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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 7847R-1 
 Symbol sr  Full Name stripe 
 CG No CG7847  Old CG No CG7847 
 Synonyms Sr, l(3)06948, l(3)06948b, l(3)03999, CG7847, sr 
 Accession No (Link to NCBI) NM_079671.2 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Ohhara Y, Hoshino G, Imahori K, Matsuyuki T, Yamakawa-Kobayashi K.
The Nutrient-Responsive Molecular Chaperone Hsp90 Supports Growth and Development in Drosophila.
Front Physiol (2021) 12 690564 [ PubMed ID = 34239451 ] [ RRC reference ]

Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTAGGCAGCCAACAGCATCCGT 
 Primer Seq. 3'
aatctagaggtaccTGGATGTGGTTGCACCACAGT 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 TAgGCAGCCA ACAGCATCCG TCAGCCACTT CATCCGCATC CTCATCCGCT GGAGCCACCA 
0061 GCTCGCCAGG ATTATCCGGA CAAAATCTTA ATTTAGTAGC AGGAGCAGGA GCAGCAACTA 
0121 ATTCTACGTC AGCTAACTCA CAGGATTCCC TGAATACACC CACAACTCCT TTGCTCGGAC 
0181 TCAGTCGCAA TCCGCTTCAG TTTGCACCAC CACCGGCACC ACCCATCGCG GTTCCAAGTC 
0241 CTGTAGCATC TGGACCCACA TTCGGTTACT ATCAGACAGC GAATGCTGCA CCACCACTTC 
0301 ATCATTCGCC GGCGGCAACC TCTGAAGTTA GTAACGCACC ACAACCACCG GTGGAACTGG 
0361 ATGAGTATGT AGACATACTG CAGGTTCAGC AACTTTTATT GGACTCATCG GCGGCAGCAG 
0421 CAGCGGCAGC GAATAATCCT CCGACAACCG AACAATCCGT TCAGCAGCCA CAACAAAATA 
0481 CTGTGGTGCA ACCACATCCA  
 in silico PCR Fragment
0001 TAGGCAGCCA ACAGCATCCG TCAGCCACTT CATCCGCATC CTCATCCGCT GGAGCCACCA 
0061 GCTCGCCAGG ATTATCCGGA CAAAATCTTA ATTTAGTAGC AGGAGCAGGA GCAGCAACTA 
0121 ATTCTACGTC AGCTAACTCA CAGGATTCTC TGAATACACC CACAACTCCT TTGCTCGGAC 
0181 TCAGTCGCAA TCCGCTCCAG TTTGCACCAC CACCGGCACC ACCCATCGCG GTGCCAAATC 
0241 CTGCAGCATC TGGACCCACA TTCGGTTACT ATCAGACTGT GAATGCTGCA CCACCAATTC 
0301 ATCACTCGCC GGCGGCAACC TCTGAAGTTA GTACGGCACC ACAACCGCCA GTGGAACTGG 
0361 ATGAGTATGT AGACATACTG CAGGTTCAGC AACTTTTATT GGACTCATCG GCGGCAGCAG 
0421 CAGCGGCAGC GAATAATCCT CCGACAACCG AACAATCCGT TCAGCAGCCA CAACAAAATA 
0481 CTGTGGTGCA ACCACATCCA  
 Assemble Data

7847R-1.IR_full       1   TAGGCAGCCAACAGCATCCGTCAGCCACTTCATCCGCATCCTCATCCGCTGGAGCCACCA 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7847R-1.in silico     1   TAGGCAGCCAACAGCATCCGTCAGCCACTTCATCCGCATCCTCATCCGCTGGAGCCACCA 60


7847R-1.IR_full       61  GCTCGCCAGGATTATCCGGACAAAATCTTAATTTAGTAGCAGGAGCAGGAGCAGCAACTA 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7847R-1.in silico     61  GCTCGCCAGGATTATCCGGACAAAATCTTAATTTAGTAGCAGGAGCAGGAGCAGCAACTA 120


7847R-1.IR_full       121 ATTCTACGTCAGCTAACTCACAGGATTCCCTGAATACACCCACAACTCCTTTGCTCGGAC 180
                          |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
7847R-1.in silico     121 ATTCTACGTCAGCTAACTCACAGGATTCTCTGAATACACCCACAACTCCTTTGCTCGGAC 180


7847R-1.IR_full       181 TCAGTCGCAATCCGCTTCAGTTTGCACCACCACCGGCACCACCCATCGCGGTTCCAAGTC 240
                          |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||
7847R-1.in silico     181 TCAGTCGCAATCCGCTCCAGTTTGCACCACCACCGGCACCACCCATCGCGGTGCCAAATC 240


7847R-1.IR_full       241 CTGTAGCATCTGGACCCACATTCGGTTACTATCAGACAGCGAATGCTGCACCACCACTTC 300
                          ||| ||||||||||||||||||||||||||||||||| | |||||||||||||||| |||
7847R-1.in silico     241 CTGCAGCATCTGGACCCACATTCGGTTACTATCAGACTGTGAATGCTGCACCACCAATTC 300


7847R-1.IR_full       301 ATCATTCGCCGGCGGCAACCTCTGAAGTTAGTAACGCACCACAACCACCGGTGGAACTGG 360
                          |||| ||||||||||||||||||||||||||||  ||||||||||| || ||||||||||
7847R-1.in silico     301 ATCACTCGCCGGCGGCAACCTCTGAAGTTAGTACGGCACCACAACCGCCAGTGGAACTGG 360


7847R-1.IR_full       361 ATGAGTATGTAGACATACTGCAGGTTCAGCAACTTTTATTGGACTCATCGGCGGCAGCAG 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7847R-1.in silico     361 ATGAGTATGTAGACATACTGCAGGTTCAGCAACTTTTATTGGACTCATCGGCGGCAGCAG 420


7847R-1.IR_full       421 CAGCGGCAGCGAATAATCCTCCGACAACCGAACAATCCGTTCAGCAGCCACAACAAAATA 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7847R-1.in silico     421 CAGCGGCAGCGAATAATCCTCCGACAACCGAACAATCCGTTCAGCAGCCACAACAAAATA 480


7847R-1.IR_full       481 CTGTGGTGCAACCACATCCA 500
                          ||||||||||||||||||||
7847R-1.in silico     481 CTGTGGTGCAACCACATCCA 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  40  215  NM_079671.2  CG7847-RA, transcript variant A (sr), mRNA 
0.82   30  141  NM_078514.2  CG9653-RA (brk), mRNA 
0.82   10  48  NM_080340.2  CG2302-RA (nAcRalpha-7E), mRNA 
0.82   12  NM_168544.1  CG32121-RA (CG32121), mRNA 
0.62   NM_143242.2  CG6420-RA (CG6420), mRNA 
0.41   22  NM_167395.1  CG32597-RA (l(1)G0469), mRNA 
0.41   17  NM_136527.1  CG14755-RA (CG14755), mRNA 
0.41   12  NM_001043081.1  CG11798-RD, transcript variant D (chn), mRNA 
0.41   58  NM_142817.1  CG17622-RA (CG17622), mRNA 
0.41   18  NM_080335.2  CG2984-RA (Pp2C1), mRNA 
0.2   10  15  31  NM_136732.1  CG12904-RA (CG12904), mRNA 
0.2   18  78  NM_132606.1  CG3754-RA (CG3754), mRNA 
0.2   20  98  NM_078523.2  CG2252-RB, transcript variant B (fs(1)h), mRNA 
0.2   13  NM_167144.2  CG2252-RA, transcript variant A (fs(1)h), mRNA 
0.2   13  NM_206647.1  CG2252-RC, transcript variant C (fs(1)h), mRNA 
0.2   13  NM_206646.1  CG2252-RD, transcript variant D (fs(1)h), mRNA 
0.2   11  NM_206645.1  CG2252-RE, transcript variant E (fs(1)h), mRNA 
0.2   22  68  NM_078662.2  CG5488-RA (B-H2), mRNA 
0.2   37  146  NM_176557.1  CG33106-RB, transcript variant B (mask), mRNA 
0.2   37  146  NM_176556.1  CG33106-RA, transcript variant A (mask), mRNA 
0.2   12  56  NM_132351.1  CG1343-RA, transcript variant A (Sp1), mRNA 
0.2   12  55  NM_167200.1  CG1343-RB, transcript variant B (Sp1), mRNA 
0.2   54  NM_080253.2  CG5067-RA (cic), mRNA 
0.2   14  NM_137123.2  CG17390-RA (CG17390), mRNA 
0.2   21  NM_079679.2  CG5557-RA (sqz), mRNA 
0   14  24  70  NM_166057.1  CG8787-RA, transcript variant A (Asx), mRNA 
0   14  24  70  NM_001014527.1  CG8787-RB, transcript variant B (Asx), mRNA 
0   12  32  111  NM_079996.2  CG18024-RA (SoxN), mRNA 
0   11  26  51  NM_169816.1  CG14307-RB, transcript variant B (fru), mRNA 
0   11  26  51  NM_079673.2  CG14307-RF, transcript variant F (fru), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
 
DC
 
DM
 
VM
 
VB
 
Caspase-3 signal
N
DB
 
DC
DM
 
VM
 
VB
 
Dcompartment   Penetrance
     

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