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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
discarded
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
9359R-2 |
Symbol |
betaTub85D |
Full Name |
beta-Tubulin at 85D |
CG No |
CG9359 |
Old CG No |
CG9359 |
Synonyms |
beta-tub, betaTub85D, beta2, CG9359, BETA2, BETA 85D, D.m.BETA-85D, B2t, beta(2)Tu, beta2t, Dmbeta2, beta2tub, 2t, beta[[2]]-tubulin, beta85D, DTB4, ms(3)KK[D], betaTub2, beta-Tub85D, Tub, beta(2)Tub |
Accession No (Link to NCBI) |
NM_079566.3 |
Inserted Chr. |
lll |
Insertional Mutation |
lethal |
Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Sun T, Song Y, Dai J, Mao D, Ma M, Ni JQ, Liang X, Pastor-Pareja JC. Spectraplakin Shot Maintains Perinuclear Microtubule Organization in Drosophila Polyploid Cells. Dev Cell (2019) 49(5) 731-747.e7
[
PubMed ID = 31006649
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgACCTCGCGAGGATCGCAACAA |
Primer Seq. 3' |
aatctagaggtaccTCGTCTTCATCGAATTCGCCC |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 ACCTCGCGAG GATCGCAACA ATACCGGGCC CTTACCGTTC CGGAGCTGAC CCAGCAGATG
0061 TTCGATGCCA AGAACATGAT GGCTGCGTGC GATcCGCGAC ATGGTCGCTA NTCTGACCGT
0121 CGCCGCCATC TTCCGTGGCC GCATGTCTAT GAAGGAGGTG GACGAGCAGA TGCTCAACAT
0181 TCAGAACAAG AACAGCAGCT TCTTCGTGGA ATGGATCCCA AATAACTGCA AGACAGCGGT
0241 GTGCGATATT NCCGCCCAGA GGTCTCAAGA TGTCGGCCAC CTTCATTGGC AACTCCACCG
0301 CCATTCAGGA GCTATTCAAA CGGGTGTCGG AGCAGTTCAC CGCCATGTTC CGAAGGAAGG
0361 CCTTCTTGCA TTGGTACACC GGCGAGGGAA TGGACGAAAT GGAATTCACA GAGGCCGAGA
0421 GCAACATGAA CGACTTGGTT TCTGAATATC AGCAGTACCA GGAGGCGACT GCCGATGAGG
0481 AGGGCGAATT CGATGAAGAC GA |
in silico PCR Fragment |
0001 ACCTCGCGAG GATCGCAACA ATACCGGGCC CTTACCGTTC CGGAGCTGAC CCAGCAGATG
0061 TTCGATGCCA AGAACATGAT GGCTGCGTGC GATCCGCGAC ATGGTCGCTA -TCTGACCGT
0121 CGCCGCCATC TTCCGTGGCC GCATGTCCAT GAAGGAGGTG GACGAGCAGA TGCTCAACAT
0181 TCAGAACAAG AACAGCAGCT TCTTCGTGGA ATGGATCCCG AATAACTGCA AGACAGCGGT
0241 GTGCGATATT -CCGCCCAGA GGTCTCAAGA TGTCGGCCAC CTTCATTGGC AACTCCACCG
0301 CCATTCAGGA GCTATTCAAA CGGGTTTCGG AGCAGTTCAC CGCCATGTTC CGAAGGAAGG
0361 CCTTCTTGCA TTGGTACACC GGCGAGGGAA TGGACGAAAT GGAATTCACA GAGGCCGAGA
0421 GCAACATGAA CGACTTGGTT TCTGAATATC AGCAGTACCA GGAGGCGACT GCCGATGAGG
0481 AGGGCGAATT CGATGAAGAC GA |
Assemble Data |
9359R-2.IR_full 1 ACCTCGCGAGGATCGCAACAATACCGGGCCCTTACCGTTCCGGAGCTGACCCAGCAGATG 60
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9359R-2.in silico 1 ACCTCGCGAGGATCGCAACAATACCGGGCCCTTACCGTTCCGGAGCTGACCCAGCAGATG 60
9359R-2.IR_full 61 TTCGATGCCAAGAACATGATGGCTGCGTGCGATCCGCGACATGGTCGCTANTCTGACCGT 120
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9359R-2.in silico 61 TTCGATGCCAAGAACATGATGGCTGCGTGCGATCCGCGACATGGTCGCTA-TCTGACCGT 120
9359R-2.IR_full 121 CGCCGCCATCTTCCGTGGCCGCATGTCTATGAAGGAGGTGGACGAGCAGATGCTCAACAT 180
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9359R-2.in silico 121 CGCCGCCATCTTCCGTGGCCGCATGTCCATGAAGGAGGTGGACGAGCAGATGCTCAACAT 180
9359R-2.IR_full 181 TCAGAACAAGAACAGCAGCTTCTTCGTGGAATGGATCCCAAATAACTGCAAGACAGCGGT 240
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9359R-2.in silico 181 TCAGAACAAGAACAGCAGCTTCTTCGTGGAATGGATCCCGAATAACTGCAAGACAGCGGT 240
9359R-2.IR_full 241 GTGCGATATTNCCGCCCAGAGGTCTCAAGATGTCGGCCACCTTCATTGGCAACTCCACCG 300
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9359R-2.in silico 241 GTGCGATATT-CCGCCCAGAGGTCTCAAGATGTCGGCCACCTTCATTGGCAACTCCACCG 300
9359R-2.IR_full 301 CCATTCAGGAGCTATTCAAACGGGTGTCGGAGCAGTTCACCGCCATGTTCCGAAGGAAGG 360
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9359R-2.in silico 301 CCATTCAGGAGCTATTCAAACGGGTTTCGGAGCAGTTCACCGCCATGTTCCGAAGGAAGG 360
9359R-2.IR_full 361 CCTTCTTGCATTGGTACACCGGCGAGGGAATGGACGAAATGGAATTCACAGAGGCCGAGA 420
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9359R-2.in silico 361 CCTTCTTGCATTGGTACACCGGCGAGGGAATGGACGAAATGGAATTCACAGAGGCCGAGA 420
9359R-2.IR_full 421 GCAACATGAACGACTTGGTTTCTGAATATCAGCAGTACCAGGAGGCGACTGCCGATGAGG 480
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9359R-2.in silico 421 GCAACATGAACGACTTGGTTTCTGAATATCAGCAGTACCAGGAGGCGACTGCCGATGAGG 480
9359R-2.IR_full 481 AGGGCGAATTCGATGAAGACGA 502
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9359R-2.in silico 481 AGGGCGAATTCGATGAAGACGA 502
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
0 |
NM_079566.3 |
CG9359-RA (betaTub85D), mRNA |
8.92 |
43 |
84 |
109 |
84 |
NM_079071.2 |
CG9277-RB, transcript variant B (betaTub56D), mRNA |
8.92 |
43 |
84 |
109 |
84 |
NM_166357.1 |
CG9277-RC, transcript variant C (betaTub56D), mRNA |
8.92 |
43 |
84 |
109 |
84 |
NM_166355.2 |
CG9277-RD, transcript variant D (betaTub56D), mRNA |
8.92 |
43 |
84 |
109 |
84 |
NM_166356.1 |
CG9277-RA, transcript variant A (betaTub56D), mRNA |
4.56 |
22 |
62 |
82 |
122 |
NM_079118.2 |
CG3401-RA (betaTub60D), mRNA |
2.28 |
11 |
76 |
77 |
86 |
NM_143349.1 |
CG4869-RA (betaTub97EF), mRNA |
0.2 |
1 |
5 |
3 |
2 |
NM_057531.3 |
CG6863-RA, transcript variant A (tok), mRNA |
0.2 |
1 |
5 |
3 |
2 |
NM_170168.1 |
CG6863-RB, transcript variant B (tok), mRNA |
0 |
0 |
3 |
7 |
4 |
NM_079452.2 |
CG7395-RA (NPFR76F), mRNA |
0 |
0 |
3 |
5 |
4 |
NM_080320.2 |
CG3653-RB, transcript variant B (kirre), mRNA |
0 |
0 |
3 |
5 |
4 |
NM_166958.1 |
CG3653-RA, transcript variant A (kirre), mRNA |
0 |
0 |
2 |
8 |
2 |
NM_170440.1 |
CG7816-RA, transcript variant A (CG7816), mRNA |
0 |
0 |
2 |
8 |
2 |
NM_170445.1 |
CG7816-RG, transcript variant G (CG7816), mRNA |
0 |
0 |
2 |
8 |
2 |
NM_170444.1 |
CG7816-RF, transcript variant F (CG7816), mRNA |
0 |
0 |
2 |
8 |
2 |
NM_170443.1 |
CG7816-RE, transcript variant E (CG7816), mRNA |
0 |
0 |
2 |
8 |
2 |
NM_170441.1 |
CG7816-RC, transcript variant C (CG7816), mRNA |
0 |
0 |
2 |
8 |
2 |
NM_170442.1 |
CG7816-RD, transcript variant D (CG7816), mRNA |
0 |
0 |
2 |
3 |
7 |
NM_132543.1 |
CG10362-RA (CG10362), mRNA |
0 |
0 |
2 |
3 |
5 |
NM_057509.3 |
CG1956-RA (R), mRNA |
0 |
0 |
2 |
2 |
10 |
NM_141993.2 |
CG7518-RB, transcript variant B (CG7518), mRNA |
0 |
0 |
2 |
2 |
10 |
NM_169489.1 |
CG7518-RA, transcript variant A (CG7518), mRNA |
0 |
0 |
2 |
2 |
4 |
NM_078837.2 |
CG7820-RA (CAH1), mRNA |
0 |
0 |
2 |
2 |
4 |
NM_079739.2 |
CG10161-RB (eIF-3p66), mRNA |
0 |
0 |
1 |
7 |
2 |
NM_138155.1 |
CG13405-RA (CG13405), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_165585.1 |
CG12769-RB, transcript variant B (CG12769), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_136503.2 |
CG12769-RA, transcript variant A (CG12769), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_057970.3 |
CG6438-RA (amon), mRNA |
0 |
0 |
1 |
2 |
8 |
NM_167687.1 |
CG11943-RB, transcript variant B (CG11943), mRNA |
0 |
0 |
1 |
2 |
8 |
NM_134518.2 |
CG11943-RA, transcript variant A (CG11943), mRNA |
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