National Institute of Genetics
Contact us      Quick Search       
NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -
Home Home
Japanese | English  
NIG-RNAi Strains Detail
Request : Click the "Order" button to request for this stock   request request_help.gif
Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 6990R-1 
 Symbol HP1c  Full Name HP1c 
 CG No CG6990  Old CG No CG6990 
 Synonyms Hp1c, HP1, CG6990, HP1c 
 Accession No (Link to NCBI) NM_142836.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Bauke AC, Sasse S, Matzat T, Klämbt C.
A transcriptional network controlling glial development in the Drosophila visual system.
Development (2015) 142(12) 2184-93 [ PubMed ID = 26015542 ] [ RRC reference ]

Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgACGAGCCCAACTTCGTGGTGG 
 Primer Seq. 3'
aatctagaggtaccGACGGGCGCACTGCTAATGTG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 ACGAGCCCAA CTTCGTGGTG GAGCGCATCA TGGACAAGCG CATTACCAGC GAAGGCAAGG 
0061 TTGAGTACTA CATCAAGTGG CGTGGCTACA CGTCGGCGGA CAACACCTGG GAGCCCGAGG 
0121 AGAACTGCGA TTGCCCGAAT CTCATCCAGA AATTCGAGGA GTCGCGCGCC AAGTCCAAGA 
0181 AGCGCGGCGA GAAGAAACCC AAGTGCGAAG AGATCCAGAA GCTGCGCGGC TACGAGCGCG 
0241 GCTTGGAGCT GGCCGAGATC GTGGGCGCAA CGGATGTGAC GGGCGACATC AAGTATCTGG 
0301 TACGCTGGCA GTTCTGCGAC GAGTTCGACT TGGTGCCATC GGCACAGATC GTGGAGAAGG 
0361 ATCCGCAAAT GCTGATTGAC TATTTCCAGA AGATGGCACC TTACTCCCGT CACATTGCGA 
0421 TGCGAATGAA GGGCGTGCCG GAGGAGCTGC GTTTGGCGGC CTCGCGCACC AGTTATCCGC 
0481 ACATTAGCAG TGCGCCCGTC  
 in silico PCR Fragment
0001 ACGAGCCCAA CTTCGTGGTG GAGCGCATCA TGGACAAGCG CATTACCAGC GAAGGCAAGG 
0061 TTGAGTACTA CATCAAGTGG CGTGGCTACA CGTCGGCGGA CAACACCTGG GAGCCCGAGG 
0121 AGAACTGCGA TTGCCCGAAT CTCATCCAGA AATTCGAGGA GTCGCGCGCC AAGTCCAAGA 
0181 AGCGCGGCGA GAAGAAACCC AAGTGCGAAG AGATCCAGAA GCTGCGCGGC TACGAGCGCG 
0241 GCTTGGAGCT GGCCGAGATC GTGGGCGCAA CGGATGTGAC GGGCGACATC AAGTATCTGG 
0301 TGCGCTGGCA GTTCTGCGAC GAGTTCGACT TGGTGCCATC GGCACAGATC GTGGAGAAGG 
0361 ATCCGCAAAT GCTGATTGAC TATTTCCAGA AGATGGCACC TTACTCCCGT CACATTGCGA 
0421 TGCGAATGAA GGGCGTGCCG GAGGAGCTGC GTTTGGCGGC CTCGCGCACC AGTTATCCGC 
0481 ACATTAGCAG TGCGCCCGTC  
 Assemble Data

6990R-1.IR_full       1   ACGAGCCCAACTTCGTGGTGGAGCGCATCATGGACAAGCGCATTACCAGCGAAGGCAAGG 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6990R-1.in silico     1   ACGAGCCCAACTTCGTGGTGGAGCGCATCATGGACAAGCGCATTACCAGCGAAGGCAAGG 60


6990R-1.IR_full       61  TTGAGTACTACATCAAGTGGCGTGGCTACACGTCGGCGGACAACACCTGGGAGCCCGAGG 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6990R-1.in silico     61  TTGAGTACTACATCAAGTGGCGTGGCTACACGTCGGCGGACAACACCTGGGAGCCCGAGG 120


6990R-1.IR_full       121 AGAACTGCGATTGCCCGAATCTCATCCAGAAATTCGAGGAGTCGCGCGCCAAGTCCAAGA 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6990R-1.in silico     121 AGAACTGCGATTGCCCGAATCTCATCCAGAAATTCGAGGAGTCGCGCGCCAAGTCCAAGA 180


6990R-1.IR_full       181 AGCGCGGCGAGAAGAAACCCAAGTGCGAAGAGATCCAGAAGCTGCGCGGCTACGAGCGCG 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6990R-1.in silico     181 AGCGCGGCGAGAAGAAACCCAAGTGCGAAGAGATCCAGAAGCTGCGCGGCTACGAGCGCG 240


6990R-1.IR_full       241 GCTTGGAGCTGGCCGAGATCGTGGGCGCAACGGATGTGACGGGCGACATCAAGTATCTGG 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6990R-1.in silico     241 GCTTGGAGCTGGCCGAGATCGTGGGCGCAACGGATGTGACGGGCGACATCAAGTATCTGG 300


6990R-1.IR_full       301 TACGCTGGCAGTTCTGCGACGAGTTCGACTTGGTGCCATCGGCACAGATCGTGGAGAAGG 360
                          | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6990R-1.in silico     301 TGCGCTGGCAGTTCTGCGACGAGTTCGACTTGGTGCCATCGGCACAGATCGTGGAGAAGG 360


6990R-1.IR_full       361 ATCCGCAAATGCTGATTGACTATTTCCAGAAGATGGCACCTTACTCCCGTCACATTGCGA 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6990R-1.in silico     361 ATCCGCAAATGCTGATTGACTATTTCCAGAAGATGGCACCTTACTCCCGTCACATTGCGA 420


6990R-1.IR_full       421 TGCGAATGAAGGGCGTGCCGGAGGAGCTGCGTTTGGCGGCCTCGCGCACCAGTTATCCGC 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6990R-1.in silico     421 TGCGAATGAAGGGCGTGCCGGAGGAGCTGCGTTTGGCGGCCTCGCGCACCAGTTATCCGC 480


6990R-1.IR_full       481 ACATTAGCAGTGCGCCCGTC 500
                          ||||||||||||||||||||
6990R-1.in silico     481 ACATTAGCAGTGCGCCCGTC 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_142836.2  CG6990-RA (HP1c), mRNA 
0.41   NM_168785.1  CG14080-RA, transcript variant A (Mkp3), mRNA 
0.41   NM_140830.1  CG14080-RB, transcript variant B (Mkp3), mRNA 
0   NM_137311.2  CG8566-RD (unc-104), mRNA 
0   NM_057619.3  CG3710-RA (TfIIS), mRNA 
0   NM_135339.2  CG12375-RA (CG12375), mRNA 
0   14  NM_135239.1  CG18304-RA (CG18304), mRNA 
0   NM_142677.1  CG12278-RA (CG12278), mRNA 
0   NM_136080.1  CG10431-RA (CG10431), mRNA 
0   NM_134935.2  CG3248-RA (CG3248), mRNA 
0   NM_137081.2  CG30483-RA (Prosap), mRNA 
0   NM_135257.1  CG4496-RA (CG4496), mRNA 
0   13  NM_175954.1  CG33123-RA (CG33123), mRNA 
0   NM_001038966.1  CG33967-RA (CG33967), mRNA 
0   NM_136201.3  CG2614-RA (CG2614), mRNA 
0   NM_138212.1  CG13896-RA (CG13896), mRNA 
0   NM_078740.2  CG8817-RB, transcript variant B (lilli), mRNA 
0   NM_164517.1  CG8817-RC, transcript variant C (lilli), mRNA 
0   NM_164516.1  CG8817-RA, transcript variant A (lilli), mRNA 
0   NM_079442.2  CG8522-RC, transcript variant C (HLH106), mRNA 
0   NM_168815.1  CG8522-RA, transcript variant A (HLH106), mRNA 
0   NM_168816.1  CG8522-RB, transcript variant B (HLH106), mRNA 
0   NM_165524.1  CG30503-RA (CG30503), mRNA 
0   NM_166920.1  CG4376-RB, transcript variant B (Actn), mRNA 
0   NM_058137.3  CG4376-RC, transcript variant C (Actn), mRNA 
0   NM_058136.3  CG4376-RA, transcript variant A (Actn), mRNA 
0   NM_079730.2  CG6669-RA (klg), mRNA 
0   NM_168485.1  CG5684-RC, transcript variant C (Pop2), mRNA 
0   NM_140178.3  CG7828-RA (CG7828), mRNA 
0   NM_168484.1  CG5684-RB, transcript variant B (Pop2), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
 
DC
+- 
DM
 
VM
 
VB
 
Caspase-3 signal
N
++ 
DB
DC
++ 
DM
++ 
VM
VB
 
Dcompartment   Penetrance
     

SHIGEN - SHared Information of GENetic resources - National Institute of Genetics (NIG)
Copyright (c) National Institute of Genetics (NIG)
All rights reserved.
The NIG-Fly is a part of the National BioResource Project which started in 2002.