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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 7055R-3 
 Symbol dalao  Full Name dalao 
 CG No CG7055  Old CG No CG7055 
 Synonyms BAP111, BAF57, CG7055, Bap111, unnamed, clone 1.83, anon-EST:Liang-1.83, dalao 
 Accession No (Link to NCBI) NM_132302.3 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Liu Y, Ge Q, Chan B, Liu H, Singh SR, Manley J, Lee J, Weideman AM, Hou G, Hou SX.
Whole-animal genome-wide RNAi screen identifies networks regulating male germline stem cells in Drosophila.
Nat Commun (2016) 7 12149 [ PubMed ID = 27484291 ] [ RRC reference ]

Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCCCTGCCAAGCAACTACAAGC 
 Primer Seq. 3'
aatctagaggtaccGGCCGACATGTAGGCCTGATA 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CCCTNGCCAA GCAACTACAA GCAGATaGCC GTTGGCGGCC AGGGATCGGC CACACCACTC 
0061 NAGGGCGGCG GCGGTCNGCT CNGGCGGCGG CAGCCGNTCN CGTTCATCCG NCGGCGNNGG 
0121 TGNTGGCGAT CGCAACAAGG ATCAGACGCC CATCTTCACG CACAGCAACT ATGGGAATCC 
0181 GGCATTCACG CCACAGAAGG TGACCAAGTC GTCGAGCAGC AAGAACCAGA ACGAATCAAG 
0241 GCTACCCAAG CCACCAAAGC CGCCGGAGAA GCCCATTTTG CCCTACATGC GGTATTCGAA 
0301 ACGCGTCTGG GATAGCGTCA AGGCGAAGCA TCCAGAGCTG AAGCTGTGGG AGCTGGGTAA 
0361 GAAGATCGGT GCCATGTGGA AGTTGCTGCC CGAGGATGAG AAGACGGAGT TCATTGACGA 
0421 ATACGAGGCG GAGAAGCTGG AGTACGAGAA ATCGCTAAAG GCCTACCACC AGACGCCCgC 
0481 CTATCAGGCC TANATNTNGG CC 
 in silico PCR Fragment
0001 CCCT-GCCAA GCAACTACAA GCAGATAGCC GTTGGCGGCC AGGGATCGGC CACACCACTC 
0061 CAGGGCGGCG GCGGT-GGCT CCGGCGGCGG CAGCCGGTCG CGTTCATCCG GCGGCGGAGG 
0121 TGGTGGCGAT CGCAACAAGG ATCAGACGCC CATCTTCACG CACAGCAACT ATGGGAATCC 
0181 GGCATTCACG CCACAGAAGG TAACCAAGTC GTCGAGCAGC AAGAACCAGA ACGAATCAAG 
0241 GCTACCCAAG CCACCAAAGC CGCCGGAGAA GCCCATTTTG CCCTACATGC GGTATTCGAA 
0301 ACGCGTCTGG GATAGCGTCA AGGCGAAGCA TCCAGAGCTG AAGCTGTGGG AGCTGGGTAA 
0361 GAAGATCGGT GCCATGTGGA AGTTGCTGCC CGAGGATGAG AAGACGGAGT TCATTGACGA 
0421 ATACGAGGCG GAGAAGCTGG AGTACGAGAA ATCGCTAAAG GCCTACCACC AGACGCCCGC 
0481 CTATCAGGCC TACATGTCGG CC 
 Assemble Data

7055R-3.IR_full       1   CCCTNGCCAAGCAACTACAAGCAGATAGCCGTTGGCGGCCAGGGATCGGCCACACCACTC 60
                          |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
7055R-3.in silico     1   CCCT-GCCAAGCAACTACAAGCAGATAGCCGTTGGCGGCCAGGGATCGGCCACACCACTC 60


7055R-3.IR_full        61  AGGGCGGCGGCGGTCNGCTCNGGCGGCGGCAGCCGNTCNCGTTCATCCGNCGGCGNNGG 119
                           ||||||||||||||  |||| |||||||||||||| || |||||||||| |||||  ||
7055R-3.in silico      61  AGGGCGGCGGCGGT-GGCTCCGGCGGCGGCAGCCGGTCGCGTTCATCCGGCGGCGGAGG 119


7055R-3.IR_full       121 TGNTGGCGATCGCAACAAGGATCAGACGCCCATCTTCACGCACAGCAACTATGGGAATCC 179
                          || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7055R-3.in silico     121 TGGTGGCGATCGCAACAAGGATCAGACGCCCATCTTCACGCACAGCAACTATGGGAATCC 179


7055R-3.IR_full       181 GGCATTCACGCCACAGAAGGTGACCAAGTCGTCGAGCAGCAAGAACCAGAACGAATCAAG 239
                          ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
7055R-3.in silico     181 GGCATTCACGCCACAGAAGGTAACCAAGTCGTCGAGCAGCAAGAACCAGAACGAATCAAG 239


7055R-3.IR_full       241 GCTACCCAAGCCACCAAAGCCGCCGGAGAAGCCCATTTTGCCCTACATGCGGTATTCGAA 299
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7055R-3.in silico     241 GCTACCCAAGCCACCAAAGCCGCCGGAGAAGCCCATTTTGCCCTACATGCGGTATTCGAA 299


7055R-3.IR_full       301 ACGCGTCTGGGATAGCGTCAAGGCGAAGCATCCAGAGCTGAAGCTGTGGGAGCTGGGTAA 359
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7055R-3.in silico     301 ACGCGTCTGGGATAGCGTCAAGGCGAAGCATCCAGAGCTGAAGCTGTGGGAGCTGGGTAA 359


7055R-3.IR_full       361 GAAGATCGGTGCCATGTGGAAGTTGCTGCCCGAGGATGAGAAGACGGAGTTCATTGACGA 419
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7055R-3.in silico     361 GAAGATCGGTGCCATGTGGAAGTTGCTGCCCGAGGATGAGAAGACGGAGTTCATTGACGA 419


7055R-3.IR_full       421 ATACGAGGCGGAGAAGCTGGAGTACGAGAAATCGCTAAAGGCCTACCACCAGACGCCCGC 479
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7055R-3.in silico     421 ATACGAGGCGGAGAAGCTGGAGTACGAGAAATCGCTAAAGGCCTACCACCAGACGCCCGC 479


7055R-3.IR_full       481 CTATCAGGCCTANATNTNGGCC 501
                          |||||||||||| || | ||||
7055R-3.in silico     481 CTATCAGGCCTACATGTCGGCC 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  13  NM_132302.3  CG7055-RA (dalao), mRNA 
0.41   15  NM_140925.2  CG7323-RA (CG7323), mRNA 
0.41   NM_132535.2  CG1844-RA (SelG), mRNA 
0.2   11  NM_140917.1  CG14186-RA (CG14186), mRNA 
0.2   NM_057829.3  CG8075-RA (Vang), mRNA 
0.2   NM_142397.1  CG14318-RA (CG14318), mRNA 
0   26  69  NM_143742.2  CG5812-RA (GCR(ich)), mRNA 
0   NM_168575.1  CG32138-RA, transcript variant A (CG32138), mRNA 
0   NM_168576.1  CG32138-RB, transcript variant B (CG32138), mRNA 
0   31  67  NM_078641.2  CG3606-RB, transcript variant B (caz), mRNA 
0   31  67  NM_167493.1  CG3606-RA, transcript variant A (caz), mRNA 
0   13  NM_167581.2  CG7826-RA, transcript variant A (mnb), mRNA 
0   NM_168382.1  CG6721-RB, transcript variant B (Gap1), mRNA 
0   NM_079290.2  CG6721-RA, transcript variant A (Gap1), mRNA 
0   NM_057632.3  CG10072-RA (sgl), mRNA 
0   NM_080124.3  CG31695-RA (scw), mRNA 
0   NM_140776.2  CG13699-RA (CG13699), mRNA 
0   NM_135288.2  CG18585-RA (CG18585), mRNA 
0   NM_169381.1  CG17184-RB, transcript variant B (CG17184), mRNA 
0   NM_141801.1  CG17184-RA, transcript variant A (CG17184), mRNA 
0   73  171  NM_168226.1  CG32377-RA (CG32377), mRNA 
0   19  NM_133014.2  CG6269-RA (unc-4), mRNA 
0   18  NM_135957.2  CG31738-RB, transcript variant B (CG31738), mRNA 
0   14  NM_057516.3  CG5403-RA, transcript variant A (retn), mRNA 
0   14  NM_176254.1  CG5403-RB, transcript variant B (retn), mRNA 
0   18  NM_136634.2  CG1975-RA (Rep2), mRNA 
0   15  NM_206362.1  CG9425-RB, transcript variant B (CG9425), mRNA 
0   15  NM_140468.2  CG9425-RA, transcript variant A (CG9425), mRNA 
0   NM_170420.1  CG18741-RA, transcript variant A (DopR2), mRNA 
0   NM_079824.2  CG18741-RB, transcript variant B (DopR2), mRNA 

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