6450-RC (lva), mRNA 
0   NM_165178.1  CG17332-RD, transcript variant D (VhaSFD), mRNA 
0   NM_078861.2  CG17332-RA, transcript variant A (VhaSFD), mRNA 

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