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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
9310R-2 |
Symbol |
Hnf4 |
Full Name |
Hepatocyte nuclear factor 4 |
CG No |
CG9310 |
Old CG No |
CG9310 |
Synonyms |
HNF4alpha, dHNF4, HNF-4, HNF4, HNF-4(D), NR2A4, DmHNF4, Hnf-4h, dHNF-4, CG9310, Hnf4, Hepatocyte nuclear factor 4, Hepatocyte nuclear factor 4 homologue, hepatocyte nuclear factor 4 |
Accession No (Link to NCBI) |
NM_057539.3 |
Inserted Chr. |
lll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Nitta Y, Yamazaki D, Sugie A, Hiroi M, Tabata T. DISCO Interacting Protein 2 regulates axonal bifurcation and guidance of Drosophila mushroom body neurons. Dev Biol (2017) 421(2) 233-244
[
PubMed ID = 27908785
]
[
RRC reference
]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Sinenko SA, Hung T, Moroz T, Tran QM, Sidhu S, Cheney MD, Speck NA, Banerjee U. Genetic manipulation of AML1-ETO-induced expansion of hematopoietic precursors in a Drosophila model. Blood (2010) 116(22) 4612-20
[
PubMed ID = 20688956
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgAAGCATCCGCAGGATCTGAGT |
Primer Seq. 3' |
aatctagaggtaccCTCCTCCTGAAGAATCCTTTG |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 AAGCATCCGC AGGATCTGAG TGTCACGGAT GACCAGCAGT TAATGAAGGT GAACAAGGTG
0061 GAGAAGATGG AGCAGGAGTT GCACGACCCC GAATCGGAGA GCCACATAAT GCACGCGGAT
0121 GCCCTGGCCT CTGCCTATCC GGCTGCCTCG CAGCCCCACA GTCCGATCGG CCTCGCCCTC
0181 AGCCCCAATG GCGGTGGGCT GGGACTGAGC AACAGTAGCA ACCAGAGCAG CGAGAACTTT
0241 GCGCTCTGCA ACGGAAACGG AAATGCGGGC AGCGCAGGNA GGCGGAAGTG CCAGCAGTGG
0301 CAGCAACAAC AACAACAGCA TGTTCTCACC CAACAACAAC TTGAGCGGAA GCGGAAGTGG
0361 GACTAACAGC CAGTCAGCAG CAATTGCNAG CAGCAACAAC AACAGCAATC ACCGACGGTC
0421 TGCGCCATTT GTGGAGATCG GGCGACGGGC AAACATTATG GAGCCTCCAG CTGCGACGGC
0481 TGCAAAGGAT TCTTCAGGAG GAG |
in silico PCR Fragment |
0001 AAGCATCCGC AGGATCTGAG TGTCACGGAT GACCAGCAGT TAATGAAGGT GAACAAGGTG
0061 GAGAAGATGG AGCAGGAGTT GCACGACCCC GAATCGGAGA GCCACATAAT GCACGCGGAT
0121 GCCCTGGCCT CTGCCTATCC GGCTGCCTCG CAGCCCCACA GTCCGATCGG CCTCGCCCTC
0181 AGCCCCAATG GCGGTGGGCT GGGACTGAGC AACAGTAGCA ACCAGAGCAG CGAGAACTTT
0241 GCGCTCTGCA ACGGAAACGG AAATGCGGGC AGCGCAGG-A GGCGGAAGTG CCAGCAGTGG
0301 CAGCAACAAC AACAACAGCA TGTTCTCACC CAACAACAAC TTGAGCGGAA GCGGAAGTGG
0361 GACTAACAG- CAGTCAGCAG CAATTGC-AG CAGCAACAAC AACAGCAATC ACCGACGGTC
0421 TGCGCCATTT GTGGAGATCG GGCGACGGGC AAACATTATG GAGCCTCCAG CTGCGACGGC
0481 TGCAAAGGAT TCTTCAGGAG GAG |
Assemble Data |
9310R-2.IR_full 1 AAGCATCCGCAGGATCTGAGTGTCACGGATGACCAGCAGTTAATGAAGGTGAACAAGGTG 60
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9310R-2.in silico 1 AAGCATCCGCAGGATCTGAGTGTCACGGATGACCAGCAGTTAATGAAGGTGAACAAGGTG 60
9310R-2.IR_full 61 GAGAAGATGGAGCAGGAGTTGCACGACCCCGAATCGGAGAGCCACATAATGCACGCGGAT 120
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9310R-2.in silico 61 GAGAAGATGGAGCAGGAGTTGCACGACCCCGAATCGGAGAGCCACATAATGCACGCGGAT 120
9310R-2.IR_full 121 GCCCTGGCCTCTGCCTATCCGGCTGCCTCGCAGCCCCACAGTCCGATCGGCCTCGCCCTC 180
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9310R-2.in silico 121 GCCCTGGCCTCTGCCTATCCGGCTGCCTCGCAGCCCCACAGTCCGATCGGCCTCGCCCTC 180
9310R-2.IR_full 181 AGCCCCAATGGCGGTGGGCTGGGACTGAGCAACAGTAGCAACCAGAGCAGCGAGAACTTT 240
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9310R-2.in silico 181 AGCCCCAATGGCGGTGGGCTGGGACTGAGCAACAGTAGCAACCAGAGCAGCGAGAACTTT 240
9310R-2.IR_full 241 GCGCTCTGCAACGGAAACGGAAATGCGGGCAGCGCAGGNAGGCGGAAGTGCCAGCAGTGG 300
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9310R-2.in silico 241 GCGCTCTGCAACGGAAACGGAAATGCGGGCAGCGCAGG-AGGCGGAAGTGCCAGCAGTGG 300
9310R-2.IR_full 301 CAGCAACAACAACAACAGCATGTTCTCACCCAACAACAACTTGAGCGGAAGCGGAAGTGG 360
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9310R-2.in silico 301 CAGCAACAACAACAACAGCATGTTCTCACCCAACAACAACTTGAGCGGAAGCGGAAGTGG 360
9310R-2.IR_full 361 GACTAACAGCCAGTCAGCAGCAATTGCNAGCAGCAACAACAACAGCAATCACCGACGGTC 420
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9310R-2.in silico 361 GACTAACAG-CAGTCAGCAGCAATTGC-AGCAGCAACAACAACAGCAATCACCGACGGTC 420
9310R-2.IR_full 421 TGCGCCATTTGTGGAGATCGGGCGACGGGCAAACATTATGGAGCCTCCAGCTGCGACGGC 480
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9310R-2.in silico 421 TGCGCCATTTGTGGAGATCGGGCGACGGGCAAACATTATGGAGCCTCCAGCTGCGACGGC 480
9310R-2.IR_full 481 TGCAAAGGATTCTTCAGGAGGAG 503
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9310R-2.in silico 481 TGCAAAGGATTCTTCAGGAGGAG 503
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
6 |
11 |
46 |
NM_057539.3 |
CG9310-RA, transcript variant A (Hnf4), mRNA |
81.53 |
393 |
7 |
11 |
32 |
NM_164833.1 |
CG9310-RB, transcript variant B (Hnf4), mRNA |
81.32 |
392 |
7 |
11 |
32 |
NM_164834.1 |
CG9310-RC, transcript variant C (Hnf4), mRNA |
2.48 |
12 |
80 |
267 |
732 |
NM_168571.2 |
CG32133-RA (CG32133), mRNA |
1.65 |
8 |
61 |
318 |
1156 |
NM_080536.2 |
CG4013-RA, transcript variant A (Smr), mRNA |
1.65 |
8 |
61 |
318 |
1156 |
NM_167334.1 |
CG4013-RB, transcript variant B (Smr), mRNA |
1.65 |
8 |
61 |
318 |
1156 |
NM_167335.1 |
CG4013-RC, transcript variant C (Smr), mRNA |
1.65 |
8 |
31 |
145 |
331 |
NM_078592.2 |
CG11172-RA (NFAT), mRNA |
1.45 |
7 |
54 |
172 |
468 |
NM_135077.2 |
CG14023-RA (CG14023), mRNA |
1.45 |
7 |
20 |
88 |
240 |
NM_142597.2 |
CG12254-RA (MED25), mRNA |
1.45 |
7 |
17 |
100 |
279 |
NM_078717.2 |
CG3696-RA, transcript variant A (kis), mRNA |
1.45 |
7 |
17 |
49 |
154 |
NM_169292.2 |
CG9381-RC, transcript variant C (mura), mRNA |
1.45 |
7 |
17 |
49 |
139 |
NM_169291.1 |
CG9381-RB, transcript variant B (mura), mRNA |
1.45 |
7 |
17 |
49 |
139 |
NM_141645.2 |
CG9381-RA, transcript variant A (mura), mRNA |
1.45 |
7 |
14 |
67 |
179 |
NM_001043134.1 |
CG7368-RB (CG7368), mRNA |
1.24 |
6 |
36 |
103 |
264 |
NM_137690.2 |
CG10543-RA, transcript variant A (CG10543), mRNA |
1.24 |
6 |
36 |
99 |
241 |
NM_166416.1 |
CG10543-RB, transcript variant B (CG10543), mRNA |
1.24 |
6 |
36 |
99 |
240 |
NM_176241.1 |
CG10543-RC, transcript variant C (CG10543), mRNA |
1.24 |
6 |
35 |
116 |
277 |
NM_176557.1 |
CG33106-RB, transcript variant B (mask), mRNA |
1.24 |
6 |
35 |
116 |
277 |
NM_176556.1 |
CG33106-RA, transcript variant A (mask), mRNA |
1.24 |
6 |
30 |
93 |
270 |
NM_206286.1 |
CG10107-RC, transcript variant C (CG10107), mRNA |
1.24 |
6 |
30 |
93 |
270 |
NM_139799.3 |
CG10107-RA, transcript variant A (CG10107), mRNA |
1.24 |
6 |
28 |
137 |
362 |
NM_079903.2 |
CG15319-RB (nej), mRNA |
1.24 |
6 |
27 |
124 |
348 |
NM_078797.2 |
CG13109-RA (tai), mRNA |
1.24 |
6 |
19 |
97 |
265 |
NM_167000.1 |
CG32778-RA (CG32778), mRNA |
1.24 |
6 |
17 |
58 |
229 |
NM_137212.2 |
CG30089-RA (CG30089), mRNA |
1.24 |
6 |
16 |
59 |
168 |
NM_206456.1 |
CG32466-RB, transcript variant B (rn), mRNA |
1.24 |
6 |
16 |
48 |
130 |
NM_141458.2 |
CG32466-RA, transcript variant A (rn), mRNA |
1.24 |
6 |
16 |
43 |
104 |
NM_079871.2 |
CG1775-RA, transcript variant A (Med), mRNA |
1.24 |
6 |
16 |
38 |
90 |
NM_170559.1 |
CG1775-RB, transcript variant B (Med), mRNA |
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