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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 8451R-4 
 Symbol CG8451  Full Name CG8451 
 CG No CG8451  Old CG No CG8451 
 Synonyms CG8451 
 Accession No (Link to NCBI) NM_135348.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Duncan OF, Granat L, Ranganathan R, Singh VK, Mazaud D, Fanto M, Chambers D, Ballard CG, Bateman JM.
Ras-ERK-ETS inhibition alleviates neuronal mitochondrial dysfunction by reprogramming mitochondrial retrograde signaling.
PLoS Genet (2018) 14(7) e1007567 [ PubMed ID = 30059502 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCGCCAAAAAGGCGGAAACACG 
 Primer Seq. 3'
aatctagaggtaccGACCAGCACCTGCCAAGCATC 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CGCCCAAAAA GGCGGAAACA CGATTTCGGA TCGGAGAAGA TGAGCGAGTA TCTGCTCGGG 
0061 TCACGCAATC TGAAAGTTTT CCCCGTTGCC ATGAGCCTGA TAGCCAGCTA TATATCGGGC 
0121 GTTACCATAC TGGGCACAAC CTCTGAGATC TACAATTATG GCACGCAATA TTGGTTTATA 
0181 GCCATCGCAA TAGTGCTCCA AGGTATCGCC GTCTCCTACG TCTACATACC AGTGTTCTCG 
0241 GCTCTTCAAG TAGGCTCTTC CTATGAGTAC TTGGAGATGC GCTTTCATTC GGTCGTACGA 
0301 AGTATTGCAT CCTTTATGTT TATTCTGGAT GAGATTCTGT TTCTGCCTTT CATTGTGTAT 
0361 GTACCAGCTA TAGCTCTGAA TCAGGTATCG GGCATTAATC TCCATGTGAT TGCAGTGGTG 
0421 ATTGTAGTCG TGTGTGTTTT CTACACCTTT GTCGGAGGAA TCAAAGCAGT GGTCCACACA 
0481 GATGCTTGGC AGGTGCTggt c 
 in silico PCR Fragment
0001 CG-CCAAAAA GGCGGAAACA CGATTTCGGA TCGGAGAAGA TGAGCGAGTA TCTGCTAGGG 
0061 TCACGCAATC TGAAAGTTTT CCCCGTTGCC ATGAGCCTGA TAGCCAGCTA TATATCGGGC 
0121 GTTACCATAC TGGGCACAAC CTCTGAGATC TACAATTATG GCACGCAATA TTGGTTTATA 
0181 GCCATAGCAA TAATGCTCCA AGGTATTGCC GTCTCCTACG TCTACATACC AGTGTTCTCG 
0241 GCTCTTCAAG TAGGCTCTTC CTATGAGTAC TTGGAGATGC GCTTTCATTC GGTCGTACGA 
0301 AGTATTGCAT CCTTTATGTT TATTCTGGAT GAGATTCTGT TTCTGCCTTT CATTGTGTAT 
0361 GTACCAGCTA TAGCTCTGAA TCAGGTATCG GGCATTAATC TCCATGTGAT TGCAGTGGTA 
0421 ATTGTGGTCG TGTGTGTTTT CTACACCTTT GTCGGAGGAA TCAAAGCAGT GGTCCACACA 
0481 GATGCTTGGC AGGTGCTGGT C 
 Assemble Data

8451R-4.IR_full       1   CGCCCAAAAAGGCGGAAACACGATTTCGGATCGGAGAAGATGAGCGAGTATCTGCTCGGG 60
                          || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
8451R-4.in silico     1   CG-CCAAAAAGGCGGAAACACGATTTCGGATCGGAGAAGATGAGCGAGTATCTGCTAGGG 60


8451R-4.IR_full       61  TCACGCAATCTGAAAGTTTTCCCCGTTGCCATGAGCCTGATAGCCAGCTATATATCGGGC 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8451R-4.in silico     61  TCACGCAATCTGAAAGTTTTCCCCGTTGCCATGAGCCTGATAGCCAGCTATATATCGGGC 120


8451R-4.IR_full       121 GTTACCATACTGGGCACAACCTCTGAGATCTACAATTATGGCACGCAATATTGGTTTATA 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8451R-4.in silico     121 GTTACCATACTGGGCACAACCTCTGAGATCTACAATTATGGCACGCAATATTGGTTTATA 180


8451R-4.IR_full       181 GCCATCGCAATAGTGCTCCAAGGTATCGCCGTCTCCTACGTCTACATACCAGTGTTCTCG 240
                          ||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||
8451R-4.in silico     181 GCCATAGCAATAATGCTCCAAGGTATTGCCGTCTCCTACGTCTACATACCAGTGTTCTCG 240


8451R-4.IR_full       241 GCTCTTCAAGTAGGCTCTTCCTATGAGTACTTGGAGATGCGCTTTCATTCGGTCGTACGA 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8451R-4.in silico     241 GCTCTTCAAGTAGGCTCTTCCTATGAGTACTTGGAGATGCGCTTTCATTCGGTCGTACGA 300


8451R-4.IR_full       301 AGTATTGCATCCTTTATGTTTATTCTGGATGAGATTCTGTTTCTGCCTTTCATTGTGTAT 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8451R-4.in silico     301 AGTATTGCATCCTTTATGTTTATTCTGGATGAGATTCTGTTTCTGCCTTTCATTGTGTAT 360


8451R-4.IR_full       361 GTACCAGCTATAGCTCTGAATCAGGTATCGGGCATTAATCTCCATGTGATTGCAGTGGTG 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
8451R-4.in silico     361 GTACCAGCTATAGCTCTGAATCAGGTATCGGGCATTAATCTCCATGTGATTGCAGTGGTA 420


8451R-4.IR_full       421 ATTGTAGTCGTGTGTGTTTTCTACACCTTTGTCGGAGGAATCAAAGCAGTGGTCCACACA 480
                          ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
8451R-4.in silico     421 ATTGTGGTCGTGTGTGTTTTCTACACCTTTGTCGGAGGAATCAAAGCAGTGGTCCACACA 480


8451R-4.IR_full       481 GATGCTTGGCAGGTGCTGGTC 501
                          |||||||||||||||||||||
8451R-4.in silico     481 GATGCTTGGCAGGTGCTGGTC 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_135348.2  CG8451-RA (CG8451), mRNA 
1.45   NM_143634.2  CG2191-RA (CG2191), mRNA 
0   NM_142336.1  CG3983-RB, transcript variant B (CG3983), mRNA 
0   NM_169742.1  CG3983-RA, transcript variant A (CG3983), mRNA 
0   NM_166757.1  CG1710-RC, transcript variant C (Hcf), mRNA 
0   NM_166756.1  CG1710-RB, transcript variant B (Hcf), mRNA 
0   NM_079882.2  CG1710-RA, transcript variant A (Hcf), mRNA 
0   NM_205873.1  CG1710-RD, transcript variant D (Hcf), mRNA 
0   NM_176177.1  CG33139-RA (Ranbp11), mRNA 
0   NM_130601.2  CG32803-RA, transcript variant A (CG32803), mRNA 
0   NM_001038733.1  CG32803-RB, transcript variant B (CG32803), mRNA 
0   NM_001043174.1  CG40053-RA (CG40053), mRNA 
0   NM_001043173.1  CG40044-RA (CG40044), mRNA 
0   NM_170466.1  CG31025-RA, transcript variant A (CG31025), mRNA 
0   NM_170467.1  CG31025-RB, transcript variant B (CG31025), mRNA 
0   16  42  NM_175948.1  CG33124-RA (CG33124), mRNA 
0   15  37  NM_169752.1  CG31262-RA (CG31262), mRNA 
0   NM_205883.1  CG4574-RD, transcript variant D (Plc21C), mRNA 
0   NM_057503.4  CG4574-RB, transcript variant B (Plc21C), mRNA 
0   NM_205882.1  CG4574-RF, transcript variant F (Plc21C), mRNA 
0   NM_205884.1  CG4574-RC, transcript variant C (Plc21C), mRNA 
0   NM_057504.4  CG4574-RA, transcript variant A (Plc21C), mRNA 
0   NM_140842.1  CG9629-RA (CG9629), mRNA 
0   10  NM_132169.1  CG9657-RA (CG9657), mRNA 
0   NM_131997.1  CG16752-RA (CG16752), mRNA 
0   NM_206521.1  CG4257-RF, transcript variant F (Stat92E), mRNA 
0   NM_206520.1  CG4257-RE, transcript variant E (Stat92E), mRNA 
0   NM_130656.2  CG9904-RA (CG9904), mRNA 
0   NM_143410.2  CG11874-RA (CG11874), mRNA 
0   NM_143585.2  CG11318-RA (CG11318), mRNA 

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