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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 8864R-4 
 Symbol Cyp28a5  Full Name Cyp28a5 
 CG No CG8864  Old CG No CG8864 
 Synonyms 28a5, cyp28a5, gh10483, BG:DS00180.11, DS00180.11, BEST:GH10483, CG8864, Cyp28a5 
 Accession No (Link to NCBI) NM_135850.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCGATGCTGTGGGCATTTTTGG 
 Primer Seq. 3'
aatctagaggtaccGCGATGGGAAGGAACTAGTCA 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CGATGCTGTG GGCATTTTTG GCAGCCgNTC TCCACAGCTG CTGGTGATCA ATCCCGCGTT 
0061 GGCGcNTCGA GTCTTTGTGT CCAACTTTAA GAACTTCCAC GACAATGAGA TCGCCAAGAA 
0121 TATTGACGAG AAAACCGATT TCATTTTCGC CAACAATCCG TTCTCGTTAA CTGGCGAAAA 
0181 GTGGAAAACT CGAAGGGCGG ACGTAACGCC TGGTCTTACG ATGGGACGGA TAAAGACAGT 
0241 CTATCCGGTG ACAAACAAGG TGTGCCAAAA GTTGACCGAG TGGGTGGAGA AGCAATTGCG 
0301 TCTGGGTTCT AAAGACGGCA TCGATGCCAA GCACATGAGT CTCTGCTTCA CAACAGAGAT 
0361 GGTCACCGAT TGTGTTTTGG GTCTGGGCGC TGAAAGCTTT TCGGATAAGC CCACACCCAT 
0421 AATGTCGAAA ATCAATGATC TCTTCAACCA GCCCTGGACC TTTGTGCTGT TCTTTATACT 
0481 GACTAGTTCC TTCCCAtCGN  
 in silico PCR Fragment
0001 CGATGCTGTG GGCATTTTTG GCAGCCGCTC TCCACAGCTG CTGGTGATCA ATCCCGCGTT 
0061 GGCGCGTCGA GTCTTTGTGT CCAACTTTAA GAACTTCCAC GACAATGAGA TCGCCAAGAA 
0121 TATTGACGAG AAAACCGATT TCATTTTCGC CAACAATCCG TTCTCGTTAA CTGGCGAAAA 
0181 GTGGAAAACT CGAAGGGCGG ACGTAACGCC TGGTCTTACG ATGGGACGGA TAAAGACAGT 
0241 CTATCCGGTG ACAAACAAGG TGTGCCAAAA GTTGACCGAG TGGGTGGAGA AGCAATTGCG 
0301 TCTGGGTTCT AAAGACGGCA TCGATGCCAA GCACATGAGT CTCTGCTTCA CAACAGAGAT 
0361 GGTCACCGAT TGTGTTTTGG GTCTGGGCGC TGAAAGCTTT TCGGATAAGC CCACACCCAT 
0421 AATGTCGAAA ATCAATGATC TCTTCAACCA GCCCTGGACC TTTGTGCTGT TCTTTATACT 
0481 GACTAGTTCC TTCCCATCGC  
 Assemble Data

8864R-4.IR_full       1   CGATGCTGTGGGCATTTTTGGCAGCCGNTCTCCACAGCTGCTGGTGATCAATCCCGCGTT 60
                          ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
8864R-4.in silico     1   CGATGCTGTGGGCATTTTTGGCAGCCGCTCTCCACAGCTGCTGGTGATCAATCCCGCGTT 60


8864R-4.IR_full       61  GGCGCNTCGAGTCTTTGTGTCCAACTTTAAGAACTTCCACGACAATGAGATCGCCAAGAA 120
                          ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
8864R-4.in silico     61  GGCGCGTCGAGTCTTTGTGTCCAACTTTAAGAACTTCCACGACAATGAGATCGCCAAGAA 120


8864R-4.IR_full       121 TATTGACGAGAAAACCGATTTCATTTTCGCCAACAATCCGTTCTCGTTAACTGGCGAAAA 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8864R-4.in silico     121 TATTGACGAGAAAACCGATTTCATTTTCGCCAACAATCCGTTCTCGTTAACTGGCGAAAA 180


8864R-4.IR_full       181 GTGGAAAACTCGAAGGGCGGACGTAACGCCTGGTCTTACGATGGGACGGATAAAGACAGT 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8864R-4.in silico     181 GTGGAAAACTCGAAGGGCGGACGTAACGCCTGGTCTTACGATGGGACGGATAAAGACAGT 240


8864R-4.IR_full       241 CTATCCGGTGACAAACAAGGTGTGCCAAAAGTTGACCGAGTGGGTGGAGAAGCAATTGCG 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8864R-4.in silico     241 CTATCCGGTGACAAACAAGGTGTGCCAAAAGTTGACCGAGTGGGTGGAGAAGCAATTGCG 300


8864R-4.IR_full       301 TCTGGGTTCTAAAGACGGCATCGATGCCAAGCACATGAGTCTCTGCTTCACAACAGAGAT 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8864R-4.in silico     301 TCTGGGTTCTAAAGACGGCATCGATGCCAAGCACATGAGTCTCTGCTTCACAACAGAGAT 360


8864R-4.IR_full       361 GGTCACCGATTGTGTTTTGGGTCTGGGCGCTGAAAGCTTTTCGGATAAGCCCACACCCAT 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8864R-4.in silico     361 GGTCACCGATTGTGTTTTGGGTCTGGGCGCTGAAAGCTTTTCGGATAAGCCCACACCCAT 420


8864R-4.IR_full       421 AATGTCGAAAATCAATGATCTCTTCAACCAGCCCTGGACCTTTGTGCTGTTCTTTATACT 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8864R-4.in silico     421 AATGTCGAAAATCAATGATCTCTTCAACCAGCCCTGGACCTTTGTGCTGTTCTTTATACT 480


8864R-4.IR_full       481 GACTAGTTCCTTCCCATCGN 500
                          ||||||||||||||||||| 
8864R-4.in silico     481 GACTAGTTCCTTCCCATCGC 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_135850.2  CG8864-RA (Cyp28a5), mRNA 
0   13  NM_135068.2  CG10833-RA (Cyp28d1), mRNA 
0   NM_140176.1  CG6279-RA (CG6279), mRNA 
0   NM_079615.2  CG7756-RA (Hsc70-2), mRNA 
0   NM_057560.3  CG17369-RB, transcript variant B (Vha55), mRNA 
0   NM_169475.1  CG17369-RA, transcript variant A (Vha55), mRNA 
0   NM_136335.2  CG1298-RA (CG1298), mRNA 
0   NM_141573.2  CG8236-RA (CG8236), mRNA 
0   12  NM_135067.1  CG6081-RA (Cyp28d2), mRNA 
0   NM_137162.1  CG10253-RA (CG10253), mRNA 
0   NM_135036.2  CG8873-RA, transcript variant A (CG8873), mRNA 
0   NM_001042867.1  CG8873-RB, transcript variant B (CG8873), mRNA 
0   NM_141756.3  CG31272-RA (CG31272), mRNA 
0   NM_140491.2  CG13458-RA (CG13458), mRNA 
0   NM_137595.1  CG11025-RA, transcript variant A (isopeptidase-T-3), mRNA 
0   NM_166373.2  CG11025-RB, transcript variant B (isopeptidase-T-3), mRNA 
0   NM_143136.2  CG11910-RA (CG11910), mRNA 
0   NM_169222.2  CG31462-RA (CG31462), mRNA 
0   NM_079071.2  CG9277-RB, transcript variant B (betaTub56D), mRNA 
0   NM_166356.1  CG9277-RA, transcript variant A (betaTub56D), mRNA 
0   NM_206266.1  CG12008-RB, transcript variant B (kst), mRNA 
0   NM_206265.1  CG12008-RC, transcript variant C (kst), mRNA 
0   NM_079176.1  CG12008-RA, transcript variant A (kst), mRNA 
0   NM_138254.2  CG9153-RB, transcript variant B (CG9153), mRNA 
0   NM_167868.1  CG9153-RA, transcript variant A (CG9153), mRNA 
0   NM_142218.1  CG18522-RA (CG18522), mRNA 
0   NM_166019.1  CG18076-RH, transcript variant H (shot), mRNA 
0   NM_139981.2  CG6831-RA (rhea), mRNA 
0   NM_137569.3  CG11961-RB, transcript variant B (CG11961), mRNA 
0   NM_166342.1  CG11961-RA, transcript variant A (CG11961), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
 
DC
 
DM
 
VM
 
VB
 
Caspase-3 signal
N
 
DB
 
DC
 
DM
 
VM
 
VB
 
Dcompartment   Penetrance
     

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