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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
8553R-1 |
Symbol |
SelD |
Full Name |
selenide,water dikinase |
CG No |
CG8553 |
Old CG No |
CG8553 |
Synonyms |
142926_at, selD, CG8553, SPS1, Dm SelD, ptuf1, ptuf, Dm-SelD, SeS, ptf1, l(2)k12303, anon-WO0172774.146, anon-WO0172774.145, SelD |
Accession No (Link to NCBI) |
NM_166045.1 |
Inserted Chr. |
ll |
Insertional Mutation |
lethal |
Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgTGAACTCGGCCCATTTGGAGC |
Primer Seq. 3' |
aatctagaggtaccAGCGGAGTCCTTAAAGCCTCG |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 TGAACTCGGC CCATTTGGAG CTCCATGGTG GTGGCGACGC CGAGTTGCGT CGTCCATTCG
0061 ATCCCACGGC CCATGATTTG GATGCATCCT TCCGCCTTAC ACGCTTCGCA GATCTAAAGG
0121 GGCGCGGCNT GCAAAGTGCC GCAGGATGTG CTCTCCAAGC TGGTGTCCGC CCTGCAGCAG
0181 GACTACTCTG CCCAGGACCA GGAACCGCAG TTTCTCAACG TGGCCATTCC CCGCATCGGT
0241 ATTGGCCTGG ACTGCTCCGT CATTCCGCTG CGACACGGCG GACTCTGCCT GGTGCAGACC
0301 ACCGATTTCT TTTACCCCAT TGTCGATGAT CCCTACATGA TGGGCAAAAT TGCGTGCGCC
0361 AATGTGCTCA GCGATTTGTA TGCCATGGGA GTCACAGATT GCGATAACAT GCTGATGCTG
0421 TTGGCGGTCA GTACCAAGAT GACAGAGAAG GAGCGTGACG TGGTCATTCC GCTGATAATG
0481 CGAGGCTTTA AGGACTCCNC T |
in silico PCR Fragment |
0001 TGAACTCGGC CCATTTGGAG CTCCATGGTG GTGGCGACGC CGAGTTGCGT CGTCCATTCG
0061 ATCCCACGGC CCATGATTTG GATGCATCCT TCCGCCTTAC ACGCTTCGCA GATCTAAAGG
0121 GGCGCGGC-T GCAAAGTGCC GCAGGATGTG CTCTCCAAGC TGGTGTCCGC CCTGCAGCAG
0181 GACTACTCTG CCCAGGACCA GGAACCGCAG TTTCTCAACG TGGCCATTCC CCGCATCGGT
0241 ATTGGCCTGG ACTGCTCCGT CATTCCGCTG CGACACGGCG GACTCTGCCT GGTGCAGACC
0301 ACCGATTTCT TTTACCCCAT TGTCGATGAT CCCTACATGA TGGGCAAAAT TGCGTGCGCC
0361 AATGTGCTCA GCGATTTGTA TGCCATGGGA GTCACAGATT GCGATAACAT GCTGATGCTG
0421 TTGGCGGTCA GTACCAAGAT GACAGAGAAG GAGCGTGACG TGGTCATTCC GCTGATAATG
0481 CGAGGCTTTA AGGACTCCGC T |
Assemble Data |
8553R-1.IR_full 1 TGAACTCGGCCCATTTGGAGCTCCATGGTGGTGGCGACGCCGAGTTGCGTCGTCCATTCG 60
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8553R-1.in silico 1 TGAACTCGGCCCATTTGGAGCTCCATGGTGGTGGCGACGCCGAGTTGCGTCGTCCATTCG 60
8553R-1.IR_full 61 ATCCCACGGCCCATGATTTGGATGCATCCTTCCGCCTTACACGCTTCGCAGATCTAAAGG 120
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8553R-1.in silico 61 ATCCCACGGCCCATGATTTGGATGCATCCTTCCGCCTTACACGCTTCGCAGATCTAAAGG 120
8553R-1.IR_full 121 GGCGCGGCNTGCAAAGTGCCGCAGGATGTGCTCTCCAAGCTGGTGTCCGCCCTGCAGCAG 180
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8553R-1.in silico 121 GGCGCGGC-TGCAAAGTGCCGCAGGATGTGCTCTCCAAGCTGGTGTCCGCCCTGCAGCAG 180
8553R-1.IR_full 181 GACTACTCTGCCCAGGACCAGGAACCGCAGTTTCTCAACGTGGCCATTCCCCGCATCGGT 240
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8553R-1.in silico 181 GACTACTCTGCCCAGGACCAGGAACCGCAGTTTCTCAACGTGGCCATTCCCCGCATCGGT 240
8553R-1.IR_full 241 ATTGGCCTGGACTGCTCCGTCATTCCGCTGCGACACGGCGGACTCTGCCTGGTGCAGACC 300
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8553R-1.in silico 241 ATTGGCCTGGACTGCTCCGTCATTCCGCTGCGACACGGCGGACTCTGCCTGGTGCAGACC 300
8553R-1.IR_full 301 ACCGATTTCTTTTACCCCATTGTCGATGATCCCTACATGATGGGCAAAATTGCGTGCGCC 360
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8553R-1.in silico 301 ACCGATTTCTTTTACCCCATTGTCGATGATCCCTACATGATGGGCAAAATTGCGTGCGCC 360
8553R-1.IR_full 361 AATGTGCTCAGCGATTTGTATGCCATGGGAGTCACAGATTGCGATAACATGCTGATGCTG 420
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8553R-1.in silico 361 AATGTGCTCAGCGATTTGTATGCCATGGGAGTCACAGATTGCGATAACATGCTGATGCTG 420
8553R-1.IR_full 421 TTGGCGGTCAGTACCAAGATGACAGAGAAGGAGCGTGACGTGGTCATTCCGCTGATAATG 480
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8553R-1.in silico 421 TTGGCGGTCAGTACCAAGATGACAGAGAAGGAGCGTGACGTGGTCATTCCGCTGATAATG 480
8553R-1.IR_full 481 CGAGGCTTTAAGGACTCCNCT 501
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8553R-1.in silico 481 CGAGGCTTTAAGGACTCCGCT 501
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
0 |
NM_166045.1 |
CG32043-RB, transcript variant B (CG32043), mRNA,water dikinase CG8553-RA, transcript variant A (SelD), mRNA |
100 |
482 |
0 |
0 |
0 |
NM_166046.1 |
CG32043-RB, transcript variant B (CG32043), mRNA,water dikinase CG8553-RA, transcript variant A (SelD), mRNA,water dikinase CG8553-RB, transcript variant B (SelD), mRNA |
0 |
0 |
4 |
5 |
3 |
NM_142783.2 |
CG13849-RA (Nop56), mRNA |
0 |
0 |
4 |
2 |
4 |
NM_206789.1 |
CG33253-RA (CG33253), mRNA |
0 |
0 |
2 |
2 |
6 |
NM_138126.1 |
CG3611-RA (CG3611), mRNA |
0 |
0 |
2 |
2 |
5 |
NM_132009.2 |
CG11473-RA (CG11473), mRNA |
0 |
0 |
1 |
5 |
13 |
NM_168357.2 |
CG32045-RB, transcript variant B (fry), mRNA |
0 |
0 |
1 |
5 |
13 |
NM_001043133.1 |
CG32045-RD, transcript variant D (fry), mRNA |
0 |
0 |
1 |
4 |
3 |
NM_132504.1 |
CG11695-RA (CG11695), mRNA |
0 |
0 |
1 |
3 |
8 |
NM_079507.2 |
CG2530-RA (corto), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_141852.1 |
CG12594-RA (CG12594), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_167570.1 |
CG8465-RC, transcript variant C (l(1)G0222), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_167569.1 |
CG8465-RB, transcript variant B (l(1)G0222), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_132993.2 |
CG8465-RA, transcript variant A (l(1)G0222), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_170399.1 |
CG11897-RA, transcript variant A (CG11897), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_001014612.1 |
CG8481-RB, transcript variant B (CG8481), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_141685.3 |
CG8481-RA, transcript variant A (CG8481), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_142444.1 |
CG18599-RA (CG18599), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_143421.2 |
CG11897-RB, transcript variant B (CG11897), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_001043281.1 |
CG31151-RC, transcript variant C (wge), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_170037.1 |
CG31151-RA, transcript variant A (wge), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_170038.1 |
CG31151-RB, transcript variant B (wge), mRNA |
0 |
0 |
1 |
2 |
7 |
NM_057519.3 |
CG17998-RA (Gprk2), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_206227.1 |
CG12038-RA, transcript variant A (CG12038), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_206226.1 |
CG12038-RB, transcript variant B (CG12038), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_136158.2 |
CG10538-RA (CdGAPr), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_141957.2 |
CG6359-RA, transcript variant A (CG6359), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_164836.1 |
CG12437-RA, transcript variant A (raw), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_080050.2 |
CG12437-RB, transcript variant B (raw), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_142140.1 |
CG17304-RA (CG17304), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
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