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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 7227R-1 
 Symbol CG7227  Full Name CG7227 
 CG No CG7227  Old CG No CG7227 
 Synonyms CG7227 
 Accession No (Link to NCBI) NM_135325.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees male lethal 
 Map Viewer
 Reference
[Please submit your publication]
Xu C, Franklin B, Tang HW, Regimbald-Dumas Y, Hu Y, Ramos J, Bosch JA, Villalta C, He X, Perrimon N.
An in vivo RNAi screen uncovers the role of AdoR signaling and adenosine deaminase in controlling intestinal stem cell activity.
Proc Natl Acad Sci U S A (2020) 117(1) 464-471 [ PubMed ID = 31852821 ] [ RRC reference ]

Umetsu D, Dunst S, Dahmann C.
An RNA interference screen for genes required to shape the anteroposterior compartment boundary in Drosophila identifies the Eph receptor.
PLoS One (2014) 9(12) e114340 [ PubMed ID = 25473846 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCCGTGCTCTATATGGAGCAAA 
 Primer Seq. 3'
aatctagaggtaccGCTCATCTTGATCATCGGCGT 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CNGTGCTCTA TATGGAGCAA ATCGAACGCT GGATGCTCGA GTGGTTCATG GTGCTCCGGC 
0061 CAGGAACAAT GATCAGCAGC CTGTGGCAGT CACCGGCCAT GGACATAAAC GTTGATCTGT 
0121 ACATATTCAA CTGGACAAAC TCGGAGAAGT TCAGTGATCC CACAGTGAAG CCCAGGTTCG 
0181 AGGAGCTTGG TCCGTATCGC TTCACCGAAC GGATGCAGAA GGTCAATGTG GAGTGGCACG 
0241 ATGAGAACTC GACGGTTTCC TATCGACGTC GCAGTCGATT CGATTTCGAT CCGAAACTTA 
0301 GTGTCGGACG TCCTACAGAT CCCATTGTGG CGCCCAACCT GCTCATTGTG GGACTGTACC 
0361 AGAAGATGGT CATGTGGAGT CCCATGCTGC GTTCCCTCAT GCTCTTGGCC CTGAATATCT 
0421 ACGGCAAGGA GCAGGCCATG ATACGGCCAG CCAGCGATTG GATGTTCGAC GGCTTCGACA 
0481 CGCCGATGAT CAAGATGAGC  
 in silico PCR Fragment
0001 CCGTGCTCTA TATGGAGCAA ATCGAACGCT GGATGCTGGA GTGGTTCATG GTGCTCCGCC 
0061 CAGGAACAAT GATCAGCAGC CTGTGGCAGT CACCGGCCAT GGACATAAAC GTTGACCTGT 
0121 ACATATTCAA CTGGACGAAC TCGGAGAAGT TCAGTGATCC CACAGTGAAG CCCAGGTTCG 
0181 AGGAGCTTGG TCCGTATCGC TTCACCGAAC GGATGCAGAA GGTCAATGTG GAGTGGCACG 
0241 ATGAGAACTC GACGGTTTCC TATCGACGTC GCAGTCGATT CGATTTCGAT CCGAAACTTA 
0301 GTGTCGGACG TCCTACAGAT CCCATTGTGG CGCCCAACCT GCTCATTGTG GGACTGTACC 
0361 AGAAGATGGT CATGTGGAGT CCCATGCTGC GTTCCCTCAT GCTCTTGGCC CTGAATATCT 
0421 ACGGCAAGGA GCAGGCCATG ATACGGCCAG CCAGCGATTG GATGTTCGAC GGCTTCGACA 
0481 CGCCGATGAT CAAGATGAGC  
 Assemble Data

7227R-1.IR_full       1   CNGTGCTCTATATGGAGCAAATCGAACGCTGGATGCTCGAGTGGTTCATGGTGCTCCGGC 60
                          | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
7227R-1.in silico     1   CCGTGCTCTATATGGAGCAAATCGAACGCTGGATGCTGGAGTGGTTCATGGTGCTCCGCC 60


7227R-1.IR_full       61  CAGGAACAATGATCAGCAGCCTGTGGCAGTCACCGGCCATGGACATAAACGTTGATCTGT 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
7227R-1.in silico     61  CAGGAACAATGATCAGCAGCCTGTGGCAGTCACCGGCCATGGACATAAACGTTGACCTGT 120


7227R-1.IR_full       121 ACATATTCAACTGGACAAACTCGGAGAAGTTCAGTGATCCCACAGTGAAGCCCAGGTTCG 180
                          |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
7227R-1.in silico     121 ACATATTCAACTGGACGAACTCGGAGAAGTTCAGTGATCCCACAGTGAAGCCCAGGTTCG 180


7227R-1.IR_full       181 AGGAGCTTGGTCCGTATCGCTTCACCGAACGGATGCAGAAGGTCAATGTGGAGTGGCACG 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7227R-1.in silico     181 AGGAGCTTGGTCCGTATCGCTTCACCGAACGGATGCAGAAGGTCAATGTGGAGTGGCACG 240


7227R-1.IR_full       241 ATGAGAACTCGACGGTTTCCTATCGACGTCGCAGTCGATTCGATTTCGATCCGAAACTTA 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7227R-1.in silico     241 ATGAGAACTCGACGGTTTCCTATCGACGTCGCAGTCGATTCGATTTCGATCCGAAACTTA 300


7227R-1.IR_full       301 GTGTCGGACGTCCTACAGATCCCATTGTGGCGCCCAACCTGCTCATTGTGGGACTGTACC 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7227R-1.in silico     301 GTGTCGGACGTCCTACAGATCCCATTGTGGCGCCCAACCTGCTCATTGTGGGACTGTACC 360


7227R-1.IR_full       361 AGAAGATGGTCATGTGGAGTCCCATGCTGCGTTCCCTCATGCTCTTGGCCCTGAATATCT 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7227R-1.in silico     361 AGAAGATGGTCATGTGGAGTCCCATGCTGCGTTCCCTCATGCTCTTGGCCCTGAATATCT 420


7227R-1.IR_full       421 ACGGCAAGGAGCAGGCCATGATACGGCCAGCCAGCGATTGGATGTTCGACGGCTTCGACA 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7227R-1.in silico     421 ACGGCAAGGAGCAGGCCATGATACGGCCAGCCAGCGATTGGATGTTCGACGGCTTCGACA 480


7227R-1.IR_full       481 CGCCGATGATCAAGATGAGC 500
                          ||||||||||||||||||||
7227R-1.in silico     481 CGCCGATGATCAAGATGAGC 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_135325.2  CG7227-RA (CG7227), mRNA 
0   NM_139858.2  CG8564-RA (CG8564), mRNA 
0   NM_057357.2  CG1569-RA (rod), mRNA 
0   NM_080215.2  CG18525-RA, transcript variant A (Spn5), mRNA 
0   NM_176501.1  CG18525-RB, transcript variant B (Spn5), mRNA 
0   NM_141447.2  CG14609-RA (CG14609), mRNA 
0   NM_142359.2  CG31256-RA (Brf), mRNA 
0   NM_079248.2  CG7108-RA (DNApol-alpha50), mRNA 
0   NM_001014724.1  CG6986-RC, transcript variant C (CG6986), mRNA 
0   NM_001014723.1  CG6986-RD, transcript variant D (CG6986), mRNA 
0   NM_131955.1  CG6986-RA, transcript variant A (CG6986), mRNA 
0   NM_167020.1  CG6986-RB, transcript variant B (CG6986), mRNA 
0   11  NM_142563.1  CG16718-RA, transcript variant A (CG16718), mRNA 
0   NM_079543.2  CG1257-RA (alpha-Est3), mRNA 
0   NM_136928.3  CG8502-RA, transcript variant A (CG8502), mRNA 
0   NM_165892.2  CG8502-RC, transcript variant C (CG8502), mRNA 
0   NM_142691.1  CG5798-RA (CG5798), mRNA 
0   NM_134976.1  CG15425-RA (CG15425), mRNA 
0   NM_205944.1  CG33298-RB, transcript variant B (CG33298), mRNA 
0   NM_205943.1  CG33298-RA, transcript variant A (CG33298), mRNA 
0   NM_141500.1  CG2767-RA (CG2767), mRNA 
0   NM_136250.2  CG9247-RA (CG9247), mRNA 
0   NM_169867.1  CG16718-RB, transcript variant B (CG16718), mRNA 
0   NM_079940.4  CG16973-RA, transcript variant A (msn), mRNA 
0   NM_139680.1  CG17150-RA, transcript variant A (CG17150), mRNA 
0   NM_143521.1  CG1359-RA (CG1359), mRNA 
0   NM_136577.1  CG30349-RA (CG30349), mRNA 
0   NM_142350.1  CG11896-RA (CG11896), mRNA 
0   NM_164751.1  CG5973-RB, transcript variant B (CG5973), mRNA 
0   NM_135276.2  CG5973-RC, transcript variant C (CG5973), mRNA 

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