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Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
8676R-2 |
| Symbol |
Hr39 |
Full Name |
Hormone receptor-like in 39 |
| CG No |
CG8676 |
Old CG No |
CG8676 |
| Synonyms |
DHR39, CG8676, i70, EP(2)2490, DHR30, FTZ-F1B, DHR39/Ftz-F1beta, NR5B1, betaFTZ-F1, ftz-F1, unnamed, dFTZ-F1beta, ftz-F1beta, ftz-f1beta, FTZ-F1, FTZ-F1beta, Hr39 |
| Accession No (Link to NCBI) |
NM_057584.4 |
| Inserted Chr. |
lll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
| Map Viewer |
|
Reference
[Please submit your publication]
|
Cho Y, Lai CM, Lin KY, Hsu HJ.
A Targeted RNAi Screen Reveals Drosophila Female-Sterile Genes That Control the Size of Germline Stem Cell Niche During Development.
G3 (Bethesda) (2018) 8(7) 2345-2354
[
PubMed ID = 29764959
]
[
RRC reference
]
Nitta Y, Yamazaki D, Sugie A, Hiroi M, Tabata T.
DISCO Interacting Protein 2 regulates axonal bifurcation and guidance of Drosophila mushroom body neurons.
Dev Biol (2017) 421(2) 233-244
[
PubMed ID = 27908785
]
[
RRC reference
]
|
| Comment |
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgATGTCCAGCATCAAAGCGGAG |
| Primer Seq. 3' |
aatctagaggtaccATCGGTTGTAGTGCGCAGACG |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 ATGTCCAGCA TCAAAGCGCG AGCAGCAAAG CGGTCCTCTT GGAGGAAGTA GCGGCTATCA
0061 AGTACCGGTC AACATGTGCA CCACCACAGT CGCGAATACG ACGACCACTT TGGGAAGCTC
0121 CGCCGGGGGA GCCACTGGCT CCCGGCANCA ACGTCTCCGT GACAAACATC AAGTGCGAAC
0181 TAGACGAACT ACCGTCACCG AACGGCAACA TGGTGCCGGT TATCGCAAAC TACGTTCACG
0241 GGTAGCTTGC GCATTCCACT CAGTGGACAT TCAAATCATA GGGAGTCCGA TTCGGAGGAG
0301 GAGCTGGCAA GTATTGAGAA CTTGAAGGTT CGGCGAAGGA CGGCGGCGGA CAAAAATGGT
0361 CCTCGTCCAA TGTCCTGGGA GGGCGAGCTG AGCGATACTG AGGTCAACGG GGGCGAAGAG
0421 CTGATGGAAA TGGAGCCAAC AATTAAGAGT GAGGTGGTCC CTGCTGTTGC ACCCCCACAA
0481 CCCGTCTGCG CACTACAACC GAT |
| in silico PCR Fragment |
0001 ATGTCCAGCA TCAAAGCG-G AGCAGCAAAG CGGTCCTCTT GGAGGAAGTA GCGGCTATCA
0061 AGTACCGGTC AACATGTGCA CCACCACAGT CGCGAATACG ACGACCACTT TGGGAAGCTC
0121 CGCCGGGGGA GCCACTGGCT CCCGGCA-CA ACGTCTCCGT GACAAACATC AAGTGCGAAC
0181 TAGACGAACT ACCGTCACCG AACGGCAACA TGGTGCCGGT TATCGCAAAC TACGTTCAC-
0241 GGTAGCTTGC GCATTCCACT CAGTGGACAT TCAAATCATA GGGAGTCCGA TTCGGAGGAG
0301 GAGCTGGCAA GTATTGAGAA CTTGAAGGTT CGGCGAAGGA CGGCGGCGGA CAAAAATGGT
0361 CCTCGTCCAA TGTCCTGGGA GGGCGAGCTG AGCGATACTG AGGTCAACGG GGGCGAAGAG
0421 CTGATGGAAA TGGAGCCAAC AATTAAGAGT GAGGTGGTCC CTGCTGTTGC ACCCCCACAA
0481 CCCGTCTGCG CACTACAACC GAT |
| Assemble Data |
8676R-2.IR_full 1 ATGTCCAGCATCAAAGCGCGAGCAGCAAAGCGGTCCTCTTGGAGGAAGTAGCGGCTATCA 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
8676R-2.in silico 1 ATGTCCAGCATCAAAGCG-GAGCAGCAAAGCGGTCCTCTTGGAGGAAGTAGCGGCTATCA 60
8676R-2.IR_full 61 AGTACCGGTCAACATGTGCACCACCACAGTCGCGAATACGACGACCACTTTGGGAAGCTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8676R-2.in silico 61 AGTACCGGTCAACATGTGCACCACCACAGTCGCGAATACGACGACCACTTTGGGAAGCTC 120
8676R-2.IR_full 121 CGCCGGGGGAGCCACTGGCTCCCGGCANCAACGTCTCCGTGACAAACATCAAGTGCGAAC 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
8676R-2.in silico 121 CGCCGGGGGAGCCACTGGCTCCCGGCA-CAACGTCTCCGTGACAAACATCAAGTGCGAAC 180
8676R-2.IR_full 181 TAGACGAACTACCGTCACCGAACGGCAACATGGTGCCGGTTATCGCAAACTACGTTCACG 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8676R-2.in silico 181 TAGACGAACTACCGTCACCGAACGGCAACATGGTGCCGGTTATCGCAAACTACGTTCAC- 240
8676R-2.IR_full 241 GGTAGCTTGCGCATTCCACTCAGTGGACATTCAAATCATAGGGAGTCCGATTCGGAGGAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8676R-2.in silico 241 GGTAGCTTGCGCATTCCACTCAGTGGACATTCAAATCATAGGGAGTCCGATTCGGAGGAG 300
8676R-2.IR_full 301 GAGCTGGCAAGTATTGAGAACTTGAAGGTTCGGCGAAGGACGGCGGCGGACAAAAATGGT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8676R-2.in silico 301 GAGCTGGCAAGTATTGAGAACTTGAAGGTTCGGCGAAGGACGGCGGCGGACAAAAATGGT 360
8676R-2.IR_full 361 CCTCGTCCAATGTCCTGGGAGGGCGAGCTGAGCGATACTGAGGTCAACGGGGGCGAAGAG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8676R-2.in silico 361 CCTCGTCCAATGTCCTGGGAGGGCGAGCTGAGCGATACTGAGGTCAACGGGGGCGAAGAG 420
8676R-2.IR_full 421 CTGATGGAAATGGAGCCAACAATTAAGAGTGAGGTGGTCCCTGCTGTTGCACCCCCACAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8676R-2.in silico 421 CTGATGGAAATGGAGCCAACAATTAAGAGTGAGGTGGTCCCTGCTGTTGCACCCCCACAA 480
8676R-2.IR_full 481 CCCGTCTGCGCACTACAACCGAT 503
|||||||||||||||||||||||
8676R-2.in silico 481 CCCGTCTGCGCACTACAACCGAT 503
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
5 |
NM_134296.2 |
CG8676-RB, transcript variant B (Hr39), mRNA |
| 100 |
482 |
0 |
0 |
5 |
NM_165364.1 |
CG8676-RD, transcript variant D (Hr39), mRNA |
| 100 |
482 |
0 |
0 |
5 |
NM_057584.4 |
CG8676-RA, transcript variant A (Hr39), mRNA |
| 100 |
482 |
0 |
0 |
5 |
NM_057585.2 |
CG8676-RC, transcript variant C (Hr39), mRNA |
| 0 |
0 |
2 |
3 |
4 |
NM_057958.3 |
CG3584-RA (qkr58E-3), mRNA |
| 0 |
0 |
2 |
3 |
3 |
NM_166110.1 |
CG30091-RA (CG30091), mRNA |
| 0 |
0 |
1 |
6 |
5 |
NM_132351.1 |
CG1343-RA, transcript variant A (Sp1), mRNA |
| 0 |
0 |
1 |
6 |
3 |
NM_134822.1 |
CG17237-RA (CG17237), mRNA |
| 0 |
0 |
1 |
5 |
5 |
NM_142377.1 |
CG18139-RA (CG18139), mRNA |
| 0 |
0 |
1 |
2 |
6 |
NM_206091.1 |
CG7734-RD, transcript variant D (shn), mRNA |
| 0 |
0 |
1 |
2 |
6 |
NM_057375.3 |
CG7734-RA, transcript variant A (shn), mRNA |
| 0 |
0 |
1 |
2 |
6 |
NM_134279.2 |
CG7734-RB, transcript variant B (shn), mRNA |
| 0 |
0 |
1 |
2 |
6 |
NM_057376.2 |
CG7734-RC, transcript variant C (shn), mRNA |
| 0 |
0 |
1 |
2 |
6 |
NM_167908.1 |
CG7961-RB, transcript variant B (alphaCop), mRNA |
| 0 |
0 |
1 |
2 |
6 |
NM_058047.3 |
CG7961-RA, transcript variant A (alphaCop), mRNA |
| 0 |
0 |
1 |
2 |
5 |
NM_058041.2 |
CG12467-RA (CG12467), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_138216.1 |
CG13886-RA (CG13886), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_165584.1 |
CG18455-RB, transcript variant B (Optix), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_079956.2 |
CG18455-RA, transcript variant A (Optix), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_131991.2 |
CG3252-RA (CG3252), mRNA |
| 0 |
0 |
0 |
7 |
3 |
NM_167192.1 |
CG32700-RB, transcript variant B (CG32700), mRNA |
| 0 |
0 |
0 |
7 |
3 |
NM_167191.1 |
CG32700-RA, transcript variant A (CG32700), mRNA |
| 0 |
0 |
0 |
6 |
7 |
NM_143996.1 |
CG13643-RA (CG13643), mRNA |
| 0 |
0 |
0 |
5 |
13 |
NM_164374.1 |
CG18497-RA, transcript variant A (spen), mRNA |
| 0 |
0 |
0 |
5 |
13 |
NM_164375.1 |
CG18497-RC, transcript variant C (spen), mRNA |
| 0 |
0 |
0 |
5 |
13 |
NM_079979.2 |
CG18497-RB, transcript variant B (spen), mRNA |
| 0 |
0 |
0 |
5 |
5 |
NM_078713.2 |
CG17596-RA (S6kII), mRNA |
| 0 |
0 |
0 |
5 |
3 |
NM_078705.2 |
CG1685-RA (pen), mRNA |
| 0 |
0 |
0 |
5 |
3 |
NM_142739.2 |
CG6678-RA (CG6678), mRNA |
| 0 |
0 |
0 |
5 |
2 |
NM_078589.2 |
CG1903-RB, transcript variant B (sno), mRNA |
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