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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 7274R-3 
 Symbol CG34422  Full Name
 CG No CG34422  Old CG No CG7274 
 Synonyms FBgn0085451, CG7274, CG7282, CG34422 
 Accession No (Link to NCBI) NM_133102.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD.
Zyxin links fat signaling to the hippo pathway.
PLoS Biol (2011) 9(6) e1000624 [ PubMed ID = 21666802 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGTACAAGGGCGCCTTCTGCGA 
 Primer Seq. 3'
aatctagaggtaccTGGACTCCGTCTCCACGCACA 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 GTACAAGGGC GCCTTCTGCG AGGCGAAGGT CAGCAAGGTG GTGCGCAATA TCAAGGTGAA 
0061 GGTGGCCTAC AAGCAGGGCC TAGGCTCCGG CATTGTCTCC GATGATGCCA TCAAAGCGCC 
0121 AACGGGCCAA CTGCGCGTCG GTGCGGTTGT GGAGGTGCGT CATCCAGATC GCAAGGAACT 
0181 CGTGGAGGCT ACCATTACGA AGATCCAGGA TTGTTCGCAG TACACGGTGG TCTTCGACGA 
0241 TGGAGACATC ACCACGCTCA GGCGAACGGC TCTGTGCCTC AAGAGCGGCA GGCATTTTAA 
0301 CGAGAGCGAG ACGCTAGACC AGCTGCCACT CACCCATCCG GAGCACTTTG GCAATCCCGT 
0361 GGTGGGTGGT CGAAGGGGCA GACGGCGTGG TCACCTGAAC GAGGATAGTT CCGAGGACGA 
0421 CGACGAAAGC GATGCCAAGG AAGTGGTGAA CGAGAAGGAG GAGAACATCG GCAAGGTGGT 
0481 GTGCGTGGAG ACGGAGTCCA  
 in silico PCR Fragment
0001 GTACAAGGGC GCCTTCTGCG AGGCGAAGGT CAGCAAGGTG GTGCGCAATA TCAAGGTGAA 
0061 GGTGGCCTAC AAGCAGGGCC TAGGCTCCGG CATTGTCTCC GATGATGCCA TCAAAGCGCC 
0121 AACGGGCCAA CTGCGCGTCG GTGCGGTTGT GGAGGTGCGT CATCCAGATC GCAAGGAACT 
0181 CGTGGAGGCT ACCATTACGA AGATCCAGGA TTGTTCGCAG TACACGGTGG TCTTCGACGA 
0241 TGGAGACATC ACCACGCTCA GGCGAACGGC TCTGTGCCTC AAGAGCGGCA GGCATTTTAA 
0301 CGAGAGCGAG ACGCTAGACC AGCTGCCACT CACCCATCCG GAGCACTTTG GCAATCCCGT 
0361 GGTGGGTGGT CGAAGGGGCA GACGGCGTGG TCACCTGAAC GAGGATAGTT CCGAGGACGA 
0421 CGACGAAAGC GATGCCAAGG AAGTGGTGAA CGAGAAGGAG GAGAACATCG GCAAGGTGGT 
0481 GTGCGTGGAG ACGGAGTCCA  
 Assemble Data

7274R-3.IR_full       1   GTACAAGGGCGCCTTCTGCGAGGCGAAGGTCAGCAAGGTGGTGCGCAATATCAAGGTGAA 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7274R-3.in silico     1   GTACAAGGGCGCCTTCTGCGAGGCGAAGGTCAGCAAGGTGGTGCGCAATATCAAGGTGAA 60


7274R-3.IR_full       61  GGTGGCCTACAAGCAGGGCCTAGGCTCCGGCATTGTCTCCGATGATGCCATCAAAGCGCC 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7274R-3.in silico     61  GGTGGCCTACAAGCAGGGCCTAGGCTCCGGCATTGTCTCCGATGATGCCATCAAAGCGCC 120


7274R-3.IR_full       121 AACGGGCCAACTGCGCGTCGGTGCGGTTGTGGAGGTGCGTCATCCAGATCGCAAGGAACT 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7274R-3.in silico     121 AACGGGCCAACTGCGCGTCGGTGCGGTTGTGGAGGTGCGTCATCCAGATCGCAAGGAACT 180


7274R-3.IR_full       181 CGTGGAGGCTACCATTACGAAGATCCAGGATTGTTCGCAGTACACGGTGGTCTTCGACGA 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7274R-3.in silico     181 CGTGGAGGCTACCATTACGAAGATCCAGGATTGTTCGCAGTACACGGTGGTCTTCGACGA 240


7274R-3.IR_full       241 TGGAGACATCACCACGCTCAGGCGAACGGCTCTGTGCCTCAAGAGCGGCAGGCATTTTAA 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7274R-3.in silico     241 TGGAGACATCACCACGCTCAGGCGAACGGCTCTGTGCCTCAAGAGCGGCAGGCATTTTAA 300


7274R-3.IR_full       301 CGAGAGCGAGACGCTAGACCAGCTGCCACTCACCCATCCGGAGCACTTTGGCAATCCCGT 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7274R-3.in silico     301 CGAGAGCGAGACGCTAGACCAGCTGCCACTCACCCATCCGGAGCACTTTGGCAATCCCGT 360


7274R-3.IR_full       361 GGTGGGTGGTCGAAGGGGCAGACGGCGTGGTCACCTGAACGAGGATAGTTCCGAGGACGA 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7274R-3.in silico     361 GGTGGGTGGTCGAAGGGGCAGACGGCGTGGTCACCTGAACGAGGATAGTTCCGAGGACGA 420


7274R-3.IR_full       421 CGACGAAAGCGATGCCAAGGAAGTGGTGAACGAGAAGGAGGAGAACATCGGCAAGGTGGT 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7274R-3.in silico     421 CGACGAAAGCGATGCCAAGGAAGTGGTGAACGAGAAGGAGGAGAACATCGGCAAGGTGGT 480


7274R-3.IR_full       481 GTGCGTGGAGACGGAGTCCA 500
                          ||||||||||||||||||||
7274R-3.in silico     481 GTGCGTGGAGACGGAGTCCA 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_133102.1  CG7274-RA (CG7274), mRNA 
0   NM_141240.1  CG14656-RA (CG14656), mRNA 
0   NM_078506.2  CG12217-RA (PpV), mRNA 
0   NM_167037.1  CG4165-RD, transcript variant D (CG4165), mRNA 
0   NM_131992.2  CG4165-RA, transcript variant A (CG4165), mRNA 
0   NM_167036.1  CG4165-RC, transcript variant C (CG4165), mRNA 
0   NM_167035.1  CG4165-RB, transcript variant B (CG4165), mRNA 
0   NM_080358.2  CG1484-RA (fliI), mRNA 
0   NM_078824.2  CG4881-RA, transcript variant A (salr), mRNA 
0   NM_164965.1  CG4881-RB, transcript variant B (salr), mRNA 
0   NM_134532.2  CG9581-RA (CG9581), mRNA 
0   NM_079745.2  CG5289-RA (Pros26.4), mRNA 
0   NM_139425.1  CG5691-RA (CG5691), mRNA 
0   NM_176121.1  CG33183-RC, transcript variant C (Hr46), mRNA 
0   NM_137110.2  CG8617-RA (CG8617), mRNA 
0   NM_135662.3  CG4970-RA, transcript variant A (CG4970), mRNA 
0   NM_135663.2  CG14929-RA, transcript variant A (CG14929), mRNA 
0   NM_057338.2  CG8246-RA (Poxn), mRNA 
0   NM_166274.1  CG5729-RA, transcript variant A (Dgp-1), mRNA 
0   NM_137458.2  CG5729-RB, transcript variant B (Dgp-1), mRNA 
0   NM_144343.2  CG8250-RA (Alk), mRNA 
0   NM_164934.1  CG7400-RB, transcript variant B (Fatp), mRNA 
0   NM_079984.2  CG7400-RA, transcript variant A (Fatp), mRNA 
0   NM_137718.2  CG9480-RA, transcript variant A (Glycogenin), mRNA 
0   NM_132539.2  CG1559-RA (Upf1), mRNA 
0   NM_170398.1  CG14516-RA, transcript variant A (CG14516), mRNA 
0   NM_079086.2  CG5821-RA (qkr58E-2), mRNA 
0   NM_143417.2  CG14516-RB, transcript variant B (CG14516), mRNA 
0   NM_135690.2  CG6746-RA (CG6746), mRNA 
0   NM_176729.1  CG14414-RC, transcript variant C (CG14414), mRNA 

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