|
Notice:
|
|
Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
|
|
| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
|
| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
9379R-3 |
| Symbol |
by |
Full Name |
blistery |
| CG No |
CG9379 |
Old CG No |
CG9379 |
| Synonyms |
3R-B, CG9379, CT26639, BcDNA:RE65113, by |
| Accession No (Link to NCBI) |
NM_141644.2 |
| Inserted Chr. |
ll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
|
Reference
[Please submit your publication]
|
Park J, Lee J, Kim JH, Lee J, Park H, Lim C.
ZNF598 co-translationally titrates poly(GR) protein implicated in the pathogenesis of C9ORF72-associated ALS/FTD.
Nucleic Acids Res (2021) 49(19) 11294-11311
[
PubMed ID = 34551427
]
[
RRC reference
]
Park SH, Lee CW, Lee JH, Park JY, Roshandell M, Brennan CA, Choe KM.
Requirement for and polarized localization of integrin proteins during Drosophila wound closure.
Mol Biol Cell (2018) 29(18) 2137-2147
[
PubMed ID = 29995573
]
[
RRC reference
]
Cho Y, Lai CM, Lin KY, Hsu HJ.
A Targeted RNAi Screen Reveals Drosophila Female-Sterile Genes That Control the Size of Germline Stem Cell Niche During Development.
G3 (Bethesda) (2018) 8(7) 2345-2354
[
PubMed ID = 29764959
]
[
RRC reference
]
Fairchild MJ, Islam F, Tanentzapf G.
Identification of genetic networks that act in the somatic cells of the testis to mediate the developmental program of spermatogenesis.
PLoS Genet (2017) 13(9) e1007026
[
PubMed ID = 28957323
]
[
RRC reference
]
Perkins AD, Lee MJ, Tanentzapf G.
The systematic identification of cytoskeletal genes required for Drosophila melanogaster muscle maintenance.
Sci Data (2014) 1 140002
[
PubMed ID = 25977760
]
[
RRC reference
]
|
| Comment |
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgACCAACACGTCTAACGAGCCC |
| Primer Seq. 3' |
aatctagaggtaccGTTCCATGGTCCGCCGATTGA |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 ACCAACACGT CTAACGAGCC CTTTGCTGGT GCGCAAAACG CTGGGCAATG CCGTTAGTCC
0061 CACCAGTTCG ACCAATACCA ACACCATAGC CAATACATAC CACTACAGGT CGAGCAGCGC
0121 AACGCCGACG CCGGTGAGAG ATAATTTCGA GCAGCTGCTG CGGGAGCGAC GCGNAAAAGG
0181 TCTACAATGA ATATAGGAAT CTGGATAGGG AGTCGTCCGG GGAGCGGGCC AGAGTGGCAC
0241 CCGCTNCGCC GCAGAGGCAA TACTACCCGA GCGATGGCTA TGGAATTGGG CTGAAGAACG
0301 ATAGCAATGG AACCCTATAC CGCAAGAGCC CCTCGTCTAA TGGGAAATCA ACGAAATACA
0361 ACTACGATTT TGAGTTCAAT CTGAATCTGG ATGATGTTAG GCCCGAACCT ACACCGTATA
0421 CCACGAGGAA TATTCACTTC GAGGATCTGC GGCTGGATCA GGATGTGCCA GATGGCGTGG
0481 TCAATCGGCG GACCATGGAA C |
| in silico PCR Fragment |
0001 ACCAACACGT CTAACGAGCC CTTTGCTGGT GCGCAAAACG CTGGGCAATG CCGTTAGTCC
0061 CACCAGTTCG ACCAATACCA ACACCATAGC CAATACATAC CACTACACGT CGAGCAGCGC
0121 AACGCCGACG CCGGTGAGAG ATAATTTCGA GCAGCTGCTG CGGGAGCGAC GCG-AAAAGG
0181 TCTACAATGA ATATAGGAAT CTGGATAGGG AGTCGTCCGG GGAGCGGGCC AGAGTGGCAC
0241 CCGCTCCGCC GCAGAGGCAA TACTACCCGA GCGATGGCTA TGGAATTGGG CTGAAGAACG
0301 ATAGCAATGG AACCCTATAC CGCAAGAGCC CCTCGTCTAA TGGGAAATCA ACGAAATACA
0361 ACTACGATTT TGAGTTCAAT CTGAATCTGG ATGATGTTAG GCCCGAACCT ACACCGTATA
0421 CCACGAGGAA TATTCACTTC GAGGATCTGC GGCTGGATCA GGATGTGCCA GATGGCGTGG
0481 TCAATCGGCG GACCATGGAA C |
| Assemble Data |
9379R-3.IR_full 1 ACCAACACGTCTAACGAGCCCTTTGCTGGTGCGCAAAACGCTGGGCAATGCCGTTAGTCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9379R-3.in silico 1 ACCAACACGTCTAACGAGCCCTTTGCTGGTGCGCAAAACGCTGGGCAATGCCGTTAGTCC 60
9379R-3.IR_full 61 CACCAGTTCGACCAATACCAACACCATAGCCAATACATACCACTACAGGTCGAGCAGCGC 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
9379R-3.in silico 61 CACCAGTTCGACCAATACCAACACCATAGCCAATACATACCACTACACGTCGAGCAGCGC 120
9379R-3.IR_full 121 AACGCCGACGCCGGTGAGAGATAATTTCGAGCAGCTGCTGCGGGAGCGACGCGNAAAAGG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
9379R-3.in silico 121 AACGCCGACGCCGGTGAGAGATAATTTCGAGCAGCTGCTGCGGGAGCGACGCG-AAAAGG 180
9379R-3.IR_full 181 TCTACAATGAATATAGGAATCTGGATAGGGAGTCGTCCGGGGAGCGGGCCAGAGTGGCAC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9379R-3.in silico 181 TCTACAATGAATATAGGAATCTGGATAGGGAGTCGTCCGGGGAGCGGGCCAGAGTGGCAC 240
9379R-3.IR_full 241 CCGCTNCGCCGCAGAGGCAATACTACCCGAGCGATGGCTATGGAATTGGGCTGAAGAACG 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
9379R-3.in silico 241 CCGCTCCGCCGCAGAGGCAATACTACCCGAGCGATGGCTATGGAATTGGGCTGAAGAACG 300
9379R-3.IR_full 301 ATAGCAATGGAACCCTATACCGCAAGAGCCCCTCGTCTAATGGGAAATCAACGAAATACA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9379R-3.in silico 301 ATAGCAATGGAACCCTATACCGCAAGAGCCCCTCGTCTAATGGGAAATCAACGAAATACA 360
9379R-3.IR_full 361 ACTACGATTTTGAGTTCAATCTGAATCTGGATGATGTTAGGCCCGAACCTACACCGTATA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9379R-3.in silico 361 ACTACGATTTTGAGTTCAATCTGAATCTGGATGATGTTAGGCCCGAACCTACACCGTATA 420
9379R-3.IR_full 421 CCACGAGGAATATTCACTTCGAGGATCTGCGGCTGGATCAGGATGTGCCAGATGGCGTGG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9379R-3.in silico 421 CCACGAGGAATATTCACTTCGAGGATCTGCGGCTGGATCAGGATGTGCCAGATGGCGTGG 480
9379R-3.IR_full 481 TCAATCGGCGGACCATGGAAC 501
|||||||||||||||||||||
9379R-3.in silico 481 TCAATCGGCGGACCATGGAAC 501
|
| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
0 |
NM_141644.2 |
CG9379-RA (by), mRNA |
| 0.2 |
1 |
2 |
2 |
2 |
NM_141833.2 |
CG6791-RB, transcript variant B (CG6791), mRNA |
| 0.2 |
1 |
2 |
2 |
2 |
NM_169403.1 |
CG6791-RA, transcript variant A (CG6791), mRNA |
| 0 |
0 |
2 |
4 |
12 |
NM_165334.1 |
CG2488-RA, transcript variant A (phr6-4), mRNA |
| 0 |
0 |
2 |
4 |
12 |
NM_057840.3 |
CG2488-RB, transcript variant B (phr6-4), mRNA |
| 0 |
0 |
2 |
4 |
2 |
NM_141680.1 |
CG16908-RA (CG16908), mRNA |
| 0 |
0 |
2 |
2 |
2 |
NM_135937.2 |
CG4930-RA (CG4930), mRNA |
| 0 |
0 |
2 |
2 |
2 |
NM_176293.1 |
CG33171-RC, transcript variant C (CG33171), mRNA |
| 0 |
0 |
2 |
2 |
2 |
NM_176294.2 |
CG33171-RE, transcript variant E (CG33171), mRNA |
| 0 |
0 |
2 |
2 |
2 |
NM_078666.2 |
CG8146-RA (Socs16D), mRNA |
| 0 |
0 |
1 |
5 |
13 |
NM_166873.1 |
CG3638-RB, transcript variant B (CG3638), mRNA |
| 0 |
0 |
1 |
5 |
13 |
NM_166874.1 |
CG3638-RA, transcript variant A (CG3638), mRNA |
| 0 |
0 |
1 |
5 |
13 |
NM_130541.3 |
CG3638-RC, transcript variant C (CG3638), mRNA |
| 0 |
0 |
1 |
5 |
13 |
NM_166872.1 |
CG3638-RD, transcript variant D (CG3638), mRNA |
| 0 |
0 |
1 |
3 |
2 |
NM_078677.2 |
CG6186-RA (Tsf1), mRNA |
| 0 |
0 |
1 |
3 |
2 |
NM_141353.1 |
CG15580-RA, transcript variant A (CG15580), mRNA |
| 0 |
0 |
1 |
3 |
2 |
NM_169124.1 |
CG15580-RB, transcript variant B (CG15580), mRNA |
| 0 |
0 |
1 |
2 |
6 |
NM_143352.1 |
CG12870-RA (CG12870), mRNA |
| 0 |
0 |
1 |
2 |
5 |
NM_168443.1 |
CG11799-RA, transcript variant A (Mnf), mRNA |
| 0 |
0 |
1 |
2 |
5 |
NM_140183.1 |
CG11799-RE, transcript variant E (Mnf), mRNA |
| 0 |
0 |
1 |
2 |
5 |
NM_168446.1 |
CG11799-RD, transcript variant D (Mnf), mRNA |
| 0 |
0 |
1 |
2 |
5 |
NM_168444.1 |
CG11799-RB, transcript variant B (Mnf), mRNA |
| 0 |
0 |
1 |
2 |
5 |
NM_168445.1 |
CG11799-RC, transcript variant C (Mnf), mRNA |
| 0 |
0 |
1 |
2 |
4 |
NM_136132.4 |
CG10084-RA, transcript variant A (swm), mRNA |
| 0 |
0 |
1 |
2 |
4 |
NM_165304.1 |
CG10084-RB, transcript variant B (swm), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_132479.2 |
CG1597-RA (CG1597), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_139619.1 |
CG1332-RA (CG1332), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_136439.2 |
CG11127-RA (CG11127), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_134582.2 |
CG32513-RA, transcript variant A (bves), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_206800.1 |
CG32513-RB, transcript variant B (bves), mRNA |
|
|
|
