National Institute of Genetics
Contact us      Quick Search       
NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -
Home Home
Japanese | English  
Notice:

Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
NIG-RNAi Strains Detail
Request : Click the "Order" button to request for this stock   request request_help.gif
Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 8453R-3 
 Symbol Cyp6g1  Full Name Cyp6g1 
 CG No CG8453  Old CG No CG8453 
 Synonyms Cyp6gl, CG8453, Rst(2)DDT, 6g1, cyp6g1, RDDT, RI, unnamed, RI[II], RI[DDT], Cyp6-like, anon-WO03025223.17, anon-WO03025223.16, Cyp6g1, DDT-R 
 Accession No (Link to NCBI) NM_136899.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication] 		Yang J, McCart C, Woods DJ, Terhzaz S, Greenwood KG, ffrench-Constant RH, Dow JA.
A Drosophila systems approach to xenobiotic metabolism.
Physiol Genomics (2007) 30(3) 223-31 [ PubMed ID = 17488889 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgATGGTGTTGACCGAGGTCCTC 
 Primer Seq. 3' 
aatctagaggtaccTCTGCAGTGCCAGCTCCAGAT 
 Predicted Fragment Size 
496 
 IR fragment full Seq 
0001 ATGGTGTTGA CCGAGGTCCT CTTTGTGGTG GTCGCCGCAC TGGTGGCGCT CTACACTTGG 
0061 TTCCAGCGCA ACCATAGCTA CTGGCAACGC AAGGGCATAC CCTATATTCC GCCCACGCCG 
0121 ATCATTGGCA ACACCAAGGT GGTCTTCAAG ATGGAGAACT CCTTTGGGAT GCACCTATCG 
0181 GAGATATACA ATGATCCGCG GCTGAAGGAC GAGGCTGTGG TGGGCATCTA CTCCATGAAC 
0241 AAGCCCGGCT TGATAATACG CGACATAGAG CTGATCAAAT CCATTCTGAT CAAGGACTTC 
0301 AATCGGTTCC ACAACCGATA CGCCCGCTGC GATNCCCCAT GGCGATCCAT TGGGCTATAA 
0361 TAACCTGTTC TTCGTCAGGG ATGCCCATTG GAAGGGAATT CGCACCAAGC TGACTCCCGT 
0421 TTTCACCAGC GGCAAGGTCA AGCAGATGTA CACCCTTATG CAGGAGATTG GAAAGGATCT 
0481 GGAGCTGGCA CTGCAGA 
 in silico PCR Fragment 
0001 ATGGTGTTGA CCGAGGTCCT CTTTGTGGTG GTCGCCGCAC TGGTGGCGCT CTACACTTGG 
0061 TTCCAGCGCA ACCATAGCTA CTGGCAACGC AAGGGCATAC CCTATATTCC GCCCACGCCG 
0121 ATCATTGGCA ACACCAAGGT GGTCTTCAAG ATGGAGAACT CCTTTGGGAT GCACCTATCG 
0181 GAGATATACA ATGATCCGCG GCTGAAGGAC GAGGCTGTGG TGGGCATCTA CTCCATGAAC 
0241 AAGCCCGGCT TGATAATACG CGACATAGAG CTGATCAAAT CCATTCTGAT CAAGGACTTC 
0301 AATCGGTTCC ACAACCGATA CGCCCGCTGC GAT-CCCCAT GGCGATCCAT TGGGCTATAA 
0361 TAACCTGTTC TTCGTCAGGG ATGCCCATTG GAAGGGAATT CGCACCAAGC TGACTCCCGT 
0421 TTTCACCAGC GGCAAGGTCA AGCAGATGTA CACCCTTATG CAGGAGATTG GAAAGGATCT 
0481 GGAGCTGGCA CTGCAGA 
 Assemble Data 

8453R-3.IR_full       1   ATGGTGTTGACCGAGGTCCTCTTTGTGGTGGTCGCCGCACTGGTGGCGCTCTACACTTGG 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8453R-3.in silico     1   ATGGTGTTGACCGAGGTCCTCTTTGTGGTGGTCGCCGCACTGGTGGCGCTCTACACTTGG 60


8453R-3.IR_full       61  TTCCAGCGCAACCATAGCTACTGGCAACGCAAGGGCATACCCTATATTCCGCCCACGCCG 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8453R-3.in silico     61  TTCCAGCGCAACCATAGCTACTGGCAACGCAAGGGCATACCCTATATTCCGCCCACGCCG 120


8453R-3.IR_full       121 ATCATTGGCAACACCAAGGTGGTCTTCAAGATGGAGAACTCCTTTGGGATGCACCTATCG 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8453R-3.in silico     121 ATCATTGGCAACACCAAGGTGGTCTTCAAGATGGAGAACTCCTTTGGGATGCACCTATCG 180


8453R-3.IR_full       181 GAGATATACAATGATCCGCGGCTGAAGGACGAGGCTGTGGTGGGCATCTACTCCATGAAC 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8453R-3.in silico     181 GAGATATACAATGATCCGCGGCTGAAGGACGAGGCTGTGGTGGGCATCTACTCCATGAAC 240


8453R-3.IR_full       241 AAGCCCGGCTTGATAATACGCGACATAGAGCTGATCAAATCCATTCTGATCAAGGACTTC 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8453R-3.in silico     241 AAGCCCGGCTTGATAATACGCGACATAGAGCTGATCAAATCCATTCTGATCAAGGACTTC 300


8453R-3.IR_full       301 AATCGGTTCCACAACCGATACGCCCGCTGCGATNCCCCATGGCGATCCATTGGGCTATAA 360
                          ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
8453R-3.in silico     301 AATCGGTTCCACAACCGATACGCCCGCTGCGAT-CCCCATGGCGATCCATTGGGCTATAA 360


8453R-3.IR_full       361 TAACCTGTTCTTCGTCAGGGATGCCCATTGGAAGGGAATTCGCACCAAGCTGACTCCCGT 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8453R-3.in silico     361 TAACCTGTTCTTCGTCAGGGATGCCCATTGGAAGGGAATTCGCACCAAGCTGACTCCCGT 420


8453R-3.IR_full       421 TTTCACCAGCGGCAAGGTCAAGCAGATGTACACCCTTATGCAGGAGATTGGAAAGGATCT 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8453R-3.in silico     421 TTTCACCAGCGGCAAGGTCAAGCAGATGTACACCCTTATGCAGGAGATTGGAAAGGATCT 480


8453R-3.IR_full       481 GGAGCTGGCACTGCAGA 497
                          |||||||||||||||||
8453R-3.in silico     481 GGAGCTGGCACTGCAGA 497



 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   478  0  0  0  NM_136899.2  CG8453-RA (Cyp6g1), mRNA 
0.2   1  3  4  2  NM_143761.2  CG10241-RA (Cyp6a17), mRNA 
0.2   1  3  4  2  NM_137156.2  CG10242-RA (Cyp6a23), mRNA 
0.2   1  2  2  4  NM_001043134.1  CG7368-RB (CG7368), mRNA 
0   0  5  4  6  NM_136932.1  CG8511-RA (CG8511), mRNA 
0   0  4  2  12  NM_136545.1  CG8687-RB, transcript variant B (Cyp6a14), mRNA 
0   0  4  2  12  NM_165610.1  CG8687-RA, transcript variant A (Cyp6a14), mRNA 
0   0  2  5  3  NM_078944.4  CG1519-RB, transcript variant B (Prosalpha7), mRNA 
0   0  2  5  3  NM_165703.1  CG1519-RA, transcript variant A (Prosalpha7), mRNA 
0   0  2  4  2  NM_167575.1  CG5884-RB, transcript variant B (par-6), mRNA 
0   0  2  4  2  NM_133010.4  CG5884-RA, transcript variant A (par-6), mRNA 
0   0  2  3  4  NM_001042852.1  CG12500-RB, transcript variant B (stnA), mRNA 
0   0  2  3  4  NM_001042851.1  CG12500-RA, transcript variant A (stnA), mRNA 
0   0  2  3  4  NM_001042854.1  CG12473-RB, transcript variant B (stnB), mRNA 
0   0  2  3  4  NM_001042853.1  CG12473-RA, transcript variant A (stnB), mRNA 
0   0  2  3  3  NM_164350.1  CG2671-RD, transcript variant D (l(2)gl), mRNA 
0   0  2  3  3  NM_164351.1  CG2671-RE, transcript variant E (l(2)gl), mRNA 
0   0  2  3  3  NM_164348.1  CG2671-RB, transcript variant B (l(2)gl), mRNA 
0   0  2  3  3  NM_164352.1  CG2671-RF, transcript variant F (l(2)gl), mRNA 
0   0  2  3  3  NM_078715.2  CG2671-RC, transcript variant C (l(2)gl), mRNA 
0   0  2  3  3  NM_164349.1  CG2671-RA, transcript variant A (l(2)gl), mRNA 
0   0  2  2  5  NM_001032074.1  CG6713-RJ, transcript variant J (Nos), mRNA 
0   0  2  2  5  NM_001032075.1  CG6713-RI, transcript variant I (Nos), mRNA 
0   0  2  2  5  NM_001032067.1  CG6713-RH, transcript variant H (Nos), mRNA 
0   0  2  2  5  NM_001032073.1  CG6713-RB, transcript variant B (Nos), mRNA 
0   0  2  2  5  NM_001032069.1  CG6713-RF, transcript variant F (Nos), mRNA 
0   0  2  2  5  NM_001032068.1  CG6713-RG, transcript variant G (Nos), mRNA 
0   0  2  2  5  NM_078817.3  CG6713-RA, transcript variant A (Nos), mRNA 
0   0  2  2  5  NM_001032071.1  CG6713-RD, transcript variant D (Nos), mRNA 
0   0  2  2  5  NM_001032072.1  CG6713-RC, transcript variant C (Nos), mRNA 

SHIGEN - SHared Information of GENetic resources - National Institute of Genetics (NIG)
 Copyright (c) National Institute of Genetics (NIG)
All rights reserved.
The NIG-Fly is a part of the National BioResource Project which started in 2002.