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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 9359R-2 
 Symbol betaTub85D  Full Name beta-Tubulin at 85D 
 CG No CG9359  Old CG No CG9359 
 Synonyms beta-tub, betaTub85D, beta2, CG9359, BETA2, BETA 85D, D.m.BETA-85D, B2t, beta(2)Tu, beta2t, Dmbeta2, beta2tub, 2t, beta[[2]]-tubulin, beta85D, DTB4, ms(3)KK[D], betaTub2, beta-Tub85D, Tub, beta(2)Tub 
 Accession No (Link to NCBI) NM_079566.3 
 Inserted Chr. lll 
 Insertional Mutation  lethal 
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Sun T, Song Y, Dai J, Mao D, Ma M, Ni JQ, Liang X, Pastor-Pareja JC.
Spectraplakin Shot Maintains Perinuclear Microtubule Organization in Drosophila Polyploid Cells.
Dev Cell (2019) 49(5) 731-747.e7 [ PubMed ID = 31006649 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgACCTCGCGAGGATCGCAACAA 
 Primer Seq. 3'
aatctagaggtaccTCGTCTTCATCGAATTCGCCC 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 ACCTCGCGAG GATCGCAACA ATACCGGGCC CTTACCGTTC CGGAGCTGAC CCAGCAGATG 
0061 TTCGATGCCA AGAACATGAT GGCTGCGTGC GATcCGCGAC ATGGTCGCTA NTCTGACCGT 
0121 CGCCGCCATC TTCCGTGGCC GCATGTCTAT GAAGGAGGTG GACGAGCAGA TGCTCAACAT 
0181 TCAGAACAAG AACAGCAGCT TCTTCGTGGA ATGGATCCCA AATAACTGCA AGACAGCGGT 
0241 GTGCGATATT NCCGCCCAGA GGTCTCAAGA TGTCGGCCAC CTTCATTGGC AACTCCACCG 
0301 CCATTCAGGA GCTATTCAAA CGGGTGTCGG AGCAGTTCAC CGCCATGTTC CGAAGGAAGG 
0361 CCTTCTTGCA TTGGTACACC GGCGAGGGAA TGGACGAAAT GGAATTCACA GAGGCCGAGA 
0421 GCAACATGAA CGACTTGGTT TCTGAATATC AGCAGTACCA GGAGGCGACT GCCGATGAGG 
0481 AGGGCGAATT CGATGAAGAC GA 
 in silico PCR Fragment
0001 ACCTCGCGAG GATCGCAACA ATACCGGGCC CTTACCGTTC CGGAGCTGAC CCAGCAGATG 
0061 TTCGATGCCA AGAACATGAT GGCTGCGTGC GATCCGCGAC ATGGTCGCTA -TCTGACCGT 
0121 CGCCGCCATC TTCCGTGGCC GCATGTCCAT GAAGGAGGTG GACGAGCAGA TGCTCAACAT 
0181 TCAGAACAAG AACAGCAGCT TCTTCGTGGA ATGGATCCCG AATAACTGCA AGACAGCGGT 
0241 GTGCGATATT -CCGCCCAGA GGTCTCAAGA TGTCGGCCAC CTTCATTGGC AACTCCACCG 
0301 CCATTCAGGA GCTATTCAAA CGGGTTTCGG AGCAGTTCAC CGCCATGTTC CGAAGGAAGG 
0361 CCTTCTTGCA TTGGTACACC GGCGAGGGAA TGGACGAAAT GGAATTCACA GAGGCCGAGA 
0421 GCAACATGAA CGACTTGGTT TCTGAATATC AGCAGTACCA GGAGGCGACT GCCGATGAGG 
0481 AGGGCGAATT CGATGAAGAC GA 
 Assemble Data

9359R-2.IR_full       1   ACCTCGCGAGGATCGCAACAATACCGGGCCCTTACCGTTCCGGAGCTGACCCAGCAGATG 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9359R-2.in silico     1   ACCTCGCGAGGATCGCAACAATACCGGGCCCTTACCGTTCCGGAGCTGACCCAGCAGATG 60


9359R-2.IR_full       61  TTCGATGCCAAGAACATGATGGCTGCGTGCGATCCGCGACATGGTCGCTANTCTGACCGT 120
                          |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
9359R-2.in silico     61  TTCGATGCCAAGAACATGATGGCTGCGTGCGATCCGCGACATGGTCGCTA-TCTGACCGT 120


9359R-2.IR_full       121 CGCCGCCATCTTCCGTGGCCGCATGTCTATGAAGGAGGTGGACGAGCAGATGCTCAACAT 180
                          ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
9359R-2.in silico     121 CGCCGCCATCTTCCGTGGCCGCATGTCCATGAAGGAGGTGGACGAGCAGATGCTCAACAT 180


9359R-2.IR_full       181 TCAGAACAAGAACAGCAGCTTCTTCGTGGAATGGATCCCAAATAACTGCAAGACAGCGGT 240
                          ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
9359R-2.in silico     181 TCAGAACAAGAACAGCAGCTTCTTCGTGGAATGGATCCCGAATAACTGCAAGACAGCGGT 240


9359R-2.IR_full       241 GTGCGATATTNCCGCCCAGAGGTCTCAAGATGTCGGCCACCTTCATTGGCAACTCCACCG 300
                          |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
9359R-2.in silico     241 GTGCGATATT-CCGCCCAGAGGTCTCAAGATGTCGGCCACCTTCATTGGCAACTCCACCG 300


9359R-2.IR_full       301 CCATTCAGGAGCTATTCAAACGGGTGTCGGAGCAGTTCACCGCCATGTTCCGAAGGAAGG 360
                          ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
9359R-2.in silico     301 CCATTCAGGAGCTATTCAAACGGGTTTCGGAGCAGTTCACCGCCATGTTCCGAAGGAAGG 360


9359R-2.IR_full       361 CCTTCTTGCATTGGTACACCGGCGAGGGAATGGACGAAATGGAATTCACAGAGGCCGAGA 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9359R-2.in silico     361 CCTTCTTGCATTGGTACACCGGCGAGGGAATGGACGAAATGGAATTCACAGAGGCCGAGA 420


9359R-2.IR_full       421 GCAACATGAACGACTTGGTTTCTGAATATCAGCAGTACCAGGAGGCGACTGCCGATGAGG 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9359R-2.in silico     421 GCAACATGAACGACTTGGTTTCTGAATATCAGCAGTACCAGGAGGCGACTGCCGATGAGG 480


9359R-2.IR_full       481 AGGGCGAATTCGATGAAGACGA 502
                          ||||||||||||||||||||||
9359R-2.in silico     481 AGGGCGAATTCGATGAAGACGA 502

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_079566.3  CG9359-RA (betaTub85D), mRNA 
8.92   43  84  109  84  NM_079071.2  CG9277-RB, transcript variant B (betaTub56D), mRNA 
8.92   43  84  109  84  NM_166357.1  CG9277-RC, transcript variant C (betaTub56D), mRNA 
8.92   43  84  109  84  NM_166355.2  CG9277-RD, transcript variant D (betaTub56D), mRNA 
8.92   43  84  109  84  NM_166356.1  CG9277-RA, transcript variant A (betaTub56D), mRNA 
4.56   22  62  82  122  NM_079118.2  CG3401-RA (betaTub60D), mRNA 
2.28   11  76  77  86  NM_143349.1  CG4869-RA (betaTub97EF), mRNA 
0.2   NM_057531.3  CG6863-RA, transcript variant A (tok), mRNA 
0.2   NM_170168.1  CG6863-RB, transcript variant B (tok), mRNA 
0   NM_079452.2  CG7395-RA (NPFR76F), mRNA 
0   NM_080320.2  CG3653-RB, transcript variant B (kirre), mRNA 
0   NM_166958.1  CG3653-RA, transcript variant A (kirre), mRNA 
0   NM_170440.1  CG7816-RA, transcript variant A (CG7816), mRNA 
0   NM_170445.1  CG7816-RG, transcript variant G (CG7816), mRNA 
0   NM_170444.1  CG7816-RF, transcript variant F (CG7816), mRNA 
0   NM_170443.1  CG7816-RE, transcript variant E (CG7816), mRNA 
0   NM_170441.1  CG7816-RC, transcript variant C (CG7816), mRNA 
0   NM_170442.1  CG7816-RD, transcript variant D (CG7816), mRNA 
0   NM_132543.1  CG10362-RA (CG10362), mRNA 
0   NM_057509.3  CG1956-RA (R), mRNA 
0   10  NM_141993.2  CG7518-RB, transcript variant B (CG7518), mRNA 
0   10  NM_169489.1  CG7518-RA, transcript variant A (CG7518), mRNA 
0   NM_078837.2  CG7820-RA (CAH1), mRNA 
0   NM_079739.2  CG10161-RB (eIF-3p66), mRNA 
0   NM_138155.1  CG13405-RA (CG13405), mRNA 
0   NM_165585.1  CG12769-RB, transcript variant B (CG12769), mRNA 
0   NM_136503.2  CG12769-RA, transcript variant A (CG12769), mRNA 
0   NM_057970.3  CG6438-RA (amon), mRNA 
0   NM_167687.1  CG11943-RB, transcript variant B (CG11943), mRNA 
0   NM_134518.2  CG11943-RA, transcript variant A (CG11943), mRNA 

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