National Institute of Genetics
Contact us      Quick Search       
NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -
Home Home
Japanese | English  
NIG-RNAi Strains Detail
Request : Click the "Order" button to request for this stock   request request_help.gif
Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 9531R-2 
 Symbol CG9531  Full Name CG9531 
 CG No CG9531  Old CG No CG9531 
 Synonyms CG9531 
 Accession No (Link to NCBI) NM_135187.3 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgATGCTCAGACAACTGACACGG 
 Primer Seq. 3'
aatctagaggtaccAGACTGTGTAGCATGGACAAG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 ATGCTCAGAC AACTGACACG GTCAATGGGC CCGACCTCGC GGCTGCTTAG GCAGGTCAAC 
0061 TATGGCACAA ATGCCCCAGC TGGCACCCAC ATTCCCGTGA CCAAGGCCCT GGAAATTGGA 
0121 CAGTGGGAGG AAAANGCTCA AGGCCGCCGG CGTCGAGGAC AGGAAGTTCA ACGTGAAATG 
0181 CATCGTGTCG CATGTCCTGA AGCAGAAGTT TAGTTCGGTT CCTGACTCAT TTGACCAGCT 
0241 GCAGCTAAAT CCCGGCCAGC TGGCGGATTT CGAGCGCTTC CTGGAGGCCC GTTGTGCCCG 
0301 CATGCCGTTG CAGCACATCA TTGGCGAGTG GGACTTCATG GACATTACGC TGAAGACATC 
0361 GCCGTCGGTC TTCATTCCAC GCCCCGAAAC GGAGGAGTTT ATGCGCCTGG TGATCGATGA 
0421 TCACAAGAAC GCAAAGCACG TCGATCTTTT GGAGGTGGGC TGCGGCTCGG GCGCCATGTC 
0481 CTTGTCCATG CTACACAGTC T 
 in silico PCR Fragment
0001 ATGCTCAGAC AACTGACACG GTCAATGGGC CCGACCTCGC GGCTGCTTAA GCAGGTCAAC 
0061 TATGGCACAA ATGCCCCAGC TGGCACCCAC ATTCCCGTGA CCAAGGCCCT GGAAATTGGA 
0121 CAGTGGGAGG AAAA-GCTCA AGGCCGCCGG CGTCGAGGAC AGGAAGTTCA ACGTGAAATG 
0181 CATCGTGTCG CATGTCCTGA AGCAGAAGTT TAGTTCGGTT CCTGACTCAT TTGACCAGCT 
0241 GCAGCTAAAT CCCGGCCAGC TGGCGGATTT CGAGCGCTTC CTGGAGGCCC GTTGTGCCCG 
0301 CATGCCGTTG CAGCACATCA TTGGCGAGTG GGACTTCATG GACATTACGC TGAAGACATC 
0361 GCCGTCGGTC TTCATTCCAC GCCCCGAAAC GGAGGAGTTT ATGCGCCTGG TGATCGATGA 
0421 TCACAAGAAC GCAAAGCACG TCGATCTTTT GGAGGTGGGC TGCGGCTCGG GCGCCATGTC 
0481 CTTGTCCATG CTACACAGTC T 
 Assemble Data

9531R-2.IR_full       1   ATGCTCAGACAACTGACACGGTCAATGGGCCCGACCTCGCGGCTGCTTAGGCAGGTCAAC 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
9531R-2.in silico     1   ATGCTCAGACAACTGACACGGTCAATGGGCCCGACCTCGCGGCTGCTTAAGCAGGTCAAC 60


9531R-2.IR_full       61  TATGGCACAAATGCCCCAGCTGGCACCCACATTCCCGTGACCAAGGCCCTGGAAATTGGA 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9531R-2.in silico     61  TATGGCACAAATGCCCCAGCTGGCACCCACATTCCCGTGACCAAGGCCCTGGAAATTGGA 120


9531R-2.IR_full       121 CAGTGGGAGGAAAANGCTCAAGGCCGCCGGCGTCGAGGACAGGAAGTTCAACGTGAAATG 180
                          |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
9531R-2.in silico     121 CAGTGGGAGGAAAA-GCTCAAGGCCGCCGGCGTCGAGGACAGGAAGTTCAACGTGAAATG 180


9531R-2.IR_full       181 CATCGTGTCGCATGTCCTGAAGCAGAAGTTTAGTTCGGTTCCTGACTCATTTGACCAGCT 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9531R-2.in silico     181 CATCGTGTCGCATGTCCTGAAGCAGAAGTTTAGTTCGGTTCCTGACTCATTTGACCAGCT 240


9531R-2.IR_full       241 GCAGCTAAATCCCGGCCAGCTGGCGGATTTCGAGCGCTTCCTGGAGGCCCGTTGTGCCCG 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9531R-2.in silico     241 GCAGCTAAATCCCGGCCAGCTGGCGGATTTCGAGCGCTTCCTGGAGGCCCGTTGTGCCCG 300


9531R-2.IR_full       301 CATGCCGTTGCAGCACATCATTGGCGAGTGGGACTTCATGGACATTACGCTGAAGACATC 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9531R-2.in silico     301 CATGCCGTTGCAGCACATCATTGGCGAGTGGGACTTCATGGACATTACGCTGAAGACATC 360


9531R-2.IR_full       361 GCCGTCGGTCTTCATTCCACGCCCCGAAACGGAGGAGTTTATGCGCCTGGTGATCGATGA 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9531R-2.in silico     361 GCCGTCGGTCTTCATTCCACGCCCCGAAACGGAGGAGTTTATGCGCCTGGTGATCGATGA 420


9531R-2.IR_full       421 TCACAAGAACGCAAAGCACGTCGATCTTTTGGAGGTGGGCTGCGGCTCGGGCGCCATGTC 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9531R-2.in silico     421 TCACAAGAACGCAAAGCACGTCGATCTTTTGGAGGTGGGCTGCGGCTCGGGCGCCATGTC 480


9531R-2.IR_full       481 CTTGTCCATGCTACACAGTCT 501
                          |||||||||||||||||||||
9531R-2.in silico     481 CTTGTCCATGCTACACAGTCT 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_135187.3  CG9531-RA (CG9531), mRNA 
0   NM_142256.2  CG5478-RA (CG5478), mRNA 
0   NM_142225.2  CG5404-RA (CG5404), mRNA 
0   NM_132571.1  CG15731-RA (CG15731), mRNA 
0   NM_143114.1  CG10514-RA (CG10514), mRNA 
0   NM_167828.1  CG32343-RA (CG32343), mRNA 
0   NM_078989.2  CG12369-RA, transcript variant A (Lac), mRNA 
0   NM_165906.1  CG12369-RB, transcript variant B (Lac), mRNA 
0   NM_165490.1  CG3427-RA (Epac), mRNA 
0   NM_001014464.1  CG10033-RJ, transcript variant J (for), mRNA 
0   NM_205905.1  CG10033-RF, transcript variant F (for), mRNA 
0   NM_058141.3  CG10033-RC, transcript variant C (for), mRNA 
0   NM_205907.1  CG10033-RG, transcript variant G (for), mRNA 
0   NM_058142.3  CG10033-RE, transcript variant E (for), mRNA 
0   NM_134319.3  CG10033-RD, transcript variant D (for), mRNA 
0   NM_140252.1  CG10361-RA (CG10361), mRNA 
0   NM_001014652.1  CG10693-RP, transcript variant P (slo), mRNA 
0   NM_001014651.1  CG10693-RQ, transcript variant Q (slo), mRNA 
0   NM_001014663.1  CG10693-RE, transcript variant E (slo), mRNA 
0   NM_001014664.1  CG10693-RD, transcript variant D (slo), mRNA 
0   NM_170164.1  CG10693-RB, transcript variant B (slo), mRNA 
0   NM_206566.1  CG10693-RC, transcript variant C (slo), mRNA 
0   NM_001014662.1  CG10693-RF, transcript variant F (slo), mRNA 
0   NM_001014654.1  CG10693-RN, transcript variant N (slo), mRNA 
0   NM_001014655.1  CG10693-RM, transcript variant M (slo), mRNA 
0   NM_001014661.1  CG10693-RG, transcript variant G (slo), mRNA 
0   NM_001014653.1  CG10693-RO, transcript variant O (slo), mRNA 
0   NM_001014660.1  CG10693-RH, transcript variant H (slo), mRNA 
0   NM_001014658.1  CG10693-RJ, transcript variant J (slo), mRNA 
0   NM_001014659.1  CG10693-RI, transcript variant I (slo), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
 
DC
++ 
DM
 
VM
 
VB
 
Caspase-3 signal
N
DB
DC
DM
VM
 
VB
 
Dcompartment   Penetrance
     

SHIGEN - SHared Information of GENetic resources - National Institute of Genetics (NIG)
Copyright (c) National Institute of Genetics (NIG)
All rights reserved.
The NIG-Fly is a part of the National BioResource Project which started in 2002.