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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 8414R-1 
 Symbol CG8414  Full Name CG8414 
 CG No CG8414  Old CG No CG8414 
 Synonyms CG8414 
 Accession No (Link to NCBI) NM_137240.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCCCTACCCAAAAAGAATCCTG 
 Primer Seq. 3'
aatctagaggtaccTCGAACTGTTCCACTGCCATC 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CCCTACCCAA AAAGAATCCT GTAAATAAAT CCTCAAATGT TGCAGCTAAA AAATCTGCAG 
0061 CAACAAGCAA AAGTGCTAAG CTTCCTATTC CCAAGGTTCA TAGTATAAAT GAATTAGCTC 
0121 CTAAGAAAAC CAAAGTCAAG ACGCCAAATA AAACAAAAGA AGCAAGTTTA TCTAAGAAAC 
0181 ATAAGGTAAA TGGAAACAAG AGCTCAATGA AGGTCGTACA AAATGGTAAA GTAGTAGAGA 
0241 TAATTGGTAC TGCAGCGGAA ACAAGTGACA TTGAAATGAA TTCATTGGAT GATTGGAGTG 
0301 AAGAAGACGA TTATTTAATT GAAAGTGACT CTGAAAACGA TGTAGTTGAA GAAATAGACG 
0361 AGACATTTCT TAAAGATCCA AAGATTTTTA AGGTCAAATG CAAAGGCCCC GAATACAAGT 
0421 TATCAGATAT TCTTCCTCCT TTTGAACACG ATGAATACCA ACCTCTTTTG TTGGATGGGG 
0481 ATGGCAGTGG AACAGTTCGA  
 in silico PCR Fragment
0001 CCCTACCCAA AAAGAATCCT GTAAATAAAT CCTCAAATGT TGCAGCTAAA AAATCTGCAG 
0061 CAACAAGCAA AAGTGCTAAG CTTCCTATTC CCAAGGTTCA TAGTATAAAT GAATTAGCTC 
0121 CTAAGAAAAC CAAAGTCAAG ACGCCAAATA AAACAAAAGA AGCAAGTTTA TCTAAGAAAC 
0181 ATAAGGTAAA TGGAAACAAG AGCTCAATGA AGGTCGTACA AAATGGTAAA GTAGTAGAGA 
0241 TAATTGGTAC TGCAGCGGAA ACAAGTGACA TTGAAATGAA TTCATTGGAT GATTGGAGTG 
0301 AAGAAGACGA TTATTTAATT GAAAGTGACT CTGAAAACGA TGTAGTTGAA GAAATAGACG 
0361 AGACATTTCT TAAAGATCCA AAGATTTTTA AGGTCAAATG CAAAGGCCCC GAATACAAGT 
0421 TATCAGATAT TCTTCCTCCT TTTGAACACG ATGAATACCA ACCTCTTTTG TTGGATGGGG 
0481 ATGGCAGTGG AACAGTTCGA  
 Assemble Data

8414R-1.IR_full       1   CCCTACCCAAAAAGAATCCTGTAAATAAATCCTCAAATGTTGCAGCTAAAAAATCTGCAG 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8414R-1.in silico     1   CCCTACCCAAAAAGAATCCTGTAAATAAATCCTCAAATGTTGCAGCTAAAAAATCTGCAG 60


8414R-1.IR_full       61  CAACAAGCAAAAGTGCTAAGCTTCCTATTCCCAAGGTTCATAGTATAAATGAATTAGCTC 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8414R-1.in silico     61  CAACAAGCAAAAGTGCTAAGCTTCCTATTCCCAAGGTTCATAGTATAAATGAATTAGCTC 120


8414R-1.IR_full       121 CTAAGAAAACCAAAGTCAAGACGCCAAATAAAACAAAAGAAGCAAGTTTATCTAAGAAAC 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8414R-1.in silico     121 CTAAGAAAACCAAAGTCAAGACGCCAAATAAAACAAAAGAAGCAAGTTTATCTAAGAAAC 180


8414R-1.IR_full       181 ATAAGGTAAATGGAAACAAGAGCTCAATGAAGGTCGTACAAAATGGTAAAGTAGTAGAGA 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8414R-1.in silico     181 ATAAGGTAAATGGAAACAAGAGCTCAATGAAGGTCGTACAAAATGGTAAAGTAGTAGAGA 240


8414R-1.IR_full       241 TAATTGGTACTGCAGCGGAAACAAGTGACATTGAAATGAATTCATTGGATGATTGGAGTG 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8414R-1.in silico     241 TAATTGGTACTGCAGCGGAAACAAGTGACATTGAAATGAATTCATTGGATGATTGGAGTG 300


8414R-1.IR_full       301 AAGAAGACGATTATTTAATTGAAAGTGACTCTGAAAACGATGTAGTTGAAGAAATAGACG 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8414R-1.in silico     301 AAGAAGACGATTATTTAATTGAAAGTGACTCTGAAAACGATGTAGTTGAAGAAATAGACG 360


8414R-1.IR_full       361 AGACATTTCTTAAAGATCCAAAGATTTTTAAGGTCAAATGCAAAGGCCCCGAATACAAGT 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8414R-1.in silico     361 AGACATTTCTTAAAGATCCAAAGATTTTTAAGGTCAAATGCAAAGGCCCCGAATACAAGT 420


8414R-1.IR_full       421 TATCAGATATTCTTCCTCCTTTTGAACACGATGAATACCAACCTCTTTTGTTGGATGGGG 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8414R-1.in silico     421 TATCAGATATTCTTCCTCCTTTTGAACACGATGAATACCAACCTCTTTTGTTGGATGGGG 480


8414R-1.IR_full       481 ATGGCAGTGGAACAGTTCGA 500
                          ||||||||||||||||||||
8414R-1.in silico     481 ATGGCAGTGGAACAGTTCGA 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_137240.2  CG8414-RA (CG8414), mRNA 
0   11  NM_057493.3  CG3178-RA (Rrp1), mRNA 
0   NM_057883.2  CG10117-RA (ttv), mRNA 
0   NM_001014624.1  CG33555-RC, transcript variant C (btsz), mRNA 
0   NM_001014623.1  CG33555-RD, transcript variant D (btsz), mRNA 
0   NM_001014622.1  CG33555-RA, transcript variant A (btsz), mRNA 
0   NM_001014625.1  CG33555-RB, transcript variant B (btsz), mRNA 
0   NM_135572.2  CG6094-RA (CG6094), mRNA 
0   NM_167127.1  CG32726-RA (CG32726), mRNA 
0   NM_141977.2  CG10126-RA, transcript variant A (CG10126), mRNA 
0   NM_176487.1  CG10126-RB, transcript variant B (CG10126), mRNA 
0   NM_135335.2  CG7424-RA (RpL36A), mRNA 
0   NM_133037.2  CG7536-RA, transcript variant A (CG7536), mRNA 
0   NM_167599.1  CG7536-RB, transcript variant B (CG7536), mRNA 
0   NM_165003.1  CG31762-RC, transcript variant C (aret), mRNA 
0   NM_168510.1  CG10984-RB, transcript variant B (CG10984), mRNA 
0   NM_136272.2  CG1506-RA, transcript variant A (Ac3), mRNA 
0   NM_165389.1  CG1506-RB, transcript variant B (Ac3), mRNA 
0   NM_001014496.1  CG1506-RC, transcript variant C (Ac3), mRNA 
0   NM_142684.2  CG5745-RA (CG5745), mRNA 
0   22  NM_144448.2  CG1915-RC, transcript variant C (sls), mRNA 
0   12  NM_206332.1  CG18331-RA (CG18331), mRNA 
0   NM_057339.3  CG9181-RA, transcript variant A (Ptp61F), mRNA 
0   NM_136093.2  CG10492-RA (CG10492), mRNA 
0   NM_167875.1  CG9181-RD, transcript variant D (Ptp61F), mRNA 
0   NM_168498.1  CG32103-RB, transcript variant B (CG32103), mRNA 
0   NM_206345.1  CG32103-RA, transcript variant A (CG32103), mRNA 
0   NM_167227.1  CG32686-RA, transcript variant A (CG32686), mRNA 
0   NM_167226.1  CG32686-RB, transcript variant B (CG32686), mRNA 
0   NM_168499.1  CG32103-RC, transcript variant C (CG32103), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
 
DC
+- 
DM
 
VM
 
VB
 
Caspase-3 signal
N
++ 
DB
DC
++ 
DM
VM
 
VB
 
Dcompartment   Penetrance
     

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