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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 8245R-1 
 Symbol CG8245  Full Name CG8245 
 CG No CG8245  Old CG No CG8245 
 Synonyms CG8245 
 Accession No (Link to NCBI) NM_136334.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Umetsu D, Dunst S, Dahmann C.
An RNA interference screen for genes required to shape the anteroposterior compartment boundary in Drosophila identifies the Eph receptor.
PLoS One (2014) 9(12) e114340 [ PubMed ID = 25473846 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCCCGTGCGGGTTAAACGCTGA 
 Primer Seq. 3'
aatctagaggtaccCGCGAACTTGCAGCGGAGACT 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CCCGTGCGGG TTAAACGCTG ATGGCACAGc CACCCAGTAT AAAGAATCTA CGGCCACCAT 
0061 ACAAACTTCT GGTCTTCAGT CATCACCTAG GTCCTTTCTA CCAGAGCGAG AGGATACGTT 
0121 AGAGTACTTC ATAAAGTTTC CGAAGCCTTC ATCTAAAAAT GAGTTTGTAC TAGCTAAGGA 
0181 CCATGATGGC GAGGACAGCC ACGTGCCCAT TGTCATGCTG TTGGGGTGGG CGGGCTGTCA 
0241 GGATCGATAC CTCATGAAAT ACTCAAAAAT TTACGAGGAG CGGGGCTTAA TTACTGTGCG 
0301 ATACACGGCT CCGGTAGACA GCCTATTTTG GAAGCGATCT GAAATGATTC CTATCGGCGA 
0361 GAAAATCCTT AAACTAATCC AGGACATGAA TTTTGACGCC CATCCGACTA ATATTTCACA 
0421 TATTTTCCAA TgGCGGAGCC TACTTGTACC AACATATTAA TTTAGCTGTG ATCAAGCACA 
0481 AGTCTCCGCT GCAAGTTCGC G 
 in silico PCR Fragment
0001 CCCGTGCGGG TTAAACGCTG ATGGCACAGC CACCCAGTAT AAAGAATCTA CGGCCACCAT 
0061 ACAAACTTCT GGTCTTCAGT CATCACCTAG GTCCTTTCTA CCAGAGCGAG AGGATACGTT 
0121 AGAGTACTTC ATAAAGTTTC CGAAGCCTTC ATCTAAAAAT GAGTTTGTAC TAGCTAAGGA 
0181 CCATGATGGC GAGGACAGCC ACGTGCCCAT TGTCATGCTG TTGGGGTGGG CGGGCTGTCA 
0241 GGATCGATAC CTCATGAAAT ACTCAAAAAT TTACGAGGAG CGGGGCTTAA TTACTGTGCG 
0301 ATACACGGCT CCGGTAGACA GCCTATTTTG GAAGCGATCT GAAATGATTC CTATCGGCGA 
0361 GAAAATCCTT AAACTAATCC AGGACATGAA TTTTGACGCC CATCC-ACTA ATATTTCACA 
0421 TATTTTCCAA TGGCGGAGCC TACTTGTACC AACATATTAA TTTAGCTGTG ATCAAGCACA 
0481 AGTCTCCGCT GCAAGTTCGC G 
 Assemble Data

8245R-1.IR_full       1   CCCGTGCGGGTTAAACGCTGATGGCACAGCCACCCAGTATAAAGAATCTACGGCCACCAT 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8245R-1.in silico     1   CCCGTGCGGGTTAAACGCTGATGGCACAGCCACCCAGTATAAAGAATCTACGGCCACCAT 60


8245R-1.IR_full       61  ACAAACTTCTGGTCTTCAGTCATCACCTAGGTCCTTTCTACCAGAGCGAGAGGATACGTT 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8245R-1.in silico     61  ACAAACTTCTGGTCTTCAGTCATCACCTAGGTCCTTTCTACCAGAGCGAGAGGATACGTT 120


8245R-1.IR_full       121 AGAGTACTTCATAAAGTTTCCGAAGCCTTCATCTAAAAATGAGTTTGTACTAGCTAAGGA 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8245R-1.in silico     121 AGAGTACTTCATAAAGTTTCCGAAGCCTTCATCTAAAAATGAGTTTGTACTAGCTAAGGA 180


8245R-1.IR_full       181 CCATGATGGCGAGGACAGCCACGTGCCCATTGTCATGCTGTTGGGGTGGGCGGGCTGTCA 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8245R-1.in silico     181 CCATGATGGCGAGGACAGCCACGTGCCCATTGTCATGCTGTTGGGGTGGGCGGGCTGTCA 240


8245R-1.IR_full       241 GGATCGATACCTCATGAAATACTCAAAAATTTACGAGGAGCGGGGCTTAATTACTGTGCG 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8245R-1.in silico     241 GGATCGATACCTCATGAAATACTCAAAAATTTACGAGGAGCGGGGCTTAATTACTGTGCG 300


8245R-1.IR_full       301 ATACACGGCTCCGGTAGACAGCCTATTTTGGAAGCGATCTGAAATGATTCCTATCGGCGA 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8245R-1.in silico     301 ATACACGGCTCCGGTAGACAGCCTATTTTGGAAGCGATCTGAAATGATTCCTATCGGCGA 360


8245R-1.IR_full       361 GAAAATCCTTAAACTAATCCAGGACATGAATTTTGACGCCCATCCGACTAATATTTCACA 420
                          ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
8245R-1.in silico     361 GAAAATCCTTAAACTAATCCAGGACATGAATTTTGACGCCCATCC-ACTAATATTTCACA 420


8245R-1.IR_full       421 TATTTTCCAATGGCGGAGCCTACTTGTACCAACATATTAATTTAGCTGTGATCAAGCACA 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8245R-1.in silico     421 TATTTTCCAATGGCGGAGCCTACTTGTACCAACATATTAATTTAGCTGTGATCAAGCACA 480


8245R-1.IR_full       481 AGTCTCCGCTGCAAGTTCGCG 501
                          |||||||||||||||||||||
8245R-1.in silico     481 AGTCTCCGCTGCAAGTTCGCG 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_136334.2  CG8245-RA (CG8245), mRNA 
0   NM_057676.3  CG11312-RA (insc), mRNA 
0   NM_139523.1  CG12734-RA, transcript variant A (CG12734), mRNA 
0   NM_206262.1  CG12734-RB, transcript variant B (CG12734), mRNA 
0   NM_140888.2  CG8743-RA (CG8743), mRNA 
0   NM_135849.2  CG8942-RA (CG8942), mRNA 
0   NM_141737.2  CG6293-RA (CG6293), mRNA 
0   NM_001038826.1  CG10462-RB, transcript variant B (CG10462), mRNA 
0   NM_136152.2  CG10462-RA, transcript variant A (CG10462), mRNA 
0   NM_001038825.1  CG10462-RC, transcript variant C (CG10462), mRNA 
0   NM_137704.2  CG9394-RA (CG9394), mRNA 
0   NM_135392.3  CG13096-RA (CG13096), mRNA 
0   NM_168179.1  CG32394-RA (CG32394), mRNA 
0   NM_140034.2  CG4641-RA (CG4641), mRNA 
0   NM_143061.1  CG13648-RA (tnc), mRNA 
0   NM_141744.2  CG4043-RA (Rrp46), mRNA 
0   NM_136693.2  CG12130-RA (CG12130), mRNA 
0   NM_135342.2  CG8506-RA (CG8506), mRNA 
0   NM_142819.1  CG6954-RA (CG6954), mRNA 
0   NM_080536.2  CG4013-RA, transcript variant A (Smr), mRNA 
0   NM_167334.1  CG4013-RB, transcript variant B (Smr), mRNA 
0   NM_167335.1  CG4013-RC, transcript variant C (Smr), mRNA 
0   NM_139861.2  CG8562-RA (CG8562), mRNA 
0   NM_137588.1  CG15904-RA (CG15904), mRNA 
0   NM_135277.2  CG12789-RB, transcript variant B (CG12789), mRNA 
0   NM_164752.2  CG12789-RA, transcript variant A (CG12789), mRNA 
0   NM_176545.1  CG4620-RA, transcript variant A (unk), mRNA 
0   NM_176546.1  CG4620-RB, transcript variant B (unk), mRNA 
0   NM_169314.1  CG31405-RA (Gr85a), mRNA 
0   NM_140070.2  CG3424-RA, transcript variant A (path), mRNA 

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