National Institute of Genetics
Contact us      Quick Search       
NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -
Home Home
Japanese | English  
NIG-RNAi Strains Detail
Request : Click the "Order" button to request for this stock   request request_help.gif
Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 6907R-2 
 Symbol CG6907  Full Name CG6907 
 CG No CG6907  Old CG No CG6907 
 Synonyms CG6907 
 Accession No (Link to NCBI) NM_135088.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTGACCAGTTTCCGCAAGCGCA 
 Primer Seq. 3'
aatctagaggtaccGCTATCGTCCCACAAGGTAGT 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 TGACCAGTTT TCCGCAAGGC GCACCGTGCA AGAAGCCAAA TCCGCGGCAC CCGCACCTCG 
0061 CCACACACGG CCGCAGGTGA TCACCTCCAG CGGAAATCCG TACTTGGACG TGGTCATTGG 
0121 CGGCGGTCTG CCCATGGGTT CGATCTGCCT GATCGAGGAG GATCGCTTCA TGACGCACGC 
0181 CAAGGTGCTG GCCAAAGTAC TTTCCTGGCC GAGGGTGTGA TTTCCAAGCA GGAGATATTT 
0241 TCTGGGCAGC CTGGACGACA TTCCAGCCGA GATGCTGCGT CGTCTGCCCA GACCGCTGAC 
0301 CGACCAGGAA TCGATGGAGC AAAGCGAGGT GCAAGCGCTG GGAGATGCTG GCGCCGAAAA 
0361 TGGCCTAAGG ATCGCCTGGC GATACAATGA TCTGCCGCTG GTGAATTCGG AACATGCCAC 
0421 AGCAAAAATC GGACACCATT TCAATCTGAT GGAACAGATG GACTCCATGA TGCTCTACAA 
0481 TGTCAAGACT ACCTTGTGGG ACGATAGC 
 in silico PCR Fragment
0001 TGACCAG-TT TCCGCAA-GC GCACCGTGC- AGAAGCC-AA TCCGCGGCAC CCGCACCTCA 
0061 CCGCACACGG -CGCAGGTGA TCACCTCCAG CGGAAATCCG TACTTGGACG TGGTCATTGG 
0121 CGGCGGTCTG CCCATGGGTT CGATCTGCCT GATCGAGGAG GATCGCTTCA TGACGCACGC 
0181 CAAGGTGCTG GCC-AAGTAC TTT-CTGGCC GAGGGTGTGA TTTCCAAGCA GGAGATA-TT 
0241 TCTGGGCAGC CTGGACGACA TTCCAGCCGA GATGCTGCGC CGTCTGCCCA GACCGCTGAC 
0301 CGACCAGGAA TCGATGGAGC AAAGCGAGGT GCAAGCGCTG GGAGATGCTG GCGCCGAAAA 
0361 TGGCCTAAGG ATCGCCTGGC GATACAATGA TCTGCCGCTG GTGAATTCGG AACATGCCAC 
0421 AGCAAAAATC GGACACCATT TCAATCTGAT GGAACAGATG GACTCCATGA TGCTCTACAA 
0481 TGTCAAGACT ACCTTGTGGG ACGATAGC 
 Assemble Data

6907R-2.IR_full       1   TGACCAGTTTTCCGCAAGGCGCACCGTGCAAGAAGCCAAATCCGCGGCACCCGCACCTCG 60
                          ||||||| ||||||||| ||||||||||| ||||||| ||||||||||||||||||||| 
6907R-2.in silico     1   TGACCAG-TTTCCGCAA-GCGCACCGTGC-AGAAGCC-AATCCGCGGCACCCGCACCTCA 60


6907R-2.IR_full       61  CCACACACGGCCGCAGGTGATCACCTCCAGCGGAAATCCGTACTTGGACGTGGTCATTGG 120
                          || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
6907R-2.in silico     61  CCGCACACGG-CGCAGGTGATCACCTCCAGCGGAAATCCGTACTTGGACGTGGTCATTGG 120


6907R-2.IR_full       121 CGGCGGTCTGCCCATGGGTTCGATCTGCCTGATCGAGGAGGATCGCTTCATGACGCACGC 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6907R-2.in silico     121 CGGCGGTCTGCCCATGGGTTCGATCTGCCTGATCGAGGAGGATCGCTTCATGACGCACGC 180


6907R-2.IR_full       181 CAAGGTGCTGGCCAAAGTACTTTCCTGGCCGAGGGTGTGATTTCCAAGCAGGAGATATTT 240
                          ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||
6907R-2.in silico     181 CAAGGTGCTGGCC-AAGTACTTT-CTGGCCGAGGGTGTGATTTCCAAGCAGGAGATA-TT 240


6907R-2.IR_full       241 TCTGGGCAGCCTGGACGACATTCCAGCCGAGATGCTGCGTCGTCTGCCCAGACCGCTGAC 300
                          ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
6907R-2.in silico     241 TCTGGGCAGCCTGGACGACATTCCAGCCGAGATGCTGCGCCGTCTGCCCAGACCGCTGAC 300


6907R-2.IR_full       301 CGACCAGGAATCGATGGAGCAAAGCGAGGTGCAAGCGCTGGGAGATGCTGGCGCCGAAAA 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6907R-2.in silico     301 CGACCAGGAATCGATGGAGCAAAGCGAGGTGCAAGCGCTGGGAGATGCTGGCGCCGAAAA 360


6907R-2.IR_full       361 TGGCCTAAGGATCGCCTGGCGATACAATGATCTGCCGCTGGTGAATTCGGAACATGCCAC 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6907R-2.in silico     361 TGGCCTAAGGATCGCCTGGCGATACAATGATCTGCCGCTGGTGAATTCGGAACATGCCAC 420


6907R-2.IR_full       421 AGCAAAAATCGGACACCATTTCAATCTGATGGAACAGATGGACTCCATGATGCTCTACAA 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6907R-2.in silico     421 AGCAAAAATCGGACACCATTTCAATCTGATGGAACAGATGGACTCCATGATGCTCTACAA 480


6907R-2.IR_full       481 TGTCAAGACTACCTTGTGGGACGATAGC 508
                          ||||||||||||||||||||||||||||
6907R-2.in silico     481 TGTCAAGACTACCTTGTGGGACGATAGC 508

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_135088.2  CG6907-RA (CG6907), mRNA 
0.2   NM_140769.1  CG5290-RA (CG5290), mRNA 
0   NM_134856.1  CG15398-RA (CG15398), mRNA 
0   NM_136569.2  CG8272-RA (CG8272), mRNA 
0   NM_079470.2  CG10564-RA (Ac78C), mRNA 
0   NM_168775.1  CG4059-RA, transcript variant A (ftz-f1), mRNA 
0   NM_079419.2  CG4059-RB, transcript variant B (ftz-f1), mRNA 
0   NM_079814.2  CG5502-RA (RpL4), mRNA 
0   NM_176587.1  CG2171-RA, transcript variant A (Tpi), mRNA 
0   NM_176589.1  CG2171-RC, transcript variant C (Tpi), mRNA 
0   NM_176588.1  CG2171-RB, transcript variant B (Tpi), mRNA 
0   NM_141318.2  CG2104-RA (CG2104), mRNA 
0   NM_132200.1  CG1531-RB (CG1531), mRNA 
0   NM_137447.2  CG5098-RA (CG5098), mRNA 
0   NM_130589.1  CG14801-RB, transcript variant B (CG14801), mRNA 
0   NM_166908.1  CG14801-RD, transcript variant D (CG14801), mRNA 
0   NM_166907.1  CG14801-RC, transcript variant C (CG14801), mRNA 
0   NM_166906.1  CG14801-RA, transcript variant A (CG14801), mRNA 
0   NM_079114.1  CG11290-RA (enok), mRNA 
0   NM_169127.1  CG31559-RA (CG31559), mRNA 
0   NM_165341.1  CG1768-RB, transcript variant B (dia), mRNA 
0   NM_057633.3  CG1768-RA, transcript variant A (dia), mRNA 
0   NM_080316.1  CG2655-RA (HLH3B), mRNA 
0   NM_205940.1  CG10595-RB, transcript variant B (d), mRNA 
0   NM_137582.2  CG11237-RA (Oseg6), mRNA 
0   NM_205939.1  CG10595-RC, transcript variant C (d), mRNA 
0   NM_175991.1  CG10595-RA, transcript variant A (d), mRNA 
0   NM_057796.2  CG10379-RA (mbc), mRNA 
0   NM_135703.2  CG5325-RA, transcript variant A (CG5325), mRNA 
0   NM_164991.1  CG5325-RB, transcript variant B (CG5325), mRNA 

SHIGEN - SHared Information of GENetic resources - National Institute of Genetics (NIG)
Copyright (c) National Institute of Genetics (NIG)
All rights reserved.
The NIG-Fly is a part of the National BioResource Project which started in 2002.