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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 8553R-1 
 Symbol SelD  Full Name selenide,water dikinase 
 CG No CG8553  Old CG No CG8553 
 Synonyms 142926_at, selD, CG8553, SPS1, Dm SelD, ptuf1, ptuf, Dm-SelD, SeS, ptf1, l(2)k12303, anon-WO0172774.146, anon-WO0172774.145, SelD 
 Accession No (Link to NCBI) NM_166045.1 
 Inserted Chr. ll 
 Insertional Mutation  lethal 
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTGAACTCGGCCCATTTGGAGC 
 Primer Seq. 3'
aatctagaggtaccAGCGGAGTCCTTAAAGCCTCG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 TGAACTCGGC CCATTTGGAG CTCCATGGTG GTGGCGACGC CGAGTTGCGT CGTCCATTCG 
0061 ATCCCACGGC CCATGATTTG GATGCATCCT TCCGCCTTAC ACGCTTCGCA GATCTAAAGG 
0121 GGCGCGGCNT GCAAAGTGCC GCAGGATGTG CTCTCCAAGC TGGTGTCCGC CCTGCAGCAG 
0181 GACTACTCTG CCCAGGACCA GGAACCGCAG TTTCTCAACG TGGCCATTCC CCGCATCGGT 
0241 ATTGGCCTGG ACTGCTCCGT CATTCCGCTG CGACACGGCG GACTCTGCCT GGTGCAGACC 
0301 ACCGATTTCT TTTACCCCAT TGTCGATGAT CCCTACATGA TGGGCAAAAT TGCGTGCGCC 
0361 AATGTGCTCA GCGATTTGTA TGCCATGGGA GTCACAGATT GCGATAACAT GCTGATGCTG 
0421 TTGGCGGTCA GTACCAAGAT GACAGAGAAG GAGCGTGACG TGGTCATTCC GCTGATAATG 
0481 CGAGGCTTTA AGGACTCCNC T 
 in silico PCR Fragment
0001 TGAACTCGGC CCATTTGGAG CTCCATGGTG GTGGCGACGC CGAGTTGCGT CGTCCATTCG 
0061 ATCCCACGGC CCATGATTTG GATGCATCCT TCCGCCTTAC ACGCTTCGCA GATCTAAAGG 
0121 GGCGCGGC-T GCAAAGTGCC GCAGGATGTG CTCTCCAAGC TGGTGTCCGC CCTGCAGCAG 
0181 GACTACTCTG CCCAGGACCA GGAACCGCAG TTTCTCAACG TGGCCATTCC CCGCATCGGT 
0241 ATTGGCCTGG ACTGCTCCGT CATTCCGCTG CGACACGGCG GACTCTGCCT GGTGCAGACC 
0301 ACCGATTTCT TTTACCCCAT TGTCGATGAT CCCTACATGA TGGGCAAAAT TGCGTGCGCC 
0361 AATGTGCTCA GCGATTTGTA TGCCATGGGA GTCACAGATT GCGATAACAT GCTGATGCTG 
0421 TTGGCGGTCA GTACCAAGAT GACAGAGAAG GAGCGTGACG TGGTCATTCC GCTGATAATG 
0481 CGAGGCTTTA AGGACTCCGC T 
 Assemble Data

8553R-1.IR_full       1   TGAACTCGGCCCATTTGGAGCTCCATGGTGGTGGCGACGCCGAGTTGCGTCGTCCATTCG 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8553R-1.in silico     1   TGAACTCGGCCCATTTGGAGCTCCATGGTGGTGGCGACGCCGAGTTGCGTCGTCCATTCG 60


8553R-1.IR_full       61  ATCCCACGGCCCATGATTTGGATGCATCCTTCCGCCTTACACGCTTCGCAGATCTAAAGG 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8553R-1.in silico     61  ATCCCACGGCCCATGATTTGGATGCATCCTTCCGCCTTACACGCTTCGCAGATCTAAAGG 120


8553R-1.IR_full       121 GGCGCGGCNTGCAAAGTGCCGCAGGATGTGCTCTCCAAGCTGGTGTCCGCCCTGCAGCAG 180
                          |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
8553R-1.in silico     121 GGCGCGGC-TGCAAAGTGCCGCAGGATGTGCTCTCCAAGCTGGTGTCCGCCCTGCAGCAG 180


8553R-1.IR_full       181 GACTACTCTGCCCAGGACCAGGAACCGCAGTTTCTCAACGTGGCCATTCCCCGCATCGGT 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8553R-1.in silico     181 GACTACTCTGCCCAGGACCAGGAACCGCAGTTTCTCAACGTGGCCATTCCCCGCATCGGT 240


8553R-1.IR_full       241 ATTGGCCTGGACTGCTCCGTCATTCCGCTGCGACACGGCGGACTCTGCCTGGTGCAGACC 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8553R-1.in silico     241 ATTGGCCTGGACTGCTCCGTCATTCCGCTGCGACACGGCGGACTCTGCCTGGTGCAGACC 300


8553R-1.IR_full       301 ACCGATTTCTTTTACCCCATTGTCGATGATCCCTACATGATGGGCAAAATTGCGTGCGCC 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8553R-1.in silico     301 ACCGATTTCTTTTACCCCATTGTCGATGATCCCTACATGATGGGCAAAATTGCGTGCGCC 360


8553R-1.IR_full       361 AATGTGCTCAGCGATTTGTATGCCATGGGAGTCACAGATTGCGATAACATGCTGATGCTG 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8553R-1.in silico     361 AATGTGCTCAGCGATTTGTATGCCATGGGAGTCACAGATTGCGATAACATGCTGATGCTG 420


8553R-1.IR_full       421 TTGGCGGTCAGTACCAAGATGACAGAGAAGGAGCGTGACGTGGTCATTCCGCTGATAATG 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8553R-1.in silico     421 TTGGCGGTCAGTACCAAGATGACAGAGAAGGAGCGTGACGTGGTCATTCCGCTGATAATG 480


8553R-1.IR_full       481 CGAGGCTTTAAGGACTCCNCT 501
                          |||||||||||||||||| ||
8553R-1.in silico     481 CGAGGCTTTAAGGACTCCGCT 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_166045.1  CG32043-RB, transcript variant B (CG32043), mRNA,water dikinase CG8553-RA, transcript variant A (SelD), mRNA 
100   482  NM_166046.1  CG32043-RB, transcript variant B (CG32043), mRNA,water dikinase CG8553-RA, transcript variant A (SelD), mRNA,water dikinase CG8553-RB, transcript variant B (SelD), mRNA 
0   NM_142783.2  CG13849-RA (Nop56), mRNA 
0   NM_206789.1  CG33253-RA (CG33253), mRNA 
0   NM_138126.1  CG3611-RA (CG3611), mRNA 
0   NM_132009.2  CG11473-RA (CG11473), mRNA 
0   13  NM_168357.2  CG32045-RB, transcript variant B (fry), mRNA 
0   13  NM_001043133.1  CG32045-RD, transcript variant D (fry), mRNA 
0   NM_132504.1  CG11695-RA (CG11695), mRNA 
0   NM_079507.2  CG2530-RA (corto), mRNA 
0   NM_141852.1  CG12594-RA (CG12594), mRNA 
0   NM_167570.1  CG8465-RC, transcript variant C (l(1)G0222), mRNA 
0   NM_167569.1  CG8465-RB, transcript variant B (l(1)G0222), mRNA 
0   NM_132993.2  CG8465-RA, transcript variant A (l(1)G0222), mRNA 
0   NM_170399.1  CG11897-RA, transcript variant A (CG11897), mRNA 
0   NM_001014612.1  CG8481-RB, transcript variant B (CG8481), mRNA 
0   NM_141685.3  CG8481-RA, transcript variant A (CG8481), mRNA 
0   NM_142444.1  CG18599-RA (CG18599), mRNA 
0   NM_143421.2  CG11897-RB, transcript variant B (CG11897), mRNA 
0   NM_001043281.1  CG31151-RC, transcript variant C (wge), mRNA 
0   NM_170037.1  CG31151-RA, transcript variant A (wge), mRNA 
0   NM_170038.1  CG31151-RB, transcript variant B (wge), mRNA 
0   NM_057519.3  CG17998-RA (Gprk2), mRNA 
0   NM_206227.1  CG12038-RA, transcript variant A (CG12038), mRNA 
0   NM_206226.1  CG12038-RB, transcript variant B (CG12038), mRNA 
0   NM_136158.2  CG10538-RA (CdGAPr), mRNA 
0   NM_141957.2  CG6359-RA, transcript variant A (CG6359), mRNA 
0   NM_164836.1  CG12437-RA, transcript variant A (raw), mRNA 
0   NM_080050.2  CG12437-RB, transcript variant B (raw), mRNA 
0   NM_142140.1  CG17304-RA (CG17304), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
 
DC
 
DM
 
VM
 
VB
 
Caspase-3 signal
N
DB
DC
 
DM
 
VM
 
VB
 
Dcompartment   Penetrance
     

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