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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 7048R-1 
 Symbol CG7048  Full Name CG7048 
 CG No CG7048  Old CG No CG7048 
 Synonyms CG7048 
 Accession No (Link to NCBI) NM_142796.2 
 Inserted Chr. ll 
 Insertional Mutation  lethal 
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCACCCGCCAAGTCCGAGATGA 
 Primer Seq. 3'
aatctagaggtaccTAACCGCCGGCTGCGATTGCT 
 Predicted Fragment Size
474 
 IR fragment full Seq
0001 CACCCGCCAA GTCCGAGATG ATCGACCTGA CCAAGTTGAG TCCGGAACAG CTGATTCAGA 
0061 TCAAGCAGGA GTTCGAGCAG GAGATTACCA ACGTACAGGA CTCGCTGTCG ACGCTTCACG 
0121 GCTGTCAAGC CAAGTACGCC GGATCCAAGG AGGCGCTGGG AACCTTTCAA CCCAATTGGG 
0181 AGAACCGTCA GATCCTGGTG CCCCTGACCA GCAGTATGTA TGTGCCAGGA CGGGTCAAGG 
0241 ATCTCAACAG GTTCGTCATA GACATCGGCA CCGGCNTACT ACATTGAAAA GGATCTGGAA 
0301 GGCTCCAAAG ACTACTTCNA GCGACGCGTG GAGTACGTGC AGGAGCAGAT CGAGAAAATC 
0361 GAAAAGATCC ACCTGCAAAA GACGCGCTTC TATAACTCAG TGATGAGTGT GCTGGAGATG 
0421 AAGCAGGCTg CTGCAGCGAA ATTGCAGTCG CAGCAGCAAT CgNANCCgGC GGTTA 
 in silico PCR Fragment
0001 CACCCGCCAA GTCCGAGATG ATCGACCTGA CCAAGTTGAG TCCGGAACAG CTGATTCAGA 
0061 TCAAGCAGGA GTTCGAGCAG GAGATTACCA ACGTACAGGA CTCGCTGTCG ACGCTTCACG 
0121 GCTGTCAAGC CAAGTACGCC GGATCCAAGG AGGCGCTGGG AACCTTTCAA CCCAATTGGG 
0181 AGAACCGTCA GATCCTGGTG CCCCTGACCA GCAGTATGTA TGTGCCAGGA CGGGTCAAGG 
0241 ATCTCAACAG GTTCGTCATA GACATCGGCA CCGGC-TACT ACATTGAAAA GGATCTGGAA 
0301 GGCTCCAAAG ACTACTTCAA GCGACGCGTG GAGTACGTGC AGGAGCAGAT CGAGAAAATC 
0361 GAAAAGATCC ACCTGCAAAA GACGCGCTTC TATAACTCAG TGATGAGTGT GCTGGAGATG 
0421 AAGCAGGCTG CTGCAGCGAA ATTGCAGTCG CAGCAGCAAT CGCAGCCGGC GGTTA 
 Assemble Data

7048R-1.IR_full       1   CACCCGCCAAGTCCGAGATGATCGACCTGACCAAGTTGAGTCCGGAACAGCTGATTCAGA 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7048R-1.in silico     1   CACCCGCCAAGTCCGAGATGATCGACCTGACCAAGTTGAGTCCGGAACAGCTGATTCAGA 60


7048R-1.IR_full       61  TCAAGCAGGAGTTCGAGCAGGAGATTACCAACGTACAGGACTCGCTGTCGACGCTTCACG 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7048R-1.in silico     61  TCAAGCAGGAGTTCGAGCAGGAGATTACCAACGTACAGGACTCGCTGTCGACGCTTCACG 120


7048R-1.IR_full       121 GCTGTCAAGCCAAGTACGCCGGATCCAAGGAGGCGCTGGGAACCTTTCAACCCAATTGGG 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7048R-1.in silico     121 GCTGTCAAGCCAAGTACGCCGGATCCAAGGAGGCGCTGGGAACCTTTCAACCCAATTGGG 180


7048R-1.IR_full       181 AGAACCGTCAGATCCTGGTGCCCCTGACCAGCAGTATGTATGTGCCAGGACGGGTCAAGG 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7048R-1.in silico     181 AGAACCGTCAGATCCTGGTGCCCCTGACCAGCAGTATGTATGTGCCAGGACGGGTCAAGG 240


7048R-1.IR_full       241 ATCTCAACAGGTTCGTCATAGACATCGGCACCGGCNTACTACATTGAAAAGGATCTGGAA 300
                          ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
7048R-1.in silico     241 ATCTCAACAGGTTCGTCATAGACATCGGCACCGGC-TACTACATTGAAAAGGATCTGGAA 300


7048R-1.IR_full       301 GGCTCCAAAGACTACTTCNAGCGACGCGTGGAGTACGTGCAGGAGCAGATCGAGAAAATC 360
                          |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
7048R-1.in silico     301 GGCTCCAAAGACTACTTCAAGCGACGCGTGGAGTACGTGCAGGAGCAGATCGAGAAAATC 360


7048R-1.IR_full       361 GAAAAGATCCACCTGCAAAAGACGCGCTTCTATAACTCAGTGATGAGTGTGCTGGAGATG 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7048R-1.in silico     361 GAAAAGATCCACCTGCAAAAGACGCGCTTCTATAACTCAGTGATGAGTGTGCTGGAGATG 420


7048R-1.IR_full       421 AAGCAGGCTGCTGCAGCGAAATTGCAGTCGCAGCAGCAATCGNANCCGGCGGTTA 475
                          |||||||||||||||||||||||||||||||||||||||||| | ||||||||||
7048R-1.in silico     421 AAGCAGGCTGCTGCAGCGAAATTGCAGTCGCAGCAGCAATCGCAGCCGGCGGTTA 475

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   456  NM_142796.2  CG7048-RA (CG7048), mRNA 
0.21   NM_134926.2  CG3304-RA, transcript variant A (CG3304), mRNA 
0.21   NM_205901.1  CG3304-RC, transcript variant C (CG3304), mRNA 
0.21   NM_205902.1  CG3304-RB, transcript variant B (CG3304), mRNA 
0   NM_142819.1  CG6954-RA (CG6954), mRNA 
0   NM_176143.1  CG2368-RH, transcript variant H (psq), mRNA 
0   NM_165791.1  CG2368-RD, transcript variant D (psq), mRNA 
0   NM_001014519.1  CG2368-RJ, transcript variant J (psq), mRNA 
0   NM_165792.1  CG2368-RE, transcript variant E (psq), mRNA 
0   NM_176142.1  CG2368-RG, transcript variant G (psq), mRNA 
0   NM_176141.1  CG2368-RF, transcript variant F (psq), mRNA 
0   NM_001014518.1  CG2368-RK, transcript variant K (psq), mRNA 
0   NM_206086.1  CG2368-RC, transcript variant C (psq), mRNA 
0   NM_165790.1  CG2368-RA, transcript variant A (psq), mRNA 
0   NM_078962.2  CG2368-RB, transcript variant B (psq), mRNA 
0   NM_001014520.1  CG2368-RI, transcript variant I (psq), mRNA 
0   NM_001014517.1  CG2368-RL, transcript variant L (psq), mRNA 
0   NM_206795.1  CG33487-RA (CG33487), mRNA 
0   NM_206794.1  CG33496-RA (CG33496), mRNA 
0   14  NM_167121.1  CG9650-RC, transcript variant C (CG9650), mRNA 
0   14  NM_132157.1  CG9650-RB, transcript variant B (CG9650), mRNA 
0   13  NM_167123.2  CG9650-RA, transcript variant A (CG9650), mRNA 
0   NM_078545.2  CG12653-RA (btd), mRNA 
0   NM_166194.1  CG5522-RB, transcript variant B (CG5522), mRNA 
0   NM_166195.1  CG5522-RE, transcript variant E (CG5522), mRNA 
0   NM_166193.1  CG5522-RA, transcript variant A (CG5522), mRNA 
0   11  NM_132114.1  CG14442-RA (CG14442), mRNA 
0   NM_141603.1  CG11983-RA (CG11983), mRNA 
0   NM_167677.1  CG12530-RB, transcript variant B (Cdc42), mRNA 
0   NM_167642.1  CG7893-RB, transcript variant B (vav), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
 
DC
+- 
DM
 
VM
 
VB
 
Caspase-3 signal
N
 
DB
DC
++ 
DM
VM
 
VB
 
Dcompartment   Penetrance
     

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