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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
9650R-1 |
Symbol |
CG9650 |
Full Name |
CG9650 |
CG No |
CG9650 |
Old CG No |
CG9650 |
Synonyms |
CG9650 |
Accession No (Link to NCBI) |
NM_167123.2 |
Inserted Chr. |
ll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
semi-lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Dequéant ML, Fagegaltier D, Hu Y, Spirohn K, Simcox A, Hannon GJ, Perrimon N. Discovery of progenitor cell signatures by time-series synexpression analysis during Drosophila embryonic cell immortalization. Proc Natl Acad Sci U S A (2015) 112(42) 12974-9
[
PubMed ID = 26438832
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgTGCCAATGGTCAGGTGGTGGG |
Primer Seq. 3' |
aatctagaggtaccTCTCGGGAGGAGTGAGGGAAT |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 TGCCAATGGT CAGGTGGTGG GTGGCGTGGT CTCCGGTTCG GGTGAGCCAC GTCCTCCATC
0061 GTCGAGCAGC AGTGGCAGCC AGAGGGGATC GGTGcCCCCG GCTGCCCTGC CACCACCATC
0121 TCTGAGCTCC CAGCAGCAGC AGCAACAGCA GCAGGCGGNT GCAGCAGCAG CAACAACAAG
0181 GCGCCCAGCA GCAACTCCAG TCCGCACAGC AGCAACAGCA GTCCCAGCAG CAATCGCAAC
0241 AGCAACAGCA GATAACACCC GGTCTGGTTG GTGGAGCTGG TGGCTCCCTA AAATTGGAAC
0301 CCCAGCAGAT GGATTTTTAC TCGCAGCGAT TGCGTCAGCT TGCGGGCACA ACAAGCCCTG
0361 GAGCTGGCAG CACTGTTAAC TCGAGCTCGC CGAGTCCTCG ACAGAAGCAA TCGCCGCATT
0421 TCGCGAGCCC CTCGCCCTCG CAGCAGCAGC AACAGCAACT GGCCACAATC CCGCGACCCC
0481 ATTCCCTCAC TCCTCCCGAG A |
in silico PCR Fragment |
0001 TGCCAATGGT CAGGTGGTGG GTGGCGTGGT CTCCGGTTCG GGTGAGCCAC GTCCTCCATC
0061 GTCGAGCAGC AGTGGCAGCC AGAGGGGATC GGTGCCCCCG GCTGCCCTGC CACCACCATC
0121 TCTGAGCTCC CAGCAGCAGC AGCAACAGCA GCAGGCGG-T GCAGCAGCAG CAACAACAAG
0181 GCGCCCAGCA GCAACTCCAG TCCGCACAGC AGCAACAGCA GTCCCAGCAG CAATCGCAAC
0241 AGCAACAGCA GATAACACCC GGTCTGGTTG GTGGAGCTGG TGGCTCCCTA AAATTGGAAC
0301 CCCAGCAGAT GGATTTTTAC TCGCAGCGAT TGCGTCAGCT TGCGGGCACA ACAAGCCCTG
0361 GAGCTGGCAG CACTGTTAAC TCGAGCTCGC CGAGTCCTCG ACAGAAGCAA TCGCCGCATT
0421 TCGCGAGCCC CTCGCCCTCG CAGCAGCAGC AACAGCAACT GGCCACAATC CCGCGACCCC
0481 ATTCCCTCAC TCCTCCCGAG A |
Assemble Data |
9650R-1.IR_full 1 TGCCAATGGTCAGGTGGTGGGTGGCGTGGTCTCCGGTTCGGGTGAGCCACGTCCTCCATC 60
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9650R-1.in silico 1 TGCCAATGGTCAGGTGGTGGGTGGCGTGGTCTCCGGTTCGGGTGAGCCACGTCCTCCATC 60
9650R-1.IR_full 61 GTCGAGCAGCAGTGGCAGCCAGAGGGGATCGGTGCCCCCGGCTGCCCTGCCACCACCATC 120
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9650R-1.in silico 61 GTCGAGCAGCAGTGGCAGCCAGAGGGGATCGGTGCCCCCGGCTGCCCTGCCACCACCATC 120
9650R-1.IR_full 121 TCTGAGCTCCCAGCAGCAGCAGCAACAGCAGCAGGCGGNTGCAGCAGCAGCAACAACAAG 180
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9650R-1.in silico 121 TCTGAGCTCCCAGCAGCAGCAGCAACAGCAGCAGGCGG-TGCAGCAGCAGCAACAACAAG 180
9650R-1.IR_full 181 GCGCCCAGCAGCAACTCCAGTCCGCACAGCAGCAACAGCAGTCCCAGCAGCAATCGCAAC 240
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9650R-1.in silico 181 GCGCCCAGCAGCAACTCCAGTCCGCACAGCAGCAACAGCAGTCCCAGCAGCAATCGCAAC 240
9650R-1.IR_full 241 AGCAACAGCAGATAACACCCGGTCTGGTTGGTGGAGCTGGTGGCTCCCTAAAATTGGAAC 300
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9650R-1.in silico 241 AGCAACAGCAGATAACACCCGGTCTGGTTGGTGGAGCTGGTGGCTCCCTAAAATTGGAAC 300
9650R-1.IR_full 301 CCCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTG 360
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9650R-1.in silico 301 CCCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTG 360
9650R-1.IR_full 361 GAGCTGGCAGCACTGTTAACTCGAGCTCGCCGAGTCCTCGACAGAAGCAATCGCCGCATT 420
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9650R-1.in silico 361 GAGCTGGCAGCACTGTTAACTCGAGCTCGCCGAGTCCTCGACAGAAGCAATCGCCGCATT 420
9650R-1.IR_full 421 TCGCGAGCCCCTCGCCCTCGCAGCAGCAGCAACAGCAACTGGCCACAATCCCGCGACCCC 480
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9650R-1.in silico 421 TCGCGAGCCCCTCGCCCTCGCAGCAGCAGCAACAGCAACTGGCCACAATCCCGCGACCCC 480
9650R-1.IR_full 481 ATTCCCTCACTCCTCCCGAGA 501
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9650R-1.in silico 481 ATTCCCTCACTCCTCCCGAGA 501
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
10 |
61 |
194 |
NM_132157.1 |
CG9650-RB, transcript variant B (CG9650), mRNA |
100 |
482 |
10 |
61 |
194 |
NM_167121.1 |
CG9650-RC, transcript variant C (CG9650), mRNA |
100 |
482 |
8 |
48 |
145 |
NM_167123.2 |
CG9650-RA, transcript variant A (CG9650), mRNA |
6.63 |
32 |
422 |
1017 |
2166 |
NM_080536.2 |
CG4013-RA, transcript variant A (Smr), mRNA |
6.63 |
32 |
422 |
1017 |
2166 |
NM_167334.1 |
CG4013-RB, transcript variant B (Smr), mRNA |
6.63 |
32 |
422 |
1017 |
2166 |
NM_167335.1 |
CG4013-RC, transcript variant C (Smr), mRNA |
5.6 |
27 |
95 |
322 |
770 |
NM_079903.2 |
CG15319-RB (nej), mRNA |
5.18 |
25 |
77 |
208 |
555 |
NM_169386.1 |
CG17228-RA, transcript variant A (pros), mRNA |
4.14 |
20 |
56 |
162 |
537 |
NM_132525.1 |
CG15740-RA (CG15740), mRNA |
4.14 |
20 |
52 |
185 |
360 |
NM_132004.2 |
CG4136-RA (CG4136), mRNA |
3.94 |
19 |
144 |
465 |
1099 |
NM_080376.1 |
CG8118-RA, transcript variant A (mam), mRNA |
3.94 |
19 |
144 |
465 |
1099 |
NM_166030.1 |
CG8118-RB, transcript variant B (mam), mRNA |
3.52 |
17 |
102 |
293 |
701 |
NM_079671.2 |
CG7847-RA, transcript variant A (sr), mRNA |
3.52 |
17 |
61 |
172 |
478 |
NM_142597.2 |
CG12254-RA (MED25), mRNA |
3.52 |
17 |
57 |
158 |
420 |
NM_079593.3 |
CG17228-RC, transcript variant C (pros), mRNA |
3.52 |
17 |
57 |
158 |
420 |
NM_176459.1 |
CG17228-RD, transcript variant D (pros), mRNA |
3.31 |
16 |
71 |
344 |
763 |
NM_139493.2 |
CG2083-RA (CG2083), mRNA |
3.31 |
16 |
56 |
223 |
443 |
NM_167000.1 |
CG32778-RA (CG32778), mRNA |
3.31 |
16 |
30 |
106 |
224 |
NM_057511.3 |
CG3936-RA (N), mRNA |
3.11 |
15 |
63 |
133 |
264 |
NM_167189.2 |
CG32705-RA (CG32705), mRNA |
3.11 |
15 |
56 |
188 |
388 |
NM_132126.1 |
CG3075-RA (CG3075), mRNA |
2.9 |
14 |
94 |
299 |
795 |
NM_169781.1 |
CG31243-RE, transcript variant E (cpo), mRNA |
2.9 |
14 |
94 |
299 |
795 |
NM_169782.1 |
CG31243-RA, transcript variant A (cpo), mRNA |
2.9 |
14 |
94 |
299 |
790 |
NM_169783.1 |
CG31243-RB, transcript variant B (cpo), mRNA |
2.9 |
14 |
57 |
173 |
358 |
NM_001043134.1 |
CG7368-RB (CG7368), mRNA |
2.9 |
14 |
52 |
212 |
322 |
NM_206456.1 |
CG32466-RB, transcript variant B (rn), mRNA |
2.9 |
14 |
34 |
145 |
339 |
NM_080157.2 |
CG11648-RB, transcript variant B (Abd-B), mRNA |
2.9 |
14 |
27 |
84 |
208 |
NM_176039.1 |
CG32970-RA (CG32970), mRNA |
2.9 |
14 |
26 |
115 |
360 |
NM_176542.1 |
CG7029-RA (CG7029), mRNA |
2.69 |
13 |
69 |
322 |
733 |
NM_078797.2 |
CG13109-RA (tai), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
N |
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+ |
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DB |
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+ |
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DC |
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++ |
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DM |
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+ |
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VM |
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+ |
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VB |
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Dcompartment |
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Penetrance |
+ |
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- |
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