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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
7847R-1 |
Symbol |
sr |
Full Name |
stripe |
CG No |
CG7847 |
Old CG No |
CG7847 |
Synonyms |
Sr, l(3)06948, l(3)06948b, l(3)03999, CG7847, sr |
Accession No (Link to NCBI) |
NM_079671.2 |
Inserted Chr. |
ll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Ohhara Y, Hoshino G, Imahori K, Matsuyuki T, Yamakawa-Kobayashi K. The Nutrient-Responsive Molecular Chaperone Hsp90 Supports Growth and Development in Drosophila. Front Physiol (2021) 12 690564
[
PubMed ID = 34239451
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgTAGGCAGCCAACAGCATCCGT |
Primer Seq. 3' |
aatctagaggtaccTGGATGTGGTTGCACCACAGT |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 TAgGCAGCCA ACAGCATCCG TCAGCCACTT CATCCGCATC CTCATCCGCT GGAGCCACCA
0061 GCTCGCCAGG ATTATCCGGA CAAAATCTTA ATTTAGTAGC AGGAGCAGGA GCAGCAACTA
0121 ATTCTACGTC AGCTAACTCA CAGGATTCCC TGAATACACC CACAACTCCT TTGCTCGGAC
0181 TCAGTCGCAA TCCGCTTCAG TTTGCACCAC CACCGGCACC ACCCATCGCG GTTCCAAGTC
0241 CTGTAGCATC TGGACCCACA TTCGGTTACT ATCAGACAGC GAATGCTGCA CCACCACTTC
0301 ATCATTCGCC GGCGGCAACC TCTGAAGTTA GTAACGCACC ACAACCACCG GTGGAACTGG
0361 ATGAGTATGT AGACATACTG CAGGTTCAGC AACTTTTATT GGACTCATCG GCGGCAGCAG
0421 CAGCGGCAGC GAATAATCCT CCGACAACCG AACAATCCGT TCAGCAGCCA CAACAAAATA
0481 CTGTGGTGCA ACCACATCCA |
in silico PCR Fragment |
0001 TAGGCAGCCA ACAGCATCCG TCAGCCACTT CATCCGCATC CTCATCCGCT GGAGCCACCA
0061 GCTCGCCAGG ATTATCCGGA CAAAATCTTA ATTTAGTAGC AGGAGCAGGA GCAGCAACTA
0121 ATTCTACGTC AGCTAACTCA CAGGATTCTC TGAATACACC CACAACTCCT TTGCTCGGAC
0181 TCAGTCGCAA TCCGCTCCAG TTTGCACCAC CACCGGCACC ACCCATCGCG GTGCCAAATC
0241 CTGCAGCATC TGGACCCACA TTCGGTTACT ATCAGACTGT GAATGCTGCA CCACCAATTC
0301 ATCACTCGCC GGCGGCAACC TCTGAAGTTA GTACGGCACC ACAACCGCCA GTGGAACTGG
0361 ATGAGTATGT AGACATACTG CAGGTTCAGC AACTTTTATT GGACTCATCG GCGGCAGCAG
0421 CAGCGGCAGC GAATAATCCT CCGACAACCG AACAATCCGT TCAGCAGCCA CAACAAAATA
0481 CTGTGGTGCA ACCACATCCA |
Assemble Data |
7847R-1.IR_full 1 TAGGCAGCCAACAGCATCCGTCAGCCACTTCATCCGCATCCTCATCCGCTGGAGCCACCA 60
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7847R-1.in silico 1 TAGGCAGCCAACAGCATCCGTCAGCCACTTCATCCGCATCCTCATCCGCTGGAGCCACCA 60
7847R-1.IR_full 61 GCTCGCCAGGATTATCCGGACAAAATCTTAATTTAGTAGCAGGAGCAGGAGCAGCAACTA 120
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7847R-1.in silico 61 GCTCGCCAGGATTATCCGGACAAAATCTTAATTTAGTAGCAGGAGCAGGAGCAGCAACTA 120
7847R-1.IR_full 121 ATTCTACGTCAGCTAACTCACAGGATTCCCTGAATACACCCACAACTCCTTTGCTCGGAC 180
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7847R-1.in silico 121 ATTCTACGTCAGCTAACTCACAGGATTCTCTGAATACACCCACAACTCCTTTGCTCGGAC 180
7847R-1.IR_full 181 TCAGTCGCAATCCGCTTCAGTTTGCACCACCACCGGCACCACCCATCGCGGTTCCAAGTC 240
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7847R-1.in silico 181 TCAGTCGCAATCCGCTCCAGTTTGCACCACCACCGGCACCACCCATCGCGGTGCCAAATC 240
7847R-1.IR_full 241 CTGTAGCATCTGGACCCACATTCGGTTACTATCAGACAGCGAATGCTGCACCACCACTTC 300
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7847R-1.in silico 241 CTGCAGCATCTGGACCCACATTCGGTTACTATCAGACTGTGAATGCTGCACCACCAATTC 300
7847R-1.IR_full 301 ATCATTCGCCGGCGGCAACCTCTGAAGTTAGTAACGCACCACAACCACCGGTGGAACTGG 360
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7847R-1.in silico 301 ATCACTCGCCGGCGGCAACCTCTGAAGTTAGTACGGCACCACAACCGCCAGTGGAACTGG 360
7847R-1.IR_full 361 ATGAGTATGTAGACATACTGCAGGTTCAGCAACTTTTATTGGACTCATCGGCGGCAGCAG 420
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7847R-1.in silico 361 ATGAGTATGTAGACATACTGCAGGTTCAGCAACTTTTATTGGACTCATCGGCGGCAGCAG 420
7847R-1.IR_full 421 CAGCGGCAGCGAATAATCCTCCGACAACCGAACAATCCGTTCAGCAGCCACAACAAAATA 480
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7847R-1.in silico 421 CAGCGGCAGCGAATAATCCTCCGACAACCGAACAATCCGTTCAGCAGCCACAACAAAATA 480
7847R-1.IR_full 481 CTGTGGTGCAACCACATCCA 500
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7847R-1.in silico 481 CTGTGGTGCAACCACATCCA 500
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
4 |
40 |
215 |
NM_079671.2 |
CG7847-RA, transcript variant A (sr), mRNA |
0.82 |
4 |
6 |
30 |
141 |
NM_078514.2 |
CG9653-RA (brk), mRNA |
0.82 |
4 |
4 |
10 |
48 |
NM_080340.2 |
CG2302-RA (nAcRalpha-7E), mRNA |
0.82 |
4 |
2 |
2 |
12 |
NM_168544.1 |
CG32121-RA (CG32121), mRNA |
0.62 |
3 |
4 |
3 |
7 |
NM_143242.2 |
CG6420-RA (CG6420), mRNA |
0.41 |
2 |
4 |
5 |
22 |
NM_167395.1 |
CG32597-RA (l(1)G0469), mRNA |
0.41 |
2 |
3 |
4 |
17 |
NM_136527.1 |
CG14755-RA (CG14755), mRNA |
0.41 |
2 |
3 |
2 |
12 |
NM_001043081.1 |
CG11798-RD, transcript variant D (chn), mRNA |
0.41 |
2 |
2 |
6 |
58 |
NM_142817.1 |
CG17622-RA (CG17622), mRNA |
0.41 |
2 |
2 |
3 |
18 |
NM_080335.2 |
CG2984-RA (Pp2C1), mRNA |
0.2 |
1 |
10 |
15 |
31 |
NM_136732.1 |
CG12904-RA (CG12904), mRNA |
0.2 |
1 |
7 |
18 |
78 |
NM_132606.1 |
CG3754-RA (CG3754), mRNA |
0.2 |
1 |
6 |
20 |
98 |
NM_078523.2 |
CG2252-RB, transcript variant B (fs(1)h), mRNA |
0.2 |
1 |
6 |
2 |
13 |
NM_167144.2 |
CG2252-RA, transcript variant A (fs(1)h), mRNA |
0.2 |
1 |
6 |
2 |
13 |
NM_206647.1 |
CG2252-RC, transcript variant C (fs(1)h), mRNA |
0.2 |
1 |
6 |
2 |
13 |
NM_206646.1 |
CG2252-RD, transcript variant D (fs(1)h), mRNA |
0.2 |
1 |
6 |
2 |
11 |
NM_206645.1 |
CG2252-RE, transcript variant E (fs(1)h), mRNA |
0.2 |
1 |
5 |
22 |
68 |
NM_078662.2 |
CG5488-RA (B-H2), mRNA |
0.2 |
1 |
4 |
37 |
146 |
NM_176557.1 |
CG33106-RB, transcript variant B (mask), mRNA |
0.2 |
1 |
4 |
37 |
146 |
NM_176556.1 |
CG33106-RA, transcript variant A (mask), mRNA |
0.2 |
1 |
4 |
12 |
56 |
NM_132351.1 |
CG1343-RA, transcript variant A (Sp1), mRNA |
0.2 |
1 |
4 |
12 |
55 |
NM_167200.1 |
CG1343-RB, transcript variant B (Sp1), mRNA |
0.2 |
1 |
4 |
5 |
54 |
NM_080253.2 |
CG5067-RA (cic), mRNA |
0.2 |
1 |
4 |
3 |
14 |
NM_137123.2 |
CG17390-RA (CG17390), mRNA |
0.2 |
1 |
2 |
2 |
21 |
NM_079679.2 |
CG5557-RA (sqz), mRNA |
0 |
0 |
14 |
24 |
70 |
NM_166057.1 |
CG8787-RA, transcript variant A (Asx), mRNA |
0 |
0 |
14 |
24 |
70 |
NM_001014527.1 |
CG8787-RB, transcript variant B (Asx), mRNA |
0 |
0 |
12 |
32 |
111 |
NM_079996.2 |
CG18024-RA (SoxN), mRNA |
0 |
0 |
11 |
26 |
51 |
NM_169816.1 |
CG14307-RB, transcript variant B (fru), mRNA |
0 |
0 |
11 |
26 |
51 |
NM_079673.2 |
CG14307-RF, transcript variant F (fru), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
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