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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 7069R-2 
 Symbol CG7069  Full Name CG7069 
 CG No CG7069  Old CG No CG7069 
 Synonyms CG7069 
 Accession No (Link to NCBI) NM_142773.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Park J, Lee J, Kim JH, Lee J, Park H, Lim C.
ZNF598 co-translationally titrates poly(GR) protein implicated in the pathogenesis of C9ORF72-associated ALS/FTD.
Nucleic Acids Res (2021) 49(19) 11294-11311 [ PubMed ID = 34551427 ] [ RRC reference ]

Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD.
Zyxin links fat signaling to the hippo pathway.
PLoS Biol (2011) 9(6) e1000624 [ PubMed ID = 21666802 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTCTCACGGCTCTCACGAGTAT 
 Primer Seq. 3'
aatctagaggtaccGCGAAGATCATGTCCACCTTT 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 TCTCACgGCT CTCACGAGTA TCACTGCCAG ACAATACAGG CGGCTCGTAA GGCCATCGCC 
0061 ATGTACGTGG AGCAAACGGG TCTGCCCAGA ACATTGGCAA TTGCTCTGGA CACCAAGGGT 
0121 CCGGAGATCC GGACGGGCAA ACTGGCCGGT GGCAATGATA GGGCTGAGAT AGAGCTCAAG 
0181 ACCGGAGACA AAGTGACATT GAGCACCAAG AAGGAGATGG CAGACAAGAG CACCAAGGAT 
0241 AATATCTATG TGGATTATCA GAGGCTACCT CAACTGGTCA AACCAGGAAA TCGGGTATTT 
0301 GTAGACGACG GATTGATTGC ATTGATCGTG AAGGAATCAA AGGGAGATGA AGTGATCTGT 
0361 CAGGTGGAGA ACGGTGGCAA GCTGGGCTCC CACAAGGGAA TCAATTTGCC AGGAGTTCCG 
0421 GTAGATCTTC CCAGCGTAAC GGAGAAGGAT AAGCAGGATC TTAAATTTGG GGCCGAGCAA 
0481 AAGGTGGACA TGATCTTCGC  
 in silico PCR Fragment
0001 TCTCACGGCT CTCACGAGTA TCACTGCCAG ACAATACAGG CGGCTCGTAA GGCCATCGCC 
0061 ATGTACGTGG AGCAAACGGG TCTGCCCAGA ACATTGGCAA TTGCTCTGGA CACCAAGGGT 
0121 CCAGAGATCC GGACGGGCAA ACTGGCCGGT GGCAATGATA GGGCTGAGAT AGAGCTCAAG 
0181 ACCGGAGACA AAGTGACATT GAGCACCAAG AAGGAGATGG CAGACAAGAG TAACAAGGAT 
0241 AATATCTATG TGGATTATCA GAGGCTACCT CAACTGGTCA AACCAGGAAA TCGGGTATTT 
0301 GTAGACGACG GATTGATTGC ATTGATCGTG AAGGAATCAA AGGGAGATGA AGTGATCTGT 
0361 CAGGTGGAGA ACGGTGGCAA GCTGGGCTCC CACAAGGGAA TCAATTTGCC AGGAGTTCCG 
0421 GTAGATCTTC CCAGCGTAAC GGAGAAGGAT AAGCAGGATC TTAAATTTGG GGCCGAGCAA 
0481 AAGGTGGACA TGATCTTCGC  
 Assemble Data

7069R-2.IR_full       1   TCTCACGGCTCTCACGAGTATCACTGCCAGACAATACAGGCGGCTCGTAAGGCCATCGCC 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7069R-2.in silico     1   TCTCACGGCTCTCACGAGTATCACTGCCAGACAATACAGGCGGCTCGTAAGGCCATCGCC 60


7069R-2.IR_full       61  ATGTACGTGGAGCAAACGGGTCTGCCCAGAACATTGGCAATTGCTCTGGACACCAAGGGT 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7069R-2.in silico     61  ATGTACGTGGAGCAAACGGGTCTGCCCAGAACATTGGCAATTGCTCTGGACACCAAGGGT 120


7069R-2.IR_full       121 CCGGAGATCCGGACGGGCAAACTGGCCGGTGGCAATGATAGGGCTGAGATAGAGCTCAAG 180
                          || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7069R-2.in silico     121 CCAGAGATCCGGACGGGCAAACTGGCCGGTGGCAATGATAGGGCTGAGATAGAGCTCAAG 180


7069R-2.IR_full       181 ACCGGAGACAAAGTGACATTGAGCACCAAGAAGGAGATGGCAGACAAGAGCACCAAGGAT 240
                          |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
7069R-2.in silico     181 ACCGGAGACAAAGTGACATTGAGCACCAAGAAGGAGATGGCAGACAAGAGTAACAAGGAT 240


7069R-2.IR_full       241 AATATCTATGTGGATTATCAGAGGCTACCTCAACTGGTCAAACCAGGAAATCGGGTATTT 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7069R-2.in silico     241 AATATCTATGTGGATTATCAGAGGCTACCTCAACTGGTCAAACCAGGAAATCGGGTATTT 300


7069R-2.IR_full       301 GTAGACGACGGATTGATTGCATTGATCGTGAAGGAATCAAAGGGAGATGAAGTGATCTGT 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7069R-2.in silico     301 GTAGACGACGGATTGATTGCATTGATCGTGAAGGAATCAAAGGGAGATGAAGTGATCTGT 360


7069R-2.IR_full       361 CAGGTGGAGAACGGTGGCAAGCTGGGCTCCCACAAGGGAATCAATTTGCCAGGAGTTCCG 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7069R-2.in silico     361 CAGGTGGAGAACGGTGGCAAGCTGGGCTCCCACAAGGGAATCAATTTGCCAGGAGTTCCG 420


7069R-2.IR_full       421 GTAGATCTTCCCAGCGTAACGGAGAAGGATAAGCAGGATCTTAAATTTGGGGCCGAGCAA 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7069R-2.in silico     421 GTAGATCTTCCCAGCGTAACGGAGAAGGATAAGCAGGATCTTAAATTTGGGGCCGAGCAA 480


7069R-2.IR_full       481 AAGGTGGACATGATCTTCGC 500
                          ||||||||||||||||||||
7069R-2.in silico     481 AAGGTGGACATGATCTTCGC 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_142773.1  CG7069-RA (CG7069), mRNA 
0.2   NM_078712.2  CG12794-RA (lcs), mRNA 
0   22  23  36  NM_142131.1  CG7362-RA (CG7362), mRNA 
0   NM_143598.1  CG15564-RA (CG15564), mRNA 
0   19  26  NM_079724.2  CG7070-RA, transcript variant A (PyK), mRNA 
0   19  26  NM_170004.1  CG7070-RB, transcript variant B (PyK), mRNA 
0   NM_166962.1  CG32498-RC, transcript variant C (dnc), mRNA 
0   NM_166964.1  CG32498-RD, transcript variant D (dnc), mRNA 
0   NM_166963.1  CG32498-RK, transcript variant K (dnc), mRNA 
0   NM_166965.1  CG32498-RJ, transcript variant J (dnc), mRNA 
0   NM_166961.1  CG32498-RI, transcript variant I (dnc), mRNA 
0   NM_142762.2  CG7080-RA (CG7080), mRNA 
0   NM_143504.2  CG7912-RA (CG7912), mRNA 
0   NM_133149.2  CG8051-RA (CG8051), mRNA 
0   NM_140821.2  CG3819-RA (CG3819), mRNA 
0   NM_132773.2  CG5627-RA (rab3-GEF), mRNA 
0   NM_164966.2  CG6464-RA (salm), mRNA 
0   NM_164354.1  CG31973-RB, transcript variant B (CG31973), mRNA 
0   NM_057849.3  CG3733-RA (Chd1), mRNA 
0   NM_164353.1  CG31973-RA, transcript variant A (CG31973), mRNA 
0   NM_001042861.1  CG31973-RC, transcript variant C (CG31973), mRNA 
0   NM_131930.1  CG15572-RA (CG15572), mRNA 
0   23  NM_175960.3  CG33196-RB (dp), mRNA 
0   NM_140314.2  CG10698-RA (GRHRII), mRNA 
0   NM_057269.2  CG10236-RA (LanA), mRNA 
0   NM_144372.1  CG13270-RA (Ugt36Ba), mRNA 
0   NM_079764.2  CG6875-RA (asp), mRNA 
0   NM_143195.1  CG14541-RA (CG14541), mRNA 
0   NM_139475.1  CG16986-RA (CG16986), mRNA 
0   NM_139532.1  CG14967-RA (CG14967), mRNA 

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