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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
7644R-2 |
Symbol |
beat-Ib |
Full Name |
beaten path Ib |
CG No |
CG7644 |
Old CG No |
CG7644 |
Synonyms |
beat-B, beat Ib, CT23325, BG:DS00365.4, CG7644, BcDNA:RE51929, beat-Ib |
Accession No (Link to NCBI) |
NM_078855.2 |
Inserted Chr. |
lll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
Map Viewer |
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Reference
[Please submit your publication]
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Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
Saj A, Arziman Z, Stempfle D, van Belle W, Sauder U, Horn T, Dürrenberger M, Paro R, Boutros M, Merdes G. A combined ex vivo and in vivo RNAi screen for notch regulators in Drosophila reveals an extensive notch interaction network. Dev Cell (2010) 18(5) 862-76
[
PubMed ID = 20493818
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgAGTTTGCCAGGTCTCACTGTT |
Primer Seq. 3' |
aatctagaggtaccGGTGGCACCTGTATGTCATTG |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 AGTTTGCCAG GTCTCACTGT TGGGCTGCGG AACGTCAACG TTCGCATACC GTCCGCCGTT
0061 AAGCGTGGCG ATAATGCGCT CTTAATCTGC AATTATGACA TCGAGAACGA CACGCTCTAC
0121 ACGGTGAAAT GGTATCGTGG CAGACGGGAG TTCTACCGCT ATACGCCCAA GGAAAATCCG
0181 GCCTGGAAGA TATTCACCAA AACGAACGAA ATCGATGTCG AGACTGCCCA ATCGAATGCC
0241 AGCCACGTTC TTTTGCGAAA TGTTCCCACC TCAATATCGG GCAAATTTGC CTGCGAAGTG
0301 TCCGCAGATG CACCCACCTT CGATACTTCC ATCGTGGCCG CCGACATGGA GGTGGTTGAA
0361 TTGCCCACCC AACGACCCAT AATTACTGGC ATCCATTCAA GATACCGTCT GGGGGACGTT
0421 ATAAATGGGA ACTGCTCATC GGATTACTCC AAGCCGGCTG CGAATCTCAC CTGGTGGATC
0481 AATGACATAC AGGTGCCACC |
in silico PCR Fragment |
0001 AGTTTGCCAG GTCTCACTGT TGGGCTGCGG AACGTCAACG TTCGCATACC GTCCGCCGTT
0061 AAGCGTGGCG ATAATGCGCT CTTAATCTGC AATTATGACA TCGAGAACGA CACGCTCTAC
0121 ACGGTGAAAT GGTATCGTGG CAGACGGGAG TTCTACCGCT ATACGCCCAA GGAAAATCCG
0181 GCCTGGAAGA TATTCACCAA AACGAACGAA ATCGATGTCG AGACTGCCCA ATCGAATGCC
0241 AGCCACGTTC TTTTGCGAAA TGTTCCCACC TCAATATCGG GCAAATTTGC CTGCGAAGTG
0301 TCCGCAGATG CACCCACCTT CGATACTTCC ATCGTGGCCG CCGACATGGA GGTGGTTGAA
0361 TTGCCCACCC AACGACCCAT AATTACTGGC ATCCATTCAA GATACCGTCT GGGGGACGTT
0421 ATAAATGGGA ACTGCTCATC GGATTACTCC AAGCCGGCTG CGAATCTCAC CTGGTGGATC
0481 AATGACATAC AGGTGCCACC |
Assemble Data |
7644R-2.IR_full 1 AGTTTGCCAGGTCTCACTGTTGGGCTGCGGAACGTCAACGTTCGCATACCGTCCGCCGTT 60
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7644R-2.in silico 1 AGTTTGCCAGGTCTCACTGTTGGGCTGCGGAACGTCAACGTTCGCATACCGTCCGCCGTT 60
7644R-2.IR_full 61 AAGCGTGGCGATAATGCGCTCTTAATCTGCAATTATGACATCGAGAACGACACGCTCTAC 120
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7644R-2.in silico 61 AAGCGTGGCGATAATGCGCTCTTAATCTGCAATTATGACATCGAGAACGACACGCTCTAC 120
7644R-2.IR_full 121 ACGGTGAAATGGTATCGTGGCAGACGGGAGTTCTACCGCTATACGCCCAAGGAAAATCCG 180
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7644R-2.in silico 121 ACGGTGAAATGGTATCGTGGCAGACGGGAGTTCTACCGCTATACGCCCAAGGAAAATCCG 180
7644R-2.IR_full 181 GCCTGGAAGATATTCACCAAAACGAACGAAATCGATGTCGAGACTGCCCAATCGAATGCC 240
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7644R-2.in silico 181 GCCTGGAAGATATTCACCAAAACGAACGAAATCGATGTCGAGACTGCCCAATCGAATGCC 240
7644R-2.IR_full 241 AGCCACGTTCTTTTGCGAAATGTTCCCACCTCAATATCGGGCAAATTTGCCTGCGAAGTG 300
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7644R-2.in silico 241 AGCCACGTTCTTTTGCGAAATGTTCCCACCTCAATATCGGGCAAATTTGCCTGCGAAGTG 300
7644R-2.IR_full 301 TCCGCAGATGCACCCACCTTCGATACTTCCATCGTGGCCGCCGACATGGAGGTGGTTGAA 360
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7644R-2.in silico 301 TCCGCAGATGCACCCACCTTCGATACTTCCATCGTGGCCGCCGACATGGAGGTGGTTGAA 360
7644R-2.IR_full 361 TTGCCCACCCAACGACCCATAATTACTGGCATCCATTCAAGATACCGTCTGGGGGACGTT 420
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7644R-2.in silico 361 TTGCCCACCCAACGACCCATAATTACTGGCATCCATTCAAGATACCGTCTGGGGGACGTT 420
7644R-2.IR_full 421 ATAAATGGGAACTGCTCATCGGATTACTCCAAGCCGGCTGCGAATCTCACCTGGTGGATC 480
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7644R-2.in silico 421 ATAAATGGGAACTGCTCATCGGATTACTCCAAGCCGGCTGCGAATCTCACCTGGTGGATC 480
7644R-2.IR_full 481 AATGACATACAGGTGCCACC 500
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7644R-2.in silico 481 AATGACATACAGGTGCCACC 500
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
0 |
NM_078855.2 |
CG7644-RA (beat-Ib), mRNA |
0 |
0 |
10 |
15 |
19 |
NM_078856.2 |
CG4838-RA (beat-Ic), mRNA |
0 |
0 |
4 |
5 |
15 |
NM_079660.3 |
CG14334-RA (beat-IIa), mRNA |
0 |
0 |
2 |
3 |
3 |
NM_079072.2 |
CG12501-RA (Or56a), mRNA |
0 |
0 |
1 |
4 |
6 |
NM_166523.1 |
CG5819-RB, transcript variant B (CG5819), mRNA |
0 |
0 |
1 |
4 |
6 |
NM_137816.1 |
CG5819-RA, transcript variant A (CG5819), mRNA |
0 |
0 |
1 |
4 |
5 |
NM_168753.1 |
CG5535-RB, transcript variant B (CG5535), mRNA |
0 |
0 |
1 |
4 |
5 |
NM_140762.1 |
CG5535-RA, transcript variant A (CG5535), mRNA |
0 |
0 |
1 |
3 |
5 |
NM_078606.3 |
CG6146-RA, transcript variant A (Top1), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_167435.2 |
CG6146-RB, transcript variant B (Top1), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_001014742.1 |
CG6146-RC, transcript variant C (Top1), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_132245.1 |
CG1387-RA (CG1387), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_168601.1 |
CG3297-RC, transcript variant C (mnd), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_168600.1 |
CG3297-RB, transcript variant B (mnd), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_079350.4 |
CG3297-RA, transcript variant A (mnd), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_165975.1 |
CG4712-RA, transcript variant A (CG4712), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_137012.1 |
CG4712-RB, transcript variant B (CG4712), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_141312.2 |
CG1245-RA (MED27), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_142629.2 |
CG4335-RA (CG4335), mRNA |
0 |
0 |
0 |
7 |
2 |
NM_132724.2 |
CG1810-RA (mRNA-capping-enzyme), mRNA |
0 |
0 |
0 |
5 |
6 |
NM_170450.1 |
CG31036-RA (CG31036), mRNA |
0 |
0 |
0 |
5 |
2 |
NM_080004.2 |
CG31036-RA (CG31036), mRNA, ankyrin repeat, tyrosine kinase CG18247-RA (shark), mRNA |
0 |
0 |
0 |
4 |
11 |
NM_135986.2 |
CG15138-RB, transcript variant B (beat-IIIc), mRNA |
0 |
0 |
0 |
4 |
11 |
NM_165209.1 |
CG15138-RA, transcript variant A (beat-IIIc), mRNA |
0 |
0 |
0 |
4 |
11 |
NM_058160.3 |
CG4846-RA (beat-Ia), mRNA |
0 |
0 |
0 |
4 |
5 |
NM_176057.1 |
CG33179-RA (beat-IIIb), mRNA |
0 |
0 |
0 |
4 |
4 |
NM_132056.3 |
CG4790-RA (fs(1)M3), mRNA |
0 |
0 |
0 |
4 |
2 |
NM_057753.3 |
CG3283-RA (SdhB), mRNA |
0 |
0 |
0 |
4 |
2 |
NM_057857.4 |
CG8749-RA (snRNP70K), mRNA |
0 |
0 |
0 |
4 |
2 |
NM_138264.1 |
CG9173-RA (CG9173), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
N |
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DB |
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+ |
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DC |
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++ |
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DM |
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+ |
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VM |
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+ |
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VB |
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