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Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
9484R-1 |
| Symbol |
hyd |
Full Name |
hyperplastic discs |
| CG No |
CG9484 |
Old CG No |
CG9484 |
| Synonyms |
HYD, l(3)c43, c43, l(3)C43-3, l[[3]]c43, l(3)C43, l(3)SG33, l(3)85Ea, CG9484, hyd |
| Accession No (Link to NCBI) |
NM_079572.2 |
| Inserted Chr. |
lll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
|
Reference
[Please submit your publication]
|
Park J, Lee J, Kim JH, Lee J, Park H, Lim C.
ZNF598 co-translationally titrates poly(GR) protein implicated in the pathogenesis of C9ORF72-associated ALS/FTD.
Nucleic Acids Res (2021) 49(19) 11294-11311
[
PubMed ID = 34551427
]
[
RRC reference
]
Cho Y, Lai CM, Lin KY, Hsu HJ.
A Targeted RNAi Screen Reveals Drosophila Female-Sterile Genes That Control the Size of Germline Stem Cell Niche During Development.
G3 (Bethesda) (2018) 8(7) 2345-2354
[
PubMed ID = 29764959
]
[
RRC reference
]
Du J, Zhang J, Su Y, Liu M, Ospina JK, Yang S, Zhu AJ.
In vivo RNAi screen reveals neddylation genes as novel regulators of Hedgehog signaling.
PLoS One (2011) 6(9) e24168
[
PubMed ID = 21931660
]
[
RRC reference
]
|
| Comment |
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgAAGGATTCGTGAAGTGTCGGA |
| Primer Seq. 3' |
aatctagaggtaccTAACATCGAGGTTGGTGCGCT |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 AAGGATTCGT GAAGTGTCGG ATAAGGTGAA CCGATTTGGT TATGGCAGCC ATCGCATATT
0061 CGAACAGTTG AAAATTCCAG TGAAGGAAGT CGTCATTGGT CCCGCGCACA TTGGAGTTTT
0121 ACTGGAGGAT GGCAAGGCAT TCCGCGTGTC CTTTTCTATA AATTCTGAGA AACTTGACTT
0181 GACCAAATCA GACGCAAAAT GTTCCACCAG TGGTGGCAGC GGAACGGCCA GTGCTTCGAA
0241 AGCCCCATCC TCATCCCGAC CGATGGCCCG CTCAANGAGC ACGCCTGCTG CGCGCAACAG
0301 GTCGCTCCAA TTCCACCGGA CAGGGGTCCG GATCTCGTAG CACAGGGGTC ATCATTGGAG
0361 GCAGTACATC GAGCCGACCC TTAGTAACAG TTCCGGCTAC ATATGTGCCG GAGGAGCTCA
0421 TATCCCAAGC AGAGGTGGTT CTACAGGGCA AGAGCAGAAA TCTCATAATT AGAGAATTAC
0481 AGCGCACCAA CCTCGATGTT A |
| in silico PCR Fragment |
0001 AAGGATTCGT GAAGTGTCGG ATAAGGTGAA CCGATTTGGT TATGGCAGCC ATCGCATATT
0061 CGAACAGTTG AAAATTCCAG TGAAGGAAGT CGTCATTGGT CCCGCGCACA TTGGAGTTTT
0121 ACTGGAGGAT GGCAAGGCAT TCCGCGTGTC CTTTTCTATA AATTCTGAGA AACTTGACTT
0181 GACCAAATCA GACGCAAAAT GTTCCACCAG TGGTGGCAGC GGAACGGCCA GTGCTTCGAA
0241 AGCCCCATCC TCATCCCGAC CGATGGCCCG CTCAA-GAGC ACGCCTGCTG CGCGCAACAG
0301 GTCGCTCCAA TTCCACCGGA CAGGGGTCCG GATCTCGTAG CACAGGGGTC ATCATTGGAG
0361 GCAGTACATC GAGCCGACCC TTAGTAACAG TTCCGGCTAC ATATGTGCCG GAGGAGCTCA
0421 TATCCCAAGC AGAGGTGGTT CTACAGGGCA AGAGCAGAAA TCTCATAATT AGAGAATTAC
0481 AGCGCACCAA CCTCGATGTT A |
| Assemble Data |
9484R-1.IR_full 1 AAGGATTCGTGAAGTGTCGGATAAGGTGAACCGATTTGGTTATGGCAGCCATCGCATATT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9484R-1.in silico 1 AAGGATTCGTGAAGTGTCGGATAAGGTGAACCGATTTGGTTATGGCAGCCATCGCATATT 60
9484R-1.IR_full 61 CGAACAGTTGAAAATTCCAGTGAAGGAAGTCGTCATTGGTCCCGCGCACATTGGAGTTTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9484R-1.in silico 61 CGAACAGTTGAAAATTCCAGTGAAGGAAGTCGTCATTGGTCCCGCGCACATTGGAGTTTT 120
9484R-1.IR_full 121 ACTGGAGGATGGCAAGGCATTCCGCGTGTCCTTTTCTATAAATTCTGAGAAACTTGACTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9484R-1.in silico 121 ACTGGAGGATGGCAAGGCATTCCGCGTGTCCTTTTCTATAAATTCTGAGAAACTTGACTT 180
9484R-1.IR_full 181 GACCAAATCAGACGCAAAATGTTCCACCAGTGGTGGCAGCGGAACGGCCAGTGCTTCGAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9484R-1.in silico 181 GACCAAATCAGACGCAAAATGTTCCACCAGTGGTGGCAGCGGAACGGCCAGTGCTTCGAA 240
9484R-1.IR_full 241 AGCCCCATCCTCATCCCGACCGATGGCCCGCTCAANGAGCACGCCTGCTGCGCGCAACAG 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
9484R-1.in silico 241 AGCCCCATCCTCATCCCGACCGATGGCCCGCTCAA-GAGCACGCCTGCTGCGCGCAACAG 300
9484R-1.IR_full 301 GTCGCTCCAATTCCACCGGACAGGGGTCCGGATCTCGTAGCACAGGGGTCATCATTGGAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9484R-1.in silico 301 GTCGCTCCAATTCCACCGGACAGGGGTCCGGATCTCGTAGCACAGGGGTCATCATTGGAG 360
9484R-1.IR_full 361 GCAGTACATCGAGCCGACCCTTAGTAACAGTTCCGGCTACATATGTGCCGGAGGAGCTCA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9484R-1.in silico 361 GCAGTACATCGAGCCGACCCTTAGTAACAGTTCCGGCTACATATGTGCCGGAGGAGCTCA 420
9484R-1.IR_full 421 TATCCCAAGCAGAGGTGGTTCTACAGGGCAAGAGCAGAAATCTCATAATTAGAGAATTAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9484R-1.in silico 421 TATCCCAAGCAGAGGTGGTTCTACAGGGCAAGAGCAGAAATCTCATAATTAGAGAATTAC 480
9484R-1.IR_full 481 AGCGCACCAACCTCGATGTTA 501
|||||||||||||||||||||
9484R-1.in silico 481 AGCGCACCAACCTCGATGTTA 501
|
| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
2 |
NM_079572.2 |
CG9484-RA (hyd), mRNA |
| 0.2 |
1 |
3 |
3 |
2 |
NM_057471.4 |
CG4260-RA, transcript variant A (alpha-Adaptin), mRNA |
| 0.2 |
1 |
3 |
3 |
2 |
NM_205885.1 |
CG4260-RB, transcript variant B (alpha-Adaptin), mRNA |
| 0 |
0 |
2 |
2 |
3 |
NM_142674.2 |
CG10827-RA (CG10827), mRNA |
| 0 |
0 |
2 |
2 |
2 |
NM_131919.1 |
CG15376-RA (CG15376), mRNA |
| 0 |
0 |
1 |
4 |
4 |
NM_078806.2 |
CG4651-RA, transcript variant A (RpL13), mRNA |
| 0 |
0 |
1 |
4 |
4 |
NM_001038802.1 |
CG4651-RB, transcript variant B (RpL13), mRNA |
| 0 |
0 |
1 |
3 |
4 |
NM_057853.2 |
CG2189-RA (Dfd), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_169440.1 |
CG6977-RA (Cad87A), mRNA |
| 0 |
0 |
1 |
2 |
14 |
NM_166018.1 |
CG18076-RC, transcript variant C (shot), mRNA |
| 0 |
0 |
1 |
2 |
14 |
NM_079009.2 |
CG18076-RA, transcript variant A (shot), mRNA |
| 0 |
0 |
1 |
2 |
14 |
NM_166017.1 |
CG18076-RE, transcript variant E (shot), mRNA |
| 0 |
0 |
1 |
2 |
14 |
NM_166016.1 |
CG18076-RB, transcript variant B (shot), mRNA |
| 0 |
0 |
1 |
2 |
14 |
NM_166019.1 |
CG18076-RH, transcript variant H (shot), mRNA |
| 0 |
0 |
1 |
2 |
14 |
NM_166015.1 |
CG18076-RG, transcript variant G (shot), mRNA |
| 0 |
0 |
0 |
5 |
6 |
NM_134517.2 |
CG15618-RA (CG15618), mRNA |
| 0 |
0 |
0 |
4 |
10 |
NM_164790.1 |
CG31605-RG, transcript variant G (Bsg), mRNA |
| 0 |
0 |
0 |
4 |
6 |
NM_206581.1 |
CG2304-RC, transcript variant C (Trc8), mRNA |
| 0 |
0 |
0 |
4 |
6 |
NM_170413.2 |
CG2304-RA, transcript variant A (Trc8), mRNA |
| 0 |
0 |
0 |
4 |
6 |
NM_170414.1 |
CG2304-RB, transcript variant B (Trc8), mRNA |
| 0 |
0 |
0 |
4 |
6 |
NM_206580.1 |
CG2304-RD, transcript variant D (Trc8), mRNA |
| 0 |
0 |
0 |
4 |
5 |
NM_140990.1 |
CG13253-RA (CG13253), mRNA |
| 0 |
0 |
0 |
4 |
4 |
NM_166257.1 |
CG5785-RB (thr), mRNA |
| 0 |
0 |
0 |
4 |
2 |
NM_206235.1 |
CG13921-RB, transcript variant B (CG13921), mRNA |
| 0 |
0 |
0 |
4 |
2 |
NM_139399.1 |
CG13921-RA, transcript variant A (CG13921), mRNA |
| 0 |
0 |
0 |
3 |
8 |
NM_139659.1 |
CG11357-RA (CG11357), mRNA |
| 0 |
0 |
0 |
3 |
6 |
NM_137538.1 |
CG15100-RA (CG15100), mRNA |
| 0 |
0 |
0 |
3 |
5 |
NM_138163.1 |
CG7036-RA, transcript variant A (rno), mRNA |
| 0 |
0 |
0 |
3 |
5 |
NM_206222.1 |
CG7036-RB, transcript variant B (rno), mRNA |
| 0 |
0 |
0 |
3 |
5 |
NM_136045.2 |
CG10414-RA (CG10414), mRNA |
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