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Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
9262R-3 |
| Symbol |
Shal |
Full Name |
Shaker cognate l |
| CG No |
CG9262 |
Old CG No |
CG9262 |
| Synonyms |
shal, dShal, Shl, Sh-l, CG9262, Shal, Shaker cognate l, Shaker-like, Shaker cognate 1 |
| Accession No (Link to NCBI) |
NM_079435.2 |
| Inserted Chr. |
lll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
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Reference
[Please submit your publication]
|
Fernandez-Chiappe F, Frenkel L, Colque CC, Ricciuti A, Hahm B, Cerredo K, Muraro NI, Ceriani MF.
High-Frequency Neuronal Bursting is Essential for Circadian and Sleep Behaviors in Drosophila.
J Neurosci (2021) 41(4) 689-710
[
PubMed ID = 33262246
]
[
RRC reference
]
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| Comment |
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| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgCCCAAGGATCGCCGCAAAACG |
| Primer Seq. 3' |
aatctagaggtaccGAGACGGCGATGAAGAAACCC |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 CCCAAGGATC GCCGCAAAAC GGACGACGAG AAGCTCCTGA TCAACGTCTC CGGGCGGCGT
0061 TTCGAGACGT GGCGGAATAC TTTGGAGAAG TATCCGGACA CCCTTTTAGG TTCCAATGAA
0121 AGGGAGTTCT TCTACGACGA GGACTGCAAA GAATACTTCT TCGATCGGGA CCCGGACATC
0181 TTCCGGCACA TACTGAACTA CTACCGGACG GGCAAGCTGC ACTACCCGAA GCACGAATGC
0241 CTCACCAGCT ACGACGAGGA GCTGGCCTTC TTTGGAATAA TGCCGGATGT CATTGGCGAT
0301 TGCTGCTACG AGGACTACCG GGACCGGAAG CGGGAGAACg CGGAGCGGCT GATGGACGAC
0361 AAGCTGTCGG AGAACGGGGA TCAGAATCTG CAGCAGCTGA CCAACATGCG CCAGAAGATG
0421 TGGCGGGCCT TCGAGAATCC GCACACGTCG ACGAGCGCCC TGGTGTTCTA CTATGTTACG
0481 GGTTTCTTCA TCGCCGTCTC |
| in silico PCR Fragment |
0001 CCCAAGGATC GCCGCAAAAC GGACGACGAG AAGCTCCTGA TCAACGTCTC CGGGCGGCGT
0061 TTCGAGACGT GGCGGAATAC TTTGGAGAAG TATCCGGACA CCCTTTTAGG TTCCAATGAA
0121 AGGGAGTTCT TCTACGACGA GGACTGCAAA GAATACTTCT TCGATCGGGA CCCGGACATC
0181 TTCCGGCACA TACTGAACTA CTACCGGACG GGCAAGCTGC ACTACCCGAA GCACGAATGC
0241 CTCACCAGCT ACGACGAGGA GCTGGCCTTC TTTGGAATAA TGCCGGATGT CATTGGCGAT
0301 TGCTGCTACG AGGACTACCG GGACCGGAAG CGGGAGAACG CGGAGCGGCT GATGGACGAC
0361 AAGCTGTCGG AGAACGGGGA TCAGAATCTG CAGCAGCTGA CCAACATGCG CCAGAAGATG
0421 TGGCGGGCCT TCGAGAATCC GCACACGTCG ACGAGCGCCC TGGTGTTCTA CTATGTTACG
0481 GGTTTCTTCA TCGCCGTCTC |
| Assemble Data |
9262R-3.IR_full 1 CCCAAGGATCGCCGCAAAACGGACGACGAGAAGCTCCTGATCAACGTCTCCGGGCGGCGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9262R-3.in silico 1 CCCAAGGATCGCCGCAAAACGGACGACGAGAAGCTCCTGATCAACGTCTCCGGGCGGCGT 60
9262R-3.IR_full 61 TTCGAGACGTGGCGGAATACTTTGGAGAAGTATCCGGACACCCTTTTAGGTTCCAATGAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9262R-3.in silico 61 TTCGAGACGTGGCGGAATACTTTGGAGAAGTATCCGGACACCCTTTTAGGTTCCAATGAA 120
9262R-3.IR_full 121 AGGGAGTTCTTCTACGACGAGGACTGCAAAGAATACTTCTTCGATCGGGACCCGGACATC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9262R-3.in silico 121 AGGGAGTTCTTCTACGACGAGGACTGCAAAGAATACTTCTTCGATCGGGACCCGGACATC 180
9262R-3.IR_full 181 TTCCGGCACATACTGAACTACTACCGGACGGGCAAGCTGCACTACCCGAAGCACGAATGC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9262R-3.in silico 181 TTCCGGCACATACTGAACTACTACCGGACGGGCAAGCTGCACTACCCGAAGCACGAATGC 240
9262R-3.IR_full 241 CTCACCAGCTACGACGAGGAGCTGGCCTTCTTTGGAATAATGCCGGATGTCATTGGCGAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9262R-3.in silico 241 CTCACCAGCTACGACGAGGAGCTGGCCTTCTTTGGAATAATGCCGGATGTCATTGGCGAT 300
9262R-3.IR_full 301 TGCTGCTACGAGGACTACCGGGACCGGAAGCGGGAGAACGCGGAGCGGCTGATGGACGAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9262R-3.in silico 301 TGCTGCTACGAGGACTACCGGGACCGGAAGCGGGAGAACGCGGAGCGGCTGATGGACGAC 360
9262R-3.IR_full 361 AAGCTGTCGGAGAACGGGGATCAGAATCTGCAGCAGCTGACCAACATGCGCCAGAAGATG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9262R-3.in silico 361 AAGCTGTCGGAGAACGGGGATCAGAATCTGCAGCAGCTGACCAACATGCGCCAGAAGATG 420
9262R-3.IR_full 421 TGGCGGGCCTTCGAGAATCCGCACACGTCGACGAGCGCCCTGGTGTTCTACTATGTTACG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9262R-3.in silico 421 TGGCGGGCCTTCGAGAATCCGCACACGTCGACGAGCGCCCTGGTGTTCTACTATGTTACG 480
9262R-3.IR_full 481 GGTTTCTTCATCGCCGTCTC 500
||||||||||||||||||||
9262R-3.in silico 481 GGTTTCTTCATCGCCGTCTC 500
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
2 |
3 |
NM_079435.2 |
CG9262-RA (Shal), mRNA |
| 0 |
0 |
3 |
2 |
3 |
NM_079444.2 |
CG8727-RA (cyc), mRNA |
| 0 |
0 |
2 |
6 |
12 |
NM_132125.1 |
CG4536-RA (CG4536), mRNA |
| 0 |
0 |
2 |
3 |
6 |
NM_079114.1 |
CG11290-RA (enok), mRNA |
| 0 |
0 |
1 |
5 |
5 |
NM_137987.2 |
CG5539-RA (CG5539), mRNA |
| 0 |
0 |
1 |
4 |
5 |
NM_168254.1 |
CG7915-RB, transcript variant B (Ect4), mRNA |
| 0 |
0 |
1 |
4 |
5 |
NM_001043129.1 |
CG7915-RC, transcript variant C (Ect4), mRNA |
| 0 |
0 |
1 |
4 |
2 |
NM_140026.2 |
CG5133-RA (Doc1), mRNA |
| 0 |
0 |
1 |
4 |
2 |
NM_137017.1 |
CG17042-RA (CG17042), mRNA |
| 0 |
0 |
1 |
3 |
13 |
NM_165535.1 |
CG2146-RC, transcript variant C (didum), mRNA |
| 0 |
0 |
1 |
3 |
13 |
NM_057838.3 |
CG2146-RA, transcript variant A (didum), mRNA |
| 0 |
0 |
1 |
3 |
13 |
NM_165536.1 |
CG2146-RB, transcript variant B (didum), mRNA |
| 0 |
0 |
1 |
3 |
4 |
NM_167047.1 |
CG3125-RB, transcript variant B (l(1)G0060), mRNA |
| 0 |
0 |
1 |
3 |
4 |
NM_132025.2 |
CG3125-RA, transcript variant A (l(1)G0060), mRNA |
| 0 |
0 |
1 |
2 |
12 |
NM_079018.2 |
CG10119-RA (LamC), mRNA |
| 0 |
0 |
1 |
2 |
5 |
NM_137299.1 |
CG5065-RA (CG5065), mRNA |
| 0 |
0 |
1 |
2 |
5 |
NM_166671.1 |
CG30164-RA (CG30164), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_170013.2 |
CG31160-RA (CG31160), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_136242.2 |
CG12050-RA (CG12050), mRNA |
| 0 |
0 |
0 |
8 |
12 |
NM_001043010.1 |
CG9432-RD, transcript variant D (l(2)01289), mRNA |
| 0 |
0 |
0 |
8 |
9 |
NM_165485.1 |
CG9432-RB, transcript variant B (l(2)01289), mRNA |
| 0 |
0 |
0 |
6 |
5 |
NM_141734.2 |
CG11870-RA, transcript variant A (CG11870), mRNA |
| 0 |
0 |
0 |
6 |
5 |
NM_206470.1 |
CG11870-RC, transcript variant C (CG11870), mRNA |
| 0 |
0 |
0 |
6 |
5 |
NM_206469.1 |
CG11870-RD, transcript variant D (CG11870), mRNA |
| 0 |
0 |
0 |
6 |
5 |
NM_143769.3 |
CG9432-RA, transcript variant A (l(2)01289), mRNA |
| 0 |
0 |
0 |
6 |
5 |
NM_169337.2 |
CG11870-RB, transcript variant B (CG11870), mRNA |
| 0 |
0 |
0 |
5 |
11 |
NM_078654.2 |
CG9623-RB, transcript variant B (if), mRNA |
| 0 |
0 |
0 |
4 |
14 |
NM_001032051.1 |
CG33715-RD, transcript variant D (Msp-300), mRNA |
| 0 |
0 |
0 |
4 |
9 |
NM_080328.2 |
CG15573-RB (Femcoat), mRNA |
| 0 |
0 |
0 |
4 |
8 |
NM_001042852.1 |
CG12500-RB, transcript variant B (stnA), mRNA |
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