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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
6990R-1 |
Symbol |
HP1c |
Full Name |
HP1c |
CG No |
CG6990 |
Old CG No |
CG6990 |
Synonyms |
Hp1c, HP1, CG6990, HP1c |
Accession No (Link to NCBI) |
NM_142836.2 |
Inserted Chr. |
lll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
Map Viewer |
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Reference
[Please submit your publication]
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Bauke AC, Sasse S, Matzat T, Klämbt C. A transcriptional network controlling glial development in the Drosophila visual system. Development (2015) 142(12) 2184-93
[
PubMed ID = 26015542
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgACGAGCCCAACTTCGTGGTGG |
Primer Seq. 3' |
aatctagaggtaccGACGGGCGCACTGCTAATGTG |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 ACGAGCCCAA CTTCGTGGTG GAGCGCATCA TGGACAAGCG CATTACCAGC GAAGGCAAGG
0061 TTGAGTACTA CATCAAGTGG CGTGGCTACA CGTCGGCGGA CAACACCTGG GAGCCCGAGG
0121 AGAACTGCGA TTGCCCGAAT CTCATCCAGA AATTCGAGGA GTCGCGCGCC AAGTCCAAGA
0181 AGCGCGGCGA GAAGAAACCC AAGTGCGAAG AGATCCAGAA GCTGCGCGGC TACGAGCGCG
0241 GCTTGGAGCT GGCCGAGATC GTGGGCGCAA CGGATGTGAC GGGCGACATC AAGTATCTGG
0301 TACGCTGGCA GTTCTGCGAC GAGTTCGACT TGGTGCCATC GGCACAGATC GTGGAGAAGG
0361 ATCCGCAAAT GCTGATTGAC TATTTCCAGA AGATGGCACC TTACTCCCGT CACATTGCGA
0421 TGCGAATGAA GGGCGTGCCG GAGGAGCTGC GTTTGGCGGC CTCGCGCACC AGTTATCCGC
0481 ACATTAGCAG TGCGCCCGTC |
in silico PCR Fragment |
0001 ACGAGCCCAA CTTCGTGGTG GAGCGCATCA TGGACAAGCG CATTACCAGC GAAGGCAAGG
0061 TTGAGTACTA CATCAAGTGG CGTGGCTACA CGTCGGCGGA CAACACCTGG GAGCCCGAGG
0121 AGAACTGCGA TTGCCCGAAT CTCATCCAGA AATTCGAGGA GTCGCGCGCC AAGTCCAAGA
0181 AGCGCGGCGA GAAGAAACCC AAGTGCGAAG AGATCCAGAA GCTGCGCGGC TACGAGCGCG
0241 GCTTGGAGCT GGCCGAGATC GTGGGCGCAA CGGATGTGAC GGGCGACATC AAGTATCTGG
0301 TGCGCTGGCA GTTCTGCGAC GAGTTCGACT TGGTGCCATC GGCACAGATC GTGGAGAAGG
0361 ATCCGCAAAT GCTGATTGAC TATTTCCAGA AGATGGCACC TTACTCCCGT CACATTGCGA
0421 TGCGAATGAA GGGCGTGCCG GAGGAGCTGC GTTTGGCGGC CTCGCGCACC AGTTATCCGC
0481 ACATTAGCAG TGCGCCCGTC |
Assemble Data |
6990R-1.IR_full 1 ACGAGCCCAACTTCGTGGTGGAGCGCATCATGGACAAGCGCATTACCAGCGAAGGCAAGG 60
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6990R-1.in silico 1 ACGAGCCCAACTTCGTGGTGGAGCGCATCATGGACAAGCGCATTACCAGCGAAGGCAAGG 60
6990R-1.IR_full 61 TTGAGTACTACATCAAGTGGCGTGGCTACACGTCGGCGGACAACACCTGGGAGCCCGAGG 120
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6990R-1.in silico 61 TTGAGTACTACATCAAGTGGCGTGGCTACACGTCGGCGGACAACACCTGGGAGCCCGAGG 120
6990R-1.IR_full 121 AGAACTGCGATTGCCCGAATCTCATCCAGAAATTCGAGGAGTCGCGCGCCAAGTCCAAGA 180
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6990R-1.in silico 121 AGAACTGCGATTGCCCGAATCTCATCCAGAAATTCGAGGAGTCGCGCGCCAAGTCCAAGA 180
6990R-1.IR_full 181 AGCGCGGCGAGAAGAAACCCAAGTGCGAAGAGATCCAGAAGCTGCGCGGCTACGAGCGCG 240
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6990R-1.in silico 181 AGCGCGGCGAGAAGAAACCCAAGTGCGAAGAGATCCAGAAGCTGCGCGGCTACGAGCGCG 240
6990R-1.IR_full 241 GCTTGGAGCTGGCCGAGATCGTGGGCGCAACGGATGTGACGGGCGACATCAAGTATCTGG 300
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6990R-1.in silico 241 GCTTGGAGCTGGCCGAGATCGTGGGCGCAACGGATGTGACGGGCGACATCAAGTATCTGG 300
6990R-1.IR_full 301 TACGCTGGCAGTTCTGCGACGAGTTCGACTTGGTGCCATCGGCACAGATCGTGGAGAAGG 360
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6990R-1.in silico 301 TGCGCTGGCAGTTCTGCGACGAGTTCGACTTGGTGCCATCGGCACAGATCGTGGAGAAGG 360
6990R-1.IR_full 361 ATCCGCAAATGCTGATTGACTATTTCCAGAAGATGGCACCTTACTCCCGTCACATTGCGA 420
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6990R-1.in silico 361 ATCCGCAAATGCTGATTGACTATTTCCAGAAGATGGCACCTTACTCCCGTCACATTGCGA 420
6990R-1.IR_full 421 TGCGAATGAAGGGCGTGCCGGAGGAGCTGCGTTTGGCGGCCTCGCGCACCAGTTATCCGC 480
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6990R-1.in silico 421 TGCGAATGAAGGGCGTGCCGGAGGAGCTGCGTTTGGCGGCCTCGCGCACCAGTTATCCGC 480
6990R-1.IR_full 481 ACATTAGCAGTGCGCCCGTC 500
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6990R-1.in silico 481 ACATTAGCAGTGCGCCCGTC 500
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
0 |
NM_142836.2 |
CG6990-RA (HP1c), mRNA |
0.41 |
2 |
3 |
4 |
5 |
NM_168785.1 |
CG14080-RA, transcript variant A (Mkp3), mRNA |
0.41 |
2 |
3 |
4 |
5 |
NM_140830.1 |
CG14080-RB, transcript variant B (Mkp3), mRNA |
0 |
0 |
3 |
5 |
5 |
NM_137311.2 |
CG8566-RD (unc-104), mRNA |
0 |
0 |
2 |
4 |
9 |
NM_057619.3 |
CG3710-RA (TfIIS), mRNA |
0 |
0 |
2 |
4 |
2 |
NM_135339.2 |
CG12375-RA (CG12375), mRNA |
0 |
0 |
2 |
3 |
14 |
NM_135239.1 |
CG18304-RA (CG18304), mRNA |
0 |
0 |
2 |
3 |
4 |
NM_142677.1 |
CG12278-RA (CG12278), mRNA |
0 |
0 |
2 |
3 |
2 |
NM_136080.1 |
CG10431-RA (CG10431), mRNA |
0 |
0 |
1 |
5 |
4 |
NM_134935.2 |
CG3248-RA (CG3248), mRNA |
0 |
0 |
1 |
4 |
6 |
NM_137081.2 |
CG30483-RA (Prosap), mRNA |
0 |
0 |
1 |
4 |
3 |
NM_135257.1 |
CG4496-RA (CG4496), mRNA |
0 |
0 |
1 |
3 |
13 |
NM_175954.1 |
CG33123-RA (CG33123), mRNA |
0 |
0 |
1 |
3 |
6 |
NM_001038966.1 |
CG33967-RA (CG33967), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_136201.3 |
CG2614-RA (CG2614), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_138212.1 |
CG13896-RA (CG13896), mRNA |
0 |
0 |
1 |
2 |
7 |
NM_078740.2 |
CG8817-RB, transcript variant B (lilli), mRNA |
0 |
0 |
1 |
2 |
7 |
NM_164517.1 |
CG8817-RC, transcript variant C (lilli), mRNA |
0 |
0 |
1 |
2 |
7 |
NM_164516.1 |
CG8817-RA, transcript variant A (lilli), mRNA |
0 |
0 |
1 |
2 |
5 |
NM_079442.2 |
CG8522-RC, transcript variant C (HLH106), mRNA |
0 |
0 |
1 |
2 |
5 |
NM_168815.1 |
CG8522-RA, transcript variant A (HLH106), mRNA |
0 |
0 |
1 |
2 |
5 |
NM_168816.1 |
CG8522-RB, transcript variant B (HLH106), mRNA |
0 |
0 |
1 |
2 |
5 |
NM_165524.1 |
CG30503-RA (CG30503), mRNA |
0 |
0 |
1 |
2 |
5 |
NM_166920.1 |
CG4376-RB, transcript variant B (Actn), mRNA |
0 |
0 |
1 |
2 |
5 |
NM_058137.3 |
CG4376-RC, transcript variant C (Actn), mRNA |
0 |
0 |
1 |
2 |
5 |
NM_058136.3 |
CG4376-RA, transcript variant A (Actn), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_079730.2 |
CG6669-RA (klg), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_168485.1 |
CG5684-RC, transcript variant C (Pop2), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_140178.3 |
CG7828-RA (CG7828), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_168484.1 |
CG5684-RB, transcript variant B (Pop2), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
N |
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++ |
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DB |
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+ |
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DC |
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++ |
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DM |
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++ |
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VM |
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+ |
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VB |
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