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Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
7399R-3 |
| Symbol |
Hn |
Full Name |
Henna |
| CG No |
CG7399 |
Old CG No |
CG7399 |
| Synonyms |
DTPH, TPH, Tph, PAH, Pah, pah, bu, CG7399, Hn |
| Accession No (Link to NCBI) |
NM_079239.3 |
| Inserted Chr. |
lll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
| Map Viewer |
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Reference
[Please submit your publication]
|
Leitão-Gonçalves R, Carvalho-Santos Z, Francisco AP, Fioreze GT, Anjos M, Baltazar C, Elias AP, Itskov PM, Piper MDW, Ribeiro C.
Commensal bacteria and essential amino acids control food choice behavior and reproduction.
PLoS Biol (2017) 15(4) e2000862
[
PubMed ID = 28441450
]
[
RRC reference
]
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| Comment |
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| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgTTTTCGCCCAAGGATTCGTCG |
| Primer Seq. 3' |
aatctagaggtaccCAGGCATGTGTCTTATACAGC |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 TTTTCGCCCA AGGATTCGTC GTTGTCCAGC GGAGCTTTGG CCAACATTTT GGCCATCTTC
0061 AAGAAGCATG ACATAAACCT GGTGCATATT GAGTCGCGTT CCTCGCTGCG TGTTCCCGGT
0121 TATGAGTTTT TCGTGGAGGC CGATGGAAAA TCGGGAGCCT TGGGAAAAGC CATCGAGGAT
0181 GTGAAGGAGC AGTGTAGCTA CTTTAACATC ATTTCGCGTG ACTACAAGGA TAATGCCACG
0241 GCNTGTGCCC TGGTTNCCCG CGGCGTATAC GCGATCTGGA TCGTTTCGCC AATCAGATTC
0301 TGAGCTACGG ATCGGAGCTG GATGCCGATC ATCCTGGTTT TACCGATCCG GAATACCGCA
0361 AGCGTCGCAA GTACTTCGCC GACATTGCCT ACAACTACAA GCATGGCGAG CCCTTGCCCC
0421 ATGTGGATTA CACCAAGGAG GAGATCGAGA CCTGGGGCAT TATCTTCAGG AATCTTACGA
0481 AGCTGTATAA GACACATGCC TG |
| in silico PCR Fragment |
0001 TTTTCGCCCA AGGATTCGTC GTTGTCCAGC GGAGCTTTGG CCAACATTTT GGCCATCTTC
0061 AAGAAGCATG ACATAAACCT GGTGCATATT GAGTCGCGTT CCTCGCTGCG TGTTCCCGGT
0121 TATGAGTTTT TCGTGGAGGC CGATGGAAAA TCGGGAGCCT TGGGAAAAGC CATCGAGGAT
0181 GTGAAGGAGC AGTGTAGCTA CTTTAACATC ATTTCGCGTG ACTACAAGGA TAATGCCACG
0241 GC-TGTGCCC TGGTT-CCCG CGGCGTATAC GCGATCTGGA TCGTTTCGCC AATCAGATTC
0301 TGAGCTACGG ATCGGAGCTG GATGCCGATC ATCCTGGTTT TACCGATCCG GAATACCGCA
0361 AGCGTCGCAA GTACTTCGCC GACATTGCCT ACAACTACAA GCATGGCGAG CCCTTGCCCC
0421 ATGTGGATTA CACCAAGGAG GAGATCGAGA CCTGGGGCAT TATCTTCAGG AATCTTACGA
0481 AGCTGTATAA GACACATGCC TG |
| Assemble Data |
7399R-3.IR_full 1 TTTTCGCCCAAGGATTCGTCGTTGTCCAGCGGAGCTTTGGCCAACATTTTGGCCATCTTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7399R-3.in silico 1 TTTTCGCCCAAGGATTCGTCGTTGTCCAGCGGAGCTTTGGCCAACATTTTGGCCATCTTC 60
7399R-3.IR_full 61 AAGAAGCATGACATAAACCTGGTGCATATTGAGTCGCGTTCCTCGCTGCGTGTTCCCGGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7399R-3.in silico 61 AAGAAGCATGACATAAACCTGGTGCATATTGAGTCGCGTTCCTCGCTGCGTGTTCCCGGT 120
7399R-3.IR_full 121 TATGAGTTTTTCGTGGAGGCCGATGGAAAATCGGGAGCCTTGGGAAAAGCCATCGAGGAT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7399R-3.in silico 121 TATGAGTTTTTCGTGGAGGCCGATGGAAAATCGGGAGCCTTGGGAAAAGCCATCGAGGAT 180
7399R-3.IR_full 181 GTGAAGGAGCAGTGTAGCTACTTTAACATCATTTCGCGTGACTACAAGGATAATGCCACG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7399R-3.in silico 181 GTGAAGGAGCAGTGTAGCTACTTTAACATCATTTCGCGTGACTACAAGGATAATGCCACG 240
7399R-3.IR_full 241 GCNTGTGCCCTGGTTNCCCGCGGCGTATACGCGATCTGGATCGTTTCGCCAATCAGATTC 300
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
7399R-3.in silico 241 GC-TGTGCCCTGGTT-CCCGCGGCGTATACGCGATCTGGATCGTTTCGCCAATCAGATTC 300
7399R-3.IR_full 301 TGAGCTACGGATCGGAGCTGGATGCCGATCATCCTGGTTTTACCGATCCGGAATACCGCA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7399R-3.in silico 301 TGAGCTACGGATCGGAGCTGGATGCCGATCATCCTGGTTTTACCGATCCGGAATACCGCA 360
7399R-3.IR_full 361 AGCGTCGCAAGTACTTCGCCGACATTGCCTACAACTACAAGCATGGCGAGCCCTTGCCCC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7399R-3.in silico 361 AGCGTCGCAAGTACTTCGCCGACATTGCCTACAACTACAAGCATGGCGAGCCCTTGCCCC 420
7399R-3.IR_full 421 ATGTGGATTACACCAAGGAGGAGATCGAGACCTGGGGCATTATCTTCAGGAATCTTACGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7399R-3.in silico 421 ATGTGGATTACACCAAGGAGGAGATCGAGACCTGGGGCATTATCTTCAGGAATCTTACGA 480
7399R-3.IR_full 481 AGCTGTATAAGACACATGCCTG 502
||||||||||||||||||||||
7399R-3.in silico 481 AGCTGTATAAGACACATGCCTG 502
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
2 |
NM_079239.3 |
CG7399-RA, transcript variant A (Hn), mRNA |
| 100 |
482 |
0 |
0 |
2 |
NM_001014573.1 |
CG7399-RB, transcript variant B (Hn), mRNA |
| 0 |
0 |
3 |
3 |
3 |
NM_141805.1 |
CG5207-RA (scpr-A), mRNA |
| 0 |
0 |
3 |
2 |
9 |
NM_132335.2 |
CG12139-RB (CG12139), mRNA |
| 0 |
0 |
2 |
6 |
4 |
NM_001014571.1 |
CG33556-RA (form3), mRNA |
| 0 |
0 |
2 |
4 |
4 |
NM_168869.1 |
CG4268-RC, transcript variant C (Pitslre), mRNA |
| 0 |
0 |
2 |
4 |
4 |
NM_140994.2 |
CG4268-RA, transcript variant A (Pitslre), mRNA |
| 0 |
0 |
2 |
4 |
3 |
NM_170355.2 |
CG12877-RB, transcript variant B (CG12877), mRNA |
| 0 |
0 |
2 |
4 |
3 |
NM_143327.2 |
CG12877-RA, transcript variant A (CG12877), mRNA |
| 0 |
0 |
2 |
4 |
3 |
NM_001038984.1 |
CG12877-RC, transcript variant C (CG12877), mRNA |
| 0 |
0 |
2 |
3 |
8 |
NM_176462.1 |
CG31116-RD, transcript variant D (CG31116), mRNA |
| 0 |
0 |
2 |
3 |
8 |
NM_169432.2 |
CG31116-RA, transcript variant A (CG31116), mRNA |
| 0 |
0 |
2 |
3 |
8 |
NM_169431.2 |
CG31116-RC, transcript variant C (CG31116), mRNA |
| 0 |
0 |
2 |
2 |
2 |
NM_137402.2 |
CG4966-RA, transcript variant A (CG4966), mRNA |
| 0 |
0 |
2 |
2 |
2 |
NM_166245.1 |
CG4966-RB, transcript variant B (CG4966), mRNA |
| 0 |
0 |
1 |
5 |
4 |
NM_057550.3 |
CG10118-RB, transcript variant B (ple), mRNA |
| 0 |
0 |
1 |
5 |
4 |
NM_057549.2 |
CG10118-RA, transcript variant A (ple), mRNA |
| 0 |
0 |
1 |
5 |
2 |
NM_143497.2 |
CG7896-RA (CG7896), mRNA |
| 0 |
0 |
1 |
4 |
10 |
NM_001043070.1 |
CG34146-RA (brp), mRNA |
| 0 |
0 |
1 |
4 |
7 |
NM_167001.1 |
CG4944-RA, transcript variant A (cib), mRNA |
| 0 |
0 |
1 |
4 |
7 |
NM_080326.4 |
CG4944-RB, transcript variant B (cib), mRNA |
| 0 |
0 |
1 |
4 |
2 |
NM_134869.2 |
CG2964-RA (CG2964), mRNA |
| 0 |
0 |
1 |
4 |
2 |
NM_167002.1 |
CG4944-RC, transcript variant C (cib), mRNA |
| 0 |
0 |
1 |
3 |
9 |
NM_206091.1 |
CG7734-RD, transcript variant D (shn), mRNA |
| 0 |
0 |
1 |
3 |
8 |
NM_057375.3 |
CG7734-RA, transcript variant A (shn), mRNA |
| 0 |
0 |
1 |
3 |
8 |
NM_134279.2 |
CG7734-RB, transcript variant B (shn), mRNA |
| 0 |
0 |
1 |
3 |
8 |
NM_057376.2 |
CG7734-RC, transcript variant C (shn), mRNA |
| 0 |
0 |
1 |
3 |
6 |
NM_001043147.1 |
CG32178-RB, transcript variant B (Msi), mRNA |
| 0 |
0 |
1 |
3 |
6 |
NM_080281.3 |
CG32178-RA, transcript variant A (Msi), mRNA |
| 0 |
0 |
1 |
3 |
6 |
NM_001043148.1 |
CG32178-RC, transcript variant C (Msi), mRNA |
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