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Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
8095R-1 |
| Symbol |
scb |
Full Name |
scab |
| CG No |
CG8095 |
Old CG No |
CG8095 |
| Synonyms |
alphaPS3, E(sev-cycE)[e93], PS3, vol, alpha[[PS3]], alpha-PS3, Vol, CG8095, CT36929, CT21280, Dm0620, aPS3, E(Sev-CycE)E93, l(2)01288, alphaInt3, scb |
| Accession No (Link to NCBI) |
NM_079026.2 |
| Inserted Chr. |
ll |
| Insertional Mutation |
lethal |
| Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
| Map Viewer |
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Reference
[Please submit your publication]
|
Álvarez-Fernández C, Tamirisa S, Prada F, Chernomoretz A, Podhajcer O, Blanco E, Martín-Blanco E.
Identification and functional analysis of healing regulators in Drosophila.
PLoS Genet (2015) 11(2) e1004965
[
PubMed ID = 25647511
]
[
RRC reference
]
Nonaka S, Nagaosa K, Mori T, Shiratsuchi A, Nakanishi Y.
Integrin αPS3/βν-mediated phagocytosis of apoptotic cells and bacteria in Drosophila.
J Biol Chem (2013) 288(15) 10374-80
[
PubMed ID = 23426364
]
[
RRC reference
]
Xie X, Auld VJ.
Integrins are necessary for the development and maintenance of the glial layers in the Drosophila peripheral nerve.
Development (2011) 138(17) 3813-22
[
PubMed ID = 21828098
]
[
RRC reference
]
|
| Comment |
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgGAATCGACAATGTTCCCTCAC |
| Primer Seq. 3' |
aatctagaggtaccGCCACCGTATTATTCACCCAG |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 NAATCGACAA TGTTCCCTCA CATATTCCTC GCCCTCTTGG CTCTGATCTC TCACATCGAA
0061 GCATTCAATT TTATGCCGCG ACCCAGTCGG GTGATAAACT CCCCGAAGCA TCTGAAGTTC
0121 CACATAAACC AGACTCGCAG CTCCTACTTT GGATACACGC TTGTCATCCG CCAGACCAGC
0181 ATCATTGTGG GAGCCCCTAG AGCTCAATCC ACCTTGGAAT CGCAACGCAC CATCAACGAA
0241 ACGGGAGCGA TCTACAGGTG CTCCCTGACA AACGGTGTGT GCAGTCCATA TGTCCTGGAT
0301 TCCCGGGGCA ATGTGGATGC GCCCTATAGT GAGTACACAT TTGATTCGGA ACGCAAGGAC
0361 TTTCAATGGC TGGGCGGATC GATGGACGGC GGCACCAAGG ACACGGACAA GCTCCTCGTG
0421 TGTGCTCCTC GGTTCTACGC TCCCAGTTCC CGGGACAACC ACCTGCATGG AGTCTGCTAC
0481 TGGGTGAATA ATACGGTGGC |
| in silico PCR Fragment |
0001 GAATCGACAA TGTTCCCTCA CATATTCCTC GCCCTCTTGG CTCTGATCTC TCACATCGAA
0061 GCATTCAATT TTATGCCGCG ACCCAGTCGG GTGATAAACT CCCCGAAGCA TCTGAAGTTC
0121 CACATAAACC AGACTCGCAG CTCCTACTTT GGATACACGC TTGTCATCCG CCAGACCAGC
0181 ATCATTGTGG GAGCCCCTAG AGCTCAATCC ACCTTGGAAT CGCAACGCAC CATCAACGAA
0241 ACGGGAGCGA TCTACAGATG CTCCCTGACA AACGGTGTGT GCAGTCCATA TGTCCTGGAT
0301 TCCCGGGGCA ATGTGGATGC GCCCTATAGT GAGTACACAT TTGATTCGGA ACGCAAGGAC
0361 TTTCAATGGC TGGGCGGATC GATGGACGGC GGCACCAAGG ACACGGACAA GCTCCTCGTG
0421 TGTGCTCCTC GGTTCTACGC TCCCAGTTCC CGGGACAACC ACCTGCATGG AGTCTGCTAC
0481 TGGGTGAATA ATACGGTGGC |
| Assemble Data |
8095R-1.IR_full 1 AATCGACAATGTTCCCTCACATATTCCTCGCCCTCTTGGCTCTGATCTCTCACATCGAA 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8095R-1.in silico 1 AATCGACAATGTTCCCTCACATATTCCTCGCCCTCTTGGCTCTGATCTCTCACATCGAA 59
8095R-1.IR_full 61 GCATTCAATTTTATGCCGCGACCCAGTCGGGTGATAAACTCCCCGAAGCATCTGAAGTTC 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8095R-1.in silico 61 GCATTCAATTTTATGCCGCGACCCAGTCGGGTGATAAACTCCCCGAAGCATCTGAAGTTC 119
8095R-1.IR_full 121 CACATAAACCAGACTCGCAGCTCCTACTTTGGATACACGCTTGTCATCCGCCAGACCAGC 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8095R-1.in silico 121 CACATAAACCAGACTCGCAGCTCCTACTTTGGATACACGCTTGTCATCCGCCAGACCAGC 179
8095R-1.IR_full 181 ATCATTGTGGGAGCCCCTAGAGCTCAATCCACCTTGGAATCGCAACGCACCATCAACGAA 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8095R-1.in silico 181 ATCATTGTGGGAGCCCCTAGAGCTCAATCCACCTTGGAATCGCAACGCACCATCAACGAA 239
8095R-1.IR_full 241 ACGGGAGCGATCTACAGGTGCTCCCTGACAAACGGTGTGTGCAGTCCATATGTCCTGGAT 299
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
8095R-1.in silico 241 ACGGGAGCGATCTACAGATGCTCCCTGACAAACGGTGTGTGCAGTCCATATGTCCTGGAT 299
8095R-1.IR_full 301 TCCCGGGGCAATGTGGATGCGCCCTATAGTGAGTACACATTTGATTCGGAACGCAAGGAC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8095R-1.in silico 301 TCCCGGGGCAATGTGGATGCGCCCTATAGTGAGTACACATTTGATTCGGAACGCAAGGAC 359
8095R-1.IR_full 361 TTTCAATGGCTGGGCGGATCGATGGACGGCGGCACCAAGGACACGGACAAGCTCCTCGTG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8095R-1.in silico 361 TTTCAATGGCTGGGCGGATCGATGGACGGCGGCACCAAGGACACGGACAAGCTCCTCGTG 419
8095R-1.IR_full 421 TGTGCTCCTCGGTTCTACGCTCCCAGTTCCCGGGACAACCACCTGCATGGAGTCTGCTAC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8095R-1.in silico 421 TGTGCTCCTCGGTTCTACGCTCCCAGTTCCCGGGACAACCACCTGCATGGAGTCTGCTAC 479
8095R-1.IR_full 481 TGGGTGAATAATACGGTGGC 499
||||||||||||||||||||
8095R-1.in silico 481 TGGGTGAATAATACGGTGGC 499
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
0 |
NM_079026.2 |
CG8095-RB, transcript variant B (scb), mRNA |
| 63.07 |
304 |
1 |
1 |
2 |
NM_166083.1 |
CG8095-RA, transcript variant A (scb), mRNA |
| 0 |
0 |
30 |
40 |
51 |
NM_137964.1 |
CG5372-RA (alphaPS5), mRNA |
| 0 |
0 |
2 |
6 |
2 |
NM_079919.2 |
CG5700-RB (prc), mRNA |
| 0 |
0 |
2 |
2 |
4 |
NM_057657.4 |
CG17158-RA (cpb), mRNA |
| 0 |
0 |
1 |
2 |
5 |
NM_169609.1 |
CG31304-RA (CG31304), mRNA |
| 0 |
0 |
0 |
5 |
4 |
NM_141673.4 |
CG31352-RA (CG31352), mRNA |
| 0 |
0 |
0 |
4 |
12 |
NM_136864.2 |
CG13185-RA (CG13185), mRNA |
| 0 |
0 |
0 |
4 |
4 |
NM_167088.1 |
CG3203-RB, transcript variant B (RpL17), mRNA |
| 0 |
0 |
0 |
4 |
4 |
NM_167089.1 |
CG3203-RC, transcript variant C (RpL17), mRNA |
| 0 |
0 |
0 |
4 |
4 |
NM_132118.2 |
CG3203-RD, transcript variant D (RpL17), mRNA |
| 0 |
0 |
0 |
4 |
4 |
NM_167087.1 |
CG3203-RA, transcript variant A (RpL17), mRNA |
| 0 |
0 |
0 |
3 |
11 |
NM_001043277.1 |
CG31163-RD, transcript variant D (CG31163), mRNA |
| 0 |
0 |
0 |
3 |
11 |
NM_169997.3 |
CG31163-RB, transcript variant B (CG31163), mRNA |
| 0 |
0 |
0 |
3 |
9 |
NM_167193.1 |
CG32702-RA (CG32702), mRNA |
| 0 |
0 |
0 |
3 |
8 |
NM_142055.1 |
CG9322-RA (CG9322), mRNA |
| 0 |
0 |
0 |
3 |
6 |
NM_206274.2 |
CG12605-RC, transcript variant C (CG12605), mRNA |
| 0 |
0 |
0 |
3 |
6 |
NM_206275.2 |
CG12605-RA, transcript variant A (CG12605), mRNA |
| 0 |
0 |
0 |
3 |
6 |
NM_139588.3 |
CG12605-RB, transcript variant B (CG12605), mRNA |
| 0 |
0 |
0 |
3 |
5 |
NM_078571.2 |
CG1705-RA (Rst(1)JH), mRNA |
| 0 |
0 |
0 |
3 |
4 |
NM_134614.1 |
CG14621-RA (CG14621), mRNA |
| 0 |
0 |
0 |
3 |
3 |
NM_169374.1 |
CG31299-RA, transcript variant A (nocturnin), mRNA |
| 0 |
0 |
0 |
3 |
3 |
NM_165305.2 |
CG10188-RA, transcript variant A (CG10188), mRNA |
| 0 |
0 |
0 |
3 |
3 |
NM_136133.2 |
CG10188-RB, transcript variant B (CG10188), mRNA |
| 0 |
0 |
0 |
3 |
3 |
NM_169375.1 |
CG31299-RB, transcript variant B (nocturnin), mRNA |
| 0 |
0 |
0 |
3 |
3 |
NM_167023.1 |
CG32770-RA (CG32770), mRNA |
| 0 |
0 |
0 |
3 |
3 |
NM_176247.1 |
CG33143-RB, transcript variant B (CG33143), mRNA |
| 0 |
0 |
0 |
3 |
3 |
NM_176246.1 |
CG33143-RC, transcript variant C (CG33143), mRNA |
| 0 |
0 |
0 |
3 |
3 |
NM_080333.2 |
CG3346-RA (pon), mRNA |
| 0 |
0 |
0 |
3 |
2 |
NM_138093.2 |
CG4681-RA (CG4681), mRNA |
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