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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 9640R-2 
 Symbol CG9640  Full Name CG9640 
 CG No CG9640  Old CG No CG9640 
 Synonyms CG9640 
 Accession No (Link to NCBI) NM_137337.1 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTTCAGCATGCTCACGATGAGA 
 Primer Seq. 3'
aatctagaggtaccGTGAAGTGCATCCGAAGTTAG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 TTCAGCATGC TCACGATGAG AAGTTGGGCA GGCATCTGGT GGCTAGTATA GCCATCGAAC 
0061 CGGGAGATAC CATATTGGAG GAGCGACCCT TGCTGGTAGC TCCACACTGG GAATGCCATC 
0121 AGCTGAAGTG CGCGCAATGC CTTCAGGAAT CCTATGTGAT ATGCCGAAGG TGTCAGGTAT 
0181 TTCCCCTGTG CATGGACTGC AACCAGCATG ATGAATTCGA GTGTGAGTTT TTCACCAGCG 
0241 GAGCAGGNAA AAGCCCTCTG CAAGGATATT CTTGTGAAGA ACTTTGGCAT ATGTGGACTC 
0301 CTAAAGCTCC TTCTTCTGCT AGAGAATCCT CGTACAAAAG GCGATTGCCA AATGCTCATC 
0361 GATGTTCCTA TAAATCTGAG TGATTACCGC GACGGAGAAG GAATGTGGCA AGAGCACGAG 
0421 GAGCTAGTGG TGCGTCCACT AATGGAGAGT NGGCCTAGCG GATGTTCTAC CCACTCAGGA 
0481 GCTAACTTCG GATGCACTTC AC 
 in silico PCR Fragment
0001 TTCAGCATGC TCACGATGAG AAGTTGGGCA GGCATCTGGT GGCTAGTATA GCCATCGAAC 
0061 CGGGAGATAC CATATTGGAG GAGCGACCCT TGCTGGTAGC TCCACACTGG GAATGCCATC 
0121 AGCTGAAGTG CGCGCAATGC CTTCAGGAAT CCTATGTGAT ATGCCGAAGG TGTCAGGTAT 
0181 TTCCCCTGTG CATGGACTGC AACCAGCATG ATGAATTCGA GTGTGAGTTT TTCACCAGCG 
0241 GAGCAGG-AA AAGCCCTCTG CAAGGATATT CTTGTGAAGA ACTTTGGCAT ATGTGGACTC 
0301 CTAAAGCTCC TTCTTCTGCT AGAGAATCCT CGTACAAAAG GCGATTGCCA AATGCTCATC 
0361 GATGTTCCTA TAAATCTGAG TGATTACCGC GACGGAGAAG GAATGTGGCA AGAGCACGAG 
0421 GAGCTAGTGG TGCGTCCACT AATGGAGAGT -GGCCTAGCG GATGTTCTAC CCACTCAGGA 
0481 GCTAACTTCG GATGCACTTC AC 
 Assemble Data

9640R-2.IR_full       1   TTCAGCATGCTCACGATGAGAAGTTGGGCAGGCATCTGGTGGCTAGTATAGCCATCGAAC 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9640R-2.in silico     1   TTCAGCATGCTCACGATGAGAAGTTGGGCAGGCATCTGGTGGCTAGTATAGCCATCGAAC 60


9640R-2.IR_full       61  CGGGAGATACCATATTGGAGGAGCGACCCTTGCTGGTAGCTCCACACTGGGAATGCCATC 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9640R-2.in silico     61  CGGGAGATACCATATTGGAGGAGCGACCCTTGCTGGTAGCTCCACACTGGGAATGCCATC 120


9640R-2.IR_full       121 AGCTGAAGTGCGCGCAATGCCTTCAGGAATCCTATGTGATATGCCGAAGGTGTCAGGTAT 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9640R-2.in silico     121 AGCTGAAGTGCGCGCAATGCCTTCAGGAATCCTATGTGATATGCCGAAGGTGTCAGGTAT 180


9640R-2.IR_full       181 TTCCCCTGTGCATGGACTGCAACCAGCATGATGAATTCGAGTGTGAGTTTTTCACCAGCG 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9640R-2.in silico     181 TTCCCCTGTGCATGGACTGCAACCAGCATGATGAATTCGAGTGTGAGTTTTTCACCAGCG 240


9640R-2.IR_full       241 GAGCAGGNAAAAGCCCTCTGCAAGGATATTCTTGTGAAGAACTTTGGCATATGTGGACTC 300
                          ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
9640R-2.in silico     241 GAGCAGG-AAAAGCCCTCTGCAAGGATATTCTTGTGAAGAACTTTGGCATATGTGGACTC 300


9640R-2.IR_full       301 CTAAAGCTCCTTCTTCTGCTAGAGAATCCTCGTACAAAAGGCGATTGCCAAATGCTCATC 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9640R-2.in silico     301 CTAAAGCTCCTTCTTCTGCTAGAGAATCCTCGTACAAAAGGCGATTGCCAAATGCTCATC 360


9640R-2.IR_full       361 GATGTTCCTATAAATCTGAGTGATTACCGCGACGGAGAAGGAATGTGGCAAGAGCACGAG 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9640R-2.in silico     361 GATGTTCCTATAAATCTGAGTGATTACCGCGACGGAGAAGGAATGTGGCAAGAGCACGAG 420


9640R-2.IR_full       421 GAGCTAGTGGTGCGTCCACTAATGGAGAGTNGGCCTAGCGGATGTTCTACCCACTCAGGA 480
                          |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
9640R-2.in silico     421 GAGCTAGTGGTGCGTCCACTAATGGAGAGT-GGCCTAGCGGATGTTCTACCCACTCAGGA 480


9640R-2.IR_full       481 GCTAACTTCGGATGCACTTCAC 502
                          ||||||||||||||||||||||
9640R-2.in silico     481 GCTAACTTCGGATGCACTTCAC 502

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_137337.1  CG9640-RA (CG9640), mRNA 
0   NM_132247.2  CG11190-RA (CG11190), mRNA 
0   NM_142001.1  CG17319-RA (CG17319), mRNA 
0   NM_079191.2  CG14999-RA (RfC40), mRNA 
0   NM_137100.2  CG8503-RA (CG8503), mRNA 
0   NM_142168.1  CG6752-RA (CG6752), mRNA 
0   NM_166110.1  CG30091-RA (CG30091), mRNA 
0   NM_079576.1  CG12809-RA (nerfin-2), mRNA 
0   NM_141609.1  CG11994-RA (Ada), mRNA 
0   22  NM_175960.3  CG33196-RB (dp), mRNA 
0   NM_135971.1  CG13283-RA (CG13283), mRNA 
0   NM_134964.1  CG3921-RA (CG3921), mRNA 
0   NM_135406.2  CG9463-RA (CG9463), mRNA 
0   NM_139555.1  CG12010-RA, transcript variant A (CG12010), mRNA 
0   NM_168030.1  CG12010-RB, transcript variant B (CG12010), mRNA 
0   NM_168100.1  CG32238-RA (CG32238), mRNA 
0   NM_143372.1  CG9995-RA (htt), mRNA 
0   NM_176458.2  CG4509-RB (CG4509), mRNA 
0   NM_078500.3  CG4317-RA (Mipp2), mRNA 
0   NM_137655.2  CG30149-RB (rig), mRNA 
0   NM_057353.3  CG9668-RA (Rh4), mRNA 
0   NM_144375.2  CG1652-RA (lectin-46Cb), mRNA 
0   NM_164717.1  CG10806-RA, transcript variant A (CG10806), mRNA 
0   NM_079319.2  CG4153-RA (eIF-2beta), mRNA 
0   NM_138093.2  CG4681-RA (CG4681), mRNA 
0   NM_143813.1  CG4163-RA (Cyp303a1), mRNA 
0   NM_142458.2  CG7670-RA (CG7670), mRNA 
0   NM_136135.2  CG10132-RA (CG10132), mRNA 
0   NM_130544.3  CG14622-RA, transcript variant A (DAAM), mRNA 
0   NM_166875.1  CG14622-RC, transcript variant C (DAAM), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
 
DC
 
DM
 
VM
 
VB
 
Caspase-3 signal
N
 
DB
 
DC
 
DM
 
VM
 
VB
 
Dcompartment   Penetrance
     

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