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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 9630R-2 
 Symbol CG9630  Full Name CG9630 
 CG No CG9630  Old CG No CG9630 
 Synonyms DmRH16, cg9630, CG9630 
 Accession No (Link to NCBI) NM_141520.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees larval lethal 
 Map Viewer
 Reference
[Please submit your publication]
Ohhara Y, Nakamura A, Kato Y, Yamakawa-Kobayashi K.
Chaperonin TRiC/CCT supports mitotic exit and entry into endocycle in Drosophila.
PLoS Genet (2019) 15(4) e1008121 [ PubMed ID = 31034473 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCCGGAAGGATGTCTCAGCGGA 
 Primer Seq. 3'
aatctagaggtaccCGGTAGTCTGTGTGGCGGAAA 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CCGGAAGGAT GTCTCAGCGG AGGCTGTTAC TGGTAGTGGT AAAACGCTAG CCTTCCTTGT 
0061 GCCCATGCTA GAAATCCTCC AGAGACGNGC ACAAGGAGAC CTCGTGGGGC CCCAAGGAAA 
0121 TAGGTGCCCT CGTCATCTCA CCAACCCGGG AACTGGCGCG CCAAATCTCC GAGGTCCTAG 
0181 CCCAGTTTTT GGAACACGAA GACCTTGGAG CACCTGAATC AACAGTTGAT TCGTAGGCGG 
0241 CGAACAGCAT TGAAGAGGAC ATTGCCACGC TCGCGTATCG GGAAACGCCG TGTATACTGG 
0301 TGTGCACTCC CGGTCGGCTG GAGGATCTAT TTCAGCGCAA AGGAGATGAT CTTAATCTGG 
0361 CGGCTCAAGT GAAGAGTTTG GAGTTTCTCG TCTTAGACGA AGCTGACCGC CTGTTGGACT 
0421 TGGGCTTTAA AACAAGTGTA AATAACATAC TGGGCTATCT GCCCCACCAA CGTCGAACTG 
0481 GGCTCTTTTC CGCCACACAG ACTACCG 
 in silico PCR Fragment
0001 CCGGAAGGAT GTCTCAGCGG AGGCTGTTAC TGGTAGTGGT AAAACGCTAG CCTTCCTTGT 
0061 GCCCATGCTA GAAATCCTCC AGAGACG-GC ACAAGGAGAC CCCGTGGGGC CCCAAGGAAA 
0121 TAGGTGCCCT CGTCATCTCA CCAACCCGGG AACTGGCGCG CCAAATCTCC GAGGTCCTAG 
0181 CCCAGTTTTT GGAACACGAA GA-CTTGGAG CACCTGAATC AACAGTTGAT T-GTAGGCGG 
0241 C-AACAGCAT TGAAGAGGAC ATTGCCACGC T-GCGTA--G GGAAACGCCG TGTATACTGG 
0301 TGTGCACTCC CGGTCGGCTG GAGGATCTAT TTCAGCGCAA AGGAGATGAT CTTAATCTGG 
0361 CGGCTCAAGT GAAGAGTTTG GAGTTTCTCG TCTTAGACGA AGCTGACCGC CTGTTGGACT 
0421 TGGGCTTTAA AACAAGTGTA AATAACATAC TGGGCTATCT GCCCCGCCAA CGTCGAACTG 
0481 GGCTCTTTTC CGCCACACAG ACTACCG 
 Assemble Data

9630R-2.IR_full       1   CCGGAAGGATGTCTCAGCGGAGGCTGTTACTGGTAGTGGTAAAACGCTAGCCTTCCTTGT 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9630R-2.in silico     1   CCGGAAGGATGTCTCAGCGGAGGCTGTTACTGGTAGTGGTAAAACGCTAGCCTTCCTTGT 60


9630R-2.IR_full       61  GCCCATGCTAGAAATCCTCCAGAGACGNGCACAAGGAGACCTCGTGGGGCCCCAAGGAAA 120
                          ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
9630R-2.in silico     61  GCCCATGCTAGAAATCCTCCAGAGACG-GCACAAGGAGACCCCGTGGGGCCCCAAGGAAA 120


9630R-2.IR_full       121 TAGGTGCCCTCGTCATCTCACCAACCCGGGAACTGGCGCGCCAAATCTCCGAGGTCCTAG 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9630R-2.in silico     121 TAGGTGCCCTCGTCATCTCACCAACCCGGGAACTGGCGCGCCAAATCTCCGAGGTCCTAG 180


9630R-2.IR_full       181 CCCAGTTTTTGGAACACGAAGACCTTGGAGCACCTGAATCAACAGTTGATTCGTAGGCGG 240
                          |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
9630R-2.in silico     181 CCCAGTTTTTGGAACACGAAGA-CTTGGAGCACCTGAATCAACAGTTGATT-GTAGGCGG 240


9630R-2.IR_full       241 CGAACAGCATTGAAGAGGACATTGCCACGCTCGCGTATCGGGAAACGCCGTGTATACTGG 300
                          | ||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||
9630R-2.in silico     241 C-AACAGCATTGAAGAGGACATTGCCACGCT-GCGTA--GGGAAACGCCGTGTATACTGG 300


9630R-2.IR_full       301 TGTGCACTCCCGGTCGGCTGGAGGATCTATTTCAGCGCAAAGGAGATGATCTTAATCTGG 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9630R-2.in silico     301 TGTGCACTCCCGGTCGGCTGGAGGATCTATTTCAGCGCAAAGGAGATGATCTTAATCTGG 360


9630R-2.IR_full       361 CGGCTCAAGTGAAGAGTTTGGAGTTTCTCGTCTTAGACGAAGCTGACCGCCTGTTGGACT 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9630R-2.in silico     361 CGGCTCAAGTGAAGAGTTTGGAGTTTCTCGTCTTAGACGAAGCTGACCGCCTGTTGGACT 420


9630R-2.IR_full       421 TGGGCTTTAAAACAAGTGTAAATAACATACTGGGCTATCTGCCCCACCAACGTCGAACTG 480
                          ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
9630R-2.in silico     421 TGGGCTTTAAAACAAGTGTAAATAACATACTGGGCTATCTGCCCCGCCAACGTCGAACTG 480


9630R-2.IR_full       481 GGCTCTTTTCCGCCACACAGACTACCG 507
                          |||||||||||||||||||||||||||
9630R-2.in silico     481 GGCTCTTTTCCGCCACACAGACTACCG 507

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_141520.2  CG9630-RA (CG9630), mRNA 
0   NM_134864.3  CG2848-RA (Trn-SR), mRNA 
0   NM_001042904.1  CG15148-RB, transcript variant B (btv), mRNA 
0   NM_001042905.1  CG15148-RC, transcript variant C (btv), mRNA 
0   NM_136013.1  CG15148-RA, transcript variant A (btv), mRNA 
0   NM_169036.1  CG31543-RC, transcript variant C (Hph), mRNA 
0   NM_141268.2  CG31543-RA, transcript variant A (Hph), mRNA 
0   NM_169037.1  CG31543-RB, transcript variant B (Hph), mRNA 
0   NM_136679.3  CG1665-RA (CG1665), mRNA 
0   NM_001038747.1  CG32717-RF, transcript variant F (sdt), mRNA 
0   NM_132235.2  CG32717-RB, transcript variant B (sdt), mRNA 
0   NM_206653.1  CG32717-RE, transcript variant E (sdt), mRNA 
0   NM_132236.3  CG32717-RA, transcript variant A (sdt), mRNA 
0   NM_001042798.1  CG32717-RH, transcript variant H (sdt), mRNA 
0   NM_206652.1  CG32717-RD, transcript variant D (sdt), mRNA 
0   NM_132017.1  CG3160-RA (CG3160), mRNA 
0   NM_163890.1  CG32491-RE, transcript variant E (mod(mdg4)), mRNA 
0   NM_169991.1  CG6375-RB, transcript variant B (pit), mRNA 
0   NM_079722.2  CG6375-RA, transcript variant A (pit), mRNA 
0   NM_141091.1  CG11248-RA, transcript variant A (CG11248), mRNA 
0   NM_168934.1  CG11248-RB, transcript variant B (CG11248), mRNA 
0   NM_164716.1  CG31632-RA (CG31632), mRNA 
0   NM_167016.1  CG6998-RD, transcript variant D (ctp), mRNA 
0   NM_165911.1  CG8819-RA, transcript variant A (achi), mRNA 
0   NM_165912.1  CG8819-RC, transcript variant C (achi), mRNA 
0   NM_080336.3  CG6998-RA, transcript variant A (ctp), mRNA 
0   NM_167015.2  CG6998-RC, transcript variant C (ctp), mRNA 
0   NM_167014.1  CG6998-RB, transcript variant B (ctp), mRNA 
0   13  NM_079488.3  CG9054-RA (Ddx1), mRNA 
0   NM_001032000.1  CG14681-RB, transcript variant B (CG14681), mRNA 

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