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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
9739R-1 |
Symbol |
fz2 |
Full Name |
frizzled 2 |
CG No |
CG9739 |
Old CG No |
CG9739 |
Synonyms |
Dfz2, D-fz2, DFz2, Dfrz2, DFz-2, dfz(2), fz-2, dFz2, dfz2r, DFZ2, D-Fz2, CG9739, fz2, frizzled 2, frizzled2, D-frizzled2, Dfrizzled2, dfz2, Fz2, Dfz[[2]] |
Accession No (Link to NCBI) |
NM_079431.2 |
Inserted Chr. |
ll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Cho Y, Lai CM, Lin KY, Hsu HJ. A Targeted RNAi Screen Reveals Drosophila Female-Sterile Genes That Control the Size of Germline Stem Cell Niche During Development. G3 (Bethesda) (2018) 8(7) 2345-2354
[
PubMed ID = 29764959
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgGGTCCTGATCCTGGGACTCGT |
Primer Seq. 3' |
aatctagaggtaccCGGGGTCACCATGAAGAGGCA |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 GGTCCTGATC CTGGGACTCG TCCTCCTGCT GACATCTTGT CGAGCGGATG GACCGCTGCA
0061 CAGTGCGGAT CACGGCATGG GCGGAATGGG CATGGGTGGT CACGGCCTGG ACGCGAGTCC
0121 CGCACCCGGT TACGGAGTGC CAGCCATACC CAAGGATCCC AATCTGCGAT GCGAGGAGAT
0181 CACCATACCA ATGTGTCGGG GCATTGGCNT ACAACATGAC ATCCTTCCCC AACGAAATGA
0241 ACCACGAGAC CCAGGACGAA GCGGGCCTGG AGGTGCACCA GTTCTGGCCC CTGGTGGAGA
0301 TCAAATGCTC GCCGGACCTC AAGTTCTTCC TGTGCAGCAT GTACACGCCC ATCTGCCTGG
0361 AGGATTACCA CAAGCCGCTG CCCGTTTGCC GGAGTGTCTG CGAGAGAGCC CGCTCGGGAT
0421 GCGCACCCAT CATGCAGCAG TACAGCTTCG AATGGCCGGA GAGAATGGCG TGCGAGCACT
0481 TGCCTCTTCA TGGTGACCCC G |
in silico PCR Fragment |
0001 GGTCCTGATC CTGGGACTCG TCCTCCTGCT GACATCTTGT CGAGCGGATG GACCGCTGCA
0061 CAGTGCGGAT CACGGCATGG GCGGAATGGG CATGGGTGGT CACGGCCTGG ACGCGAGTCC
0121 CGCACCCGGT TACGGAGTGC CAGTCATACC CAAGGATCCC AATCTGCGAT GCGAGGAGAT
0181 CACCATACCA ATGTGTCGGG GCATTGGC-T ACAACATGAC ATCCTTCCCC AACGAAATGA
0241 ACCATGAGAC CCAGGACGAA GCGGGCCTGG AGGTGCACCA GTTCTGGCCC CTGGTGGAGA
0301 TCAAATGCTC GCCGGACCTC AAGTTCTTCC TGTGCAGCAT GTACACGCCC ATCTGCCTGG
0361 AGGATTACCA CAAGCCGCTG CCCGTTTGCC GGAGTGTCTG CGAGAGAGCC CGCTCGGGAT
0421 GCGCACCCAT CATGCAGCAG TACAGCTTCG AATGGCCGGA GAGAATGGCG TGCGAGCACT
0481 TGCCTCTTCA TGGTGACCCC G |
Assemble Data |
9739R-1.IR_full 1 GGTCCTGATCCTGGGACTCGTCCTCCTGCTGACATCTTGTCGAGCGGATGGACCGCTGCA 60
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9739R-1.in silico 1 GGTCCTGATCCTGGGACTCGTCCTCCTGCTGACATCTTGTCGAGCGGATGGACCGCTGCA 60
9739R-1.IR_full 61 CAGTGCGGATCACGGCATGGGCGGAATGGGCATGGGTGGTCACGGCCTGGACGCGAGTCC 120
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9739R-1.in silico 61 CAGTGCGGATCACGGCATGGGCGGAATGGGCATGGGTGGTCACGGCCTGGACGCGAGTCC 120
9739R-1.IR_full 121 CGCACCCGGTTACGGAGTGCCAGCCATACCCAAGGATCCCAATCTGCGATGCGAGGAGAT 180
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9739R-1.in silico 121 CGCACCCGGTTACGGAGTGCCAGTCATACCCAAGGATCCCAATCTGCGATGCGAGGAGAT 180
9739R-1.IR_full 181 CACCATACCAATGTGTCGGGGCATTGGCNTACAACATGACATCCTTCCCCAACGAAATGA 240
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9739R-1.in silico 181 CACCATACCAATGTGTCGGGGCATTGGC-TACAACATGACATCCTTCCCCAACGAAATGA 240
9739R-1.IR_full 241 ACCACGAGACCCAGGACGAAGCGGGCCTGGAGGTGCACCAGTTCTGGCCCCTGGTGGAGA 300
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9739R-1.in silico 241 ACCATGAGACCCAGGACGAAGCGGGCCTGGAGGTGCACCAGTTCTGGCCCCTGGTGGAGA 300
9739R-1.IR_full 301 TCAAATGCTCGCCGGACCTCAAGTTCTTCCTGTGCAGCATGTACACGCCCATCTGCCTGG 360
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9739R-1.in silico 301 TCAAATGCTCGCCGGACCTCAAGTTCTTCCTGTGCAGCATGTACACGCCCATCTGCCTGG 360
9739R-1.IR_full 361 AGGATTACCACAAGCCGCTGCCCGTTTGCCGGAGTGTCTGCGAGAGAGCCCGCTCGGGAT 420
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9739R-1.in silico 361 AGGATTACCACAAGCCGCTGCCCGTTTGCCGGAGTGTCTGCGAGAGAGCCCGCTCGGGAT 420
9739R-1.IR_full 421 GCGCACCCATCATGCAGCAGTACAGCTTCGAATGGCCGGAGAGAATGGCGTGCGAGCACT 480
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9739R-1.in silico 421 GCGCACCCATCATGCAGCAGTACAGCTTCGAATGGCCGGAGAGAATGGCGTGCGAGCACT 480
9739R-1.IR_full 481 TGCCTCTTCATGGTGACCCCG 501
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9739R-1.in silico 481 TGCCTCTTCATGGTGACCCCG 501
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
0 |
NM_168787.1 |
CG9739-RB, transcript variant B (fz2), mRNA |
100 |
482 |
0 |
0 |
0 |
NM_079431.2 |
CG9739-RA, transcript variant A (fz2), mRNA |
0.62 |
3 |
2 |
5 |
6 |
NM_164654.1 |
CG7235-RA, transcript variant A (Hsp60C), mRNA |
0.62 |
3 |
2 |
5 |
6 |
NM_135104.4 |
CG7235-RC, transcript variant C (Hsp60C), mRNA |
0.62 |
3 |
2 |
5 |
6 |
NM_164655.2 |
CG7235-RB, transcript variant B (Hsp60C), mRNA |
0 |
0 |
4 |
4 |
4 |
NM_142709.2 |
CG10823-RA, transcript variant A (SIFR), mRNA |
0 |
0 |
4 |
4 |
4 |
NM_169955.2 |
CG10823-RB, transcript variant B (SIFR), mRNA |
0 |
0 |
3 |
2 |
9 |
NM_167256.1 |
CG32669-RA (CG32669), mRNA |
0 |
0 |
2 |
9 |
5 |
NM_176360.1 |
CG32206-RC, transcript variant C (CG32206), mRNA |
0 |
0 |
2 |
9 |
5 |
NM_168794.2 |
CG32206-RB, transcript variant B (CG32206), mRNA |
0 |
0 |
2 |
3 |
3 |
NM_167329.2 |
CG17762-RC, transcript variant C (tomosyn), mRNA |
0 |
0 |
1 |
4 |
6 |
NM_131990.1 |
CG12732-RA (CG12732), mRNA |
0 |
0 |
1 |
3 |
8 |
NM_078664.2 |
CG5870-RA (beta-Spec), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_131934.1 |
CG3626-RA (CG3626), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_131931.1 |
CG12692-RB (CG12692), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_139802.2 |
CG32392-RB, transcript variant B (CG32392), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_137482.1 |
CG17525-RA (GstE4), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_168090.1 |
CG32242-RA (CG32242), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_142139.1 |
CG3610-RA (CG3610), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_166681.1 |
CG3683-RC, transcript variant C (CG3683), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_166680.1 |
CG3683-RB, transcript variant B (CG3683), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_138110.2 |
CG3683-RA, transcript variant A (CG3683), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_168633.1 |
CG6151-RB, transcript variant B (CG6151), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_168632.1 |
CG6151-RC, transcript variant C (CG6151), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_140547.2 |
CG6151-RA, transcript variant A (CG6151), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_142100.2 |
CG8524-RA, transcript variant A (NK7.1), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_169580.1 |
CG8524-RB, transcript variant B (NK7.1), mRNA |
0 |
0 |
0 |
6 |
8 |
NM_080325.3 |
CG6450-RC (lva), mRNA |
0 |
0 |
0 |
6 |
4 |
NM_165178.1 |
CG17332-RD, transcript variant D (VhaSFD), mRNA |
0 |
0 |
0 |
6 |
4 |
NM_078861.2 |
CG17332-RA, transcript variant A (VhaSFD), mRNA |
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