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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
7356R-1 |
Symbol |
CG7356 |
Full Name |
CG7356 |
CG No |
CG7356 |
Old CG No |
CG7356 |
Synonyms |
CG7356 |
Accession No (Link to NCBI) |
NM_135330.1 |
Inserted Chr. |
lll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Maki K, Shibata T, Kawabata SI. Transglutaminase-catalyzed incorporation of polyamines masks the DNA-binding region of the transcription factor Relish. J Biol Chem (2017) 292(15) 6369-6380
[
PubMed ID = 28258224
]
[
RRC reference
]
Álvarez-Fernández C, Tamirisa S, Prada F, Chernomoretz A, Podhajcer O, Blanco E, Martín-Blanco E. Identification and functional analysis of healing regulators in Drosophila. PLoS Genet (2015) 11(2) e1004965
[
PubMed ID = 25647511
]
[
RRC reference
]
Sekihara S, Shibata T, Hyakkendani M, Kawabata SI. RNA Interference Directed against the Transglutaminase Gene Triggers Dysbiosis of Gut Microbiota in Drosophila. J Biol Chem (2016) 291(48) 25077-25087
[
PubMed ID = 27760824
]
[
RRC reference
]
Shibata T, Maki K, Hadano J, Fujikawa T, Kitazaki K, Koshiba T, Kawabata S. Crosslinking of a Peritrophic Matrix Protein Protects Gut Epithelia from Bacterial Exotoxins. PLoS Pathog (2015) 11(10) e1005244
[
PubMed ID = 26506243
]
[
RRC reference
]
Min B, Kwon YC, Choe KM, Chung KC. PINK1 phosphorylates transglutaminase 2 and blocks its proteasomal degradation. J Neurosci Res (2015) 93(5) 722-35
[
PubMed ID = 25557247
]
[
RRC reference
]
Shibata T, Sekihara S, Fujikawa T, Miyaji R, Maki K, Ishihara T, Koshiba T, Kawabata S. Transglutaminase-catalyzed protein-protein cross-linking suppresses the activity of the NF-κB-like transcription factor relish. Sci Signal (2013) 6(285) ra61
[
PubMed ID = 23882120
]
[
RRC reference
]
Lesch C, Jo J, Wu Y, Fish GS, Galko MJ. A targeted UAS-RNAi screen in Drosophila larvae identifies wound closure genes regulating distinct cellular processes. Genetics (2010) 186(3) 943-57
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PubMed ID = 20813879
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
Shibata T, Ariki S, Shinzawa N, Miyaji R, Suyama H, Sako M, Inomata N, Koshiba T, Kanuka H, Kawabata S. Protein crosslinking by transglutaminase controls cuticle morphogenesis in Drosophila. PLoS One (2010) 5(10) e13477
[
PubMed ID = 20976106
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgGGCATTCCACAAGGCGACAAA |
Primer Seq. 3' |
aatctagaggtaccTCCGGACACCAGGGATTAAAG |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 GGNATTCCAC AAGGCGACAA AACAGATGGC GCCAGCTCAN GCAGTATTGG GCGTTTTTAA
0061 GGTCGATCTG TGCCTGGAGG ACAATCCATG AGGAGCACCA TACGAGTCCA CTTCTATGCG
0121 GCAGCTGCCA AGGAAGCGTT GGTCGTGCGA CGAGGAGAAC CCTTCCGGCT GAAGATCCAC
0181 TTCAATCGAG ACTACAGTCC CAGCAAGGAT GCCATCAGTT TCATTTTCAC AGTAGCGGAT
0241 GACACCAAGC CGAGTCCCGG TCATGGAACA CTCAATGCCC TGGTGCCGCA CGATGGCATC
0301 GATTATCTGG GCGACACTTT GGAATGGGGA GCCGGCATCG AATCGCATGA GGGTCAAACG
0361 CTTACGGTGC TAATCAAGCC ACCATCCACC TGTCCCGTAA CGGAATGGAA ACTGGACATC
0421 GACACGAAGC TGCTGGGAGA TGGATCGCGA AGCTANTCCC CTGCCGTTGC CCATCTATGT
0481 ACTCTTTAAT CCCTGGTGTC CGGA |
in silico PCR Fragment |
0001 GGCATTCCAC AAGGCGACAA AACAGATGGC GCCAGCTCA- GCAGTATTGG GCGTTTTGAA
0061 GGTCGATCTG TGCCTGGAGG ACAA-CCATG AGGAGCACCA TACGAGT-CA CTTCTATGCG
0121 GCAGCTGCCA AGGAAGCGTT GGTCGTGCGA CGAGGAGAAC CCTTCCGGCT GAAGATCCAC
0181 TTCAATCGAG ACTACAGTCC CAGCAAGGAT GCCATCAGTT TCATTTTCAC AGTAGCGGAT
0241 GACACCAAGC CGAGTCCCGG TCATGGAACA CTCAATGCCC TGGTGCCGCA CGATGGCATC
0301 GATTATCTGG GCGACACTTT GGAATGGGGA GCCGGCATCG AATCGCATGA GGGTCAAACG
0361 CTTACGGTGC TAATCAAGCC ACCATCCACC TGTCCCGTAA CGGAATGGAA ACTGGACATC
0421 GACACGAAGC TGCTGGGCGA TGGATCGCGA AGCTA-TCCC CTGCCGTTGC CCATCTATGT
0481 ACTCTTTAAT CCCTGGTGTC CGGA |
Assemble Data |
7356R-1.IR_full 1 GGNATTCCACAAGGCGACAAAACAGATGGCGCCAGCTCANGCAGTATTGGGCGTTTTTAA 60
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
7356R-1.in silico 1 GGCATTCCACAAGGCGACAAAACAGATGGCGCCAGCTCA-GCAGTATTGGGCGTTTTGAA 60
7356R-1.IR_full 61 GGTCGATCTGTGCCTGGAGGACAATCCATGAGGAGCACCATACGAGTCCACTTCTATGCG 120
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
7356R-1.in silico 61 GGTCGATCTGTGCCTGGAGGACAA-CCATGAGGAGCACCATACGAGT-CACTTCTATGCG 120
7356R-1.IR_full 121 GCAGCTGCCAAGGAAGCGTTGGTCGTGCGACGAGGAGAACCCTTCCGGCTGAAGATCCAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7356R-1.in silico 121 GCAGCTGCCAAGGAAGCGTTGGTCGTGCGACGAGGAGAACCCTTCCGGCTGAAGATCCAC 180
7356R-1.IR_full 181 TTCAATCGAGACTACAGTCCCAGCAAGGATGCCATCAGTTTCATTTTCACAGTAGCGGAT 240
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7356R-1.in silico 181 TTCAATCGAGACTACAGTCCCAGCAAGGATGCCATCAGTTTCATTTTCACAGTAGCGGAT 240
7356R-1.IR_full 241 GACACCAAGCCGAGTCCCGGTCATGGAACACTCAATGCCCTGGTGCCGCACGATGGCATC 300
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7356R-1.in silico 241 GACACCAAGCCGAGTCCCGGTCATGGAACACTCAATGCCCTGGTGCCGCACGATGGCATC 300
7356R-1.IR_full 301 GATTATCTGGGCGACACTTTGGAATGGGGAGCCGGCATCGAATCGCATGAGGGTCAAACG 360
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7356R-1.in silico 301 GATTATCTGGGCGACACTTTGGAATGGGGAGCCGGCATCGAATCGCATGAGGGTCAAACG 360
7356R-1.IR_full 361 CTTACGGTGCTAATCAAGCCACCATCCACCTGTCCCGTAACGGAATGGAAACTGGACATC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7356R-1.in silico 361 CTTACGGTGCTAATCAAGCCACCATCCACCTGTCCCGTAACGGAATGGAAACTGGACATC 420
7356R-1.IR_full 421 GACACGAAGCTGCTGGGAGATGGATCGCGAAGCTANTCCCCTGCCGTTGCCCATCTATGT 480
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
7356R-1.in silico 421 GACACGAAGCTGCTGGGCGATGGATCGCGAAGCTA-TCCCCTGCCGTTGCCCATCTATGT 480
7356R-1.IR_full 481 ACTCTTTAATCCCTGGTGTCCGGA 504
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7356R-1.in silico 481 ACTCTTTAATCCCTGGTGTCCGGA 504
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
0 |
NM_135330.1 |
CG7356-RA, transcript variant A (CG7356), mRNA |
95.22 |
459 |
1 |
1 |
1 |
NM_164778.1 |
CG7356-RB, transcript variant B (CG7356), mRNA |
0 |
0 |
5 |
5 |
3 |
NM_169501.1 |
CG8644-RA (Osi22), mRNA |
0 |
0 |
3 |
3 |
4 |
NM_079275.2 |
CG4463-RA (Hsp23), mRNA |
0 |
0 |
2 |
2 |
3 |
NM_132684.1 |
CG11158-RA (CG11158), mRNA |
0 |
0 |
1 |
8 |
5 |
NM_132412.1 |
CG9817-RA (CG9817), mRNA |
0 |
0 |
1 |
4 |
4 |
NM_142954.3 |
CG6057-RA (SMC1), mRNA |
0 |
0 |
1 |
2 |
9 |
NM_080365.2 |
CG4894-RB, transcript variant B (Ca-alpha1D), mRNA |
0 |
0 |
1 |
2 |
9 |
NM_165146.1 |
CG4894-RC, transcript variant C (Ca-alpha1D), mRNA |
0 |
0 |
1 |
2 |
9 |
NM_134429.2 |
CG4894-RA, transcript variant A (Ca-alpha1D), mRNA |
0 |
0 |
1 |
2 |
9 |
NM_165147.1 |
CG4894-RD, transcript variant D (Ca-alpha1D), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_079768.2 |
CG6238-RA, transcript variant A (ssh), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_170184.1 |
CG6238-RB, transcript variant B (ssh), mRNA |
0 |
0 |
0 |
6 |
5 |
NM_165664.1 |
CG8026-RA, transcript variant A (CG8026), mRNA |
0 |
0 |
0 |
6 |
5 |
NM_136624.2 |
CG8026-RB, transcript variant B (CG8026), mRNA |
0 |
0 |
0 |
5 |
13 |
NM_206502.1 |
CG3937-RD, transcript variant D (cher), mRNA |
0 |
0 |
0 |
5 |
12 |
NM_079659.2 |
CG3937-RA, transcript variant A (cher), mRNA |
0 |
0 |
0 |
5 |
11 |
NM_169746.1 |
CG3937-RB, transcript variant B (cher), mRNA |
0 |
0 |
0 |
5 |
11 |
NM_169747.1 |
CG3937-RC, transcript variant C (cher), mRNA |
0 |
0 |
0 |
5 |
4 |
NM_057358.3 |
CG3180-RA (RpII140), mRNA |
0 |
0 |
0 |
4 |
8 |
NM_078670.2 |
CG7092-RA (Dhc16F), mRNA |
0 |
0 |
0 |
4 |
6 |
NM_080025.1 |
CG11387-RA, transcript variant A (ct), mRNA |
0 |
0 |
0 |
4 |
6 |
NM_132438.1 |
CG11203-RA (CG11203), mRNA |
0 |
0 |
0 |
4 |
4 |
NM_137259.2 |
CG15707-RA (CG15707), mRNA |
0 |
0 |
0 |
4 |
2 |
NM_139612.1 |
CG1308-RA (CG1308), mRNA |
0 |
0 |
0 |
3 |
8 |
NM_142538.1 |
CG5237-RA (CG5237), mRNA |
0 |
0 |
0 |
3 |
8 |
NM_175960.3 |
CG33196-RB (dp), mRNA |
0 |
0 |
0 |
3 |
6 |
NM_140125.1 |
CG6640-RA, transcript variant A (CG6640), mRNA |
0 |
0 |
0 |
3 |
4 |
NM_142283.2 |
CG17565-RA (CG17565), mRNA |
0 |
0 |
0 |
3 |
4 |
NM_143191.2 |
CG14546-RA (CG14546), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
N |
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DB |
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+- |
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DC |
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+- |
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DM |
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+- |
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VM |
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VB |
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Caspase-3 signal
N |
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+ |
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DB |
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+ |
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DC |
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++ |
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DM |
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+ |
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VM |
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+ |
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VB |
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+ |
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Dcompartment |
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Penetrance |
+ |
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