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NIG-RNAi Strains Detail |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
6883R-1 |
Symbol |
trh |
Full Name |
trachealess |
CG No |
CG6883 |
Old CG No |
CG6883 |
Synonyms |
TRH, DMU42699, 3.1, l(3)10512, CG6883, trh, CG13885, HDC07747, BP1081, unnamed, trachealess, Trh |
Accession No (Link to NCBI) |
NM_079148.2 |
Inserted Chr. |
ll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Nitta Y, Yamazaki D, Sugie A, Hiroi M, Tabata T. DISCO Interacting Protein 2 regulates axonal bifurcation and guidance of Drosophila mushroom body neurons. Dev Biol (2017) 421(2) 233-244
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PubMed ID = 27908785
]
[
RRC reference
]
Bauke AC, Sasse S, Matzat T, Klämbt C. A transcriptional network controlling glial development in the Drosophila visual system. Development (2015) 142(12) 2184-93
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PubMed ID = 26015542
]
[
RRC reference
]
Umetsu D, Dunst S, Dahmann C. An RNA interference screen for genes required to shape the anteroposterior compartment boundary in Drosophila identifies the Eph receptor. PLoS One (2014) 9(12) e114340
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PubMed ID = 25473846
]
[
RRC reference
]
Mummery-Widmer JL, Yamazaki M, Stoeger T, Novatchkova M, Bhalerao S, Chen D, Dietzl G, Dickson BJ, Knoblich JA. Genome-wide analysis of Notch signalling in Drosophila by transgenic RNAi. Nature (2009) 458(7241) 987-92
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PubMed ID = 19363474
]
[
RRC reference
]
Tajiri R, Tsuji T, Ueda R, Saigo K, Kojima T. Fate determination of Drosophila leg distal regions by trachealess and tango through repression and stimulation, respectively, of Bar homeobox gene expression in the future pretarsus and tarsus. Dev Biol (2007) 303(2) 461-73
[
PubMed ID = 17187773
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgGGATACCAGAGACAGCCCACG |
Primer Seq. 3' |
aatctagaggtaccTGGGTGCCCTGATGTTGCTCG |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 GGATACCAGA GACAGCCCAC GCCCGGACAT CCCGGAAGCC ACATGGCCAC CATGGGATCT
0061 CTGGGCATGC CCGCGGTGCC CTTCACCCAC AGCTGGATGG TGCCCACGCA GGACCTTTGC
0121 GCCATGCCAC CCTACAACAA AATGACCGGA CACCAGCAGC CGCCAGGTGC CNGGGAATGC
0181 ACGCCCAGCA ACAGCCCCTC GAGCCCGGCA TCCTGGAGCT GCGCAAGGAG AAGTCGAGGG
0241 ACGCGGCGAG ANCGCGGCGC GGAAAGGAGA ACTACGAGTT CTACGAGCTA GCCAAGATGC
0301 TCCCTCTGNC GGCAGCCATC ANCAGCCAGC TGGACAAGGC CTCGATCATA AGACTGACCA
0361 TCAGCTACCT GAAGCTGAGG GATTTCTCCG GACACgGCGA TCCGCCATGG ACTCGGGAAG
0421 CCTCTAGCAG CAGTAAGCTA AAAAGTGCCG CCATTCGTCG CAGCCCCGCT GTTGATTTGT
0481 TCGAGCAACA TCAGGGCACC CA |
in silico PCR Fragment |
0001 GGATACCAGA GACAGCCCAC GCCCGGACAT CCCGGAAGCC ACATGGCCAC CATGGGATCT
0061 CTGGGCATGC CCGCGGTGCC CTTCACCCAC AGCTGGATGG TGCCCACGCA GGACCTTTGC
0121 GCCATGCCAC CCTACAACAA AATGACCGGA CACCAGCAGC CGCCAGGTGC C--GGAATGC
0181 ACGCCCAGCA ACAGCCCCTC GAGCCCGGCA TCCTGGAGCT GCGCAAGGAG AAGTCGAGGG
0241 ACGCGGCGAG ATCGCGGCGC GGAAAGGAGA ACTACGAGTT CTACGAGCTA GCCAAGATGC
0301 TCCCTCTGCC GGCAGCCATC ACCAGCCAGC TGGACAAGGC CTCGATCATA AGACTGACCA
0361 TCAGCTACCT GAAGCTGAGG GATTTCTCCG GACACGGCGA TCCGCCATGG ACTCGGGAAG
0421 CCTCTAGCAG CAGTAAGCTA AAAAGTGCCG CCATTCGTCG CAGCCCCGCT GTTGATTTGT
0481 TCGAGCAACA TCAGGGCACC CA |
Assemble Data |
6883R-1.IR_full 1 GGATACCAGAGACAGCCCACGCCCGGACATCCCGGAAGCCACATGGCCACCATGGGATCT 60
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6883R-1.in silico 1 GGATACCAGAGACAGCCCACGCCCGGACATCCCGGAAGCCACATGGCCACCATGGGATCT 60
6883R-1.IR_full 61 CTGGGCATGCCCGCGGTGCCCTTCACCCACAGCTGGATGGTGCCCACGCAGGACCTTTGC 120
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6883R-1.in silico 61 CTGGGCATGCCCGCGGTGCCCTTCACCCACAGCTGGATGGTGCCCACGCAGGACCTTTGC 120
6883R-1.IR_full 121 GCCATGCCACCCTACAACAAAATGACCGGACACCAGCAGCCGCCAGGTGCCNGGGAATGC 180
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6883R-1.in silico 121 GCCATGCCACCCTACAACAAAATGACCGGACACCAGCAGCCGCCAGGTGCC--GGAATGC 180
6883R-1.IR_full 181 ACGCCCAGCAACAGCCCCTCGAGCCCGGCATCCTGGAGCTGCGCAAGGAGAAGTCGAGGG 240
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6883R-1.in silico 181 ACGCCCAGCAACAGCCCCTCGAGCCCGGCATCCTGGAGCTGCGCAAGGAGAAGTCGAGGG 240
6883R-1.IR_full 241 ACGCGGCGAGANCGCGGCGCGGAAAGGAGAACTACGAGTTCTACGAGCTAGCCAAGATGC 300
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6883R-1.in silico 241 ACGCGGCGAGATCGCGGCGCGGAAAGGAGAACTACGAGTTCTACGAGCTAGCCAAGATGC 300
6883R-1.IR_full 301 TCCCTCTGNCGGCAGCCATCANCAGCCAGCTGGACAAGGCCTCGATCATAAGACTGACCA 360
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6883R-1.in silico 301 TCCCTCTGCCGGCAGCCATCACCAGCCAGCTGGACAAGGCCTCGATCATAAGACTGACCA 360
6883R-1.IR_full 361 TCAGCTACCTGAAGCTGAGGGATTTCTCCGGACACGGCGATCCGCCATGGACTCGGGAAG 420
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6883R-1.in silico 361 TCAGCTACCTGAAGCTGAGGGATTTCTCCGGACACGGCGATCCGCCATGGACTCGGGAAG 420
6883R-1.IR_full 421 CCTCTAGCAGCAGTAAGCTAAAAAGTGCCGCCATTCGTCGCAGCCCCGCTGTTGATTTGT 480
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6883R-1.in silico 421 CCTCTAGCAGCAGTAAGCTAAAAAGTGCCGCCATTCGTCGCAGCCCCGCTGTTGATTTGT 480
6883R-1.IR_full 481 TCGAGCAACATCAGGGCACCCA 502
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6883R-1.in silico 481 TCGAGCAACATCAGGGCACCCA 502
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
0 |
NM_001043110.1 |
CG6883-RB, transcript variant B (trh), mRNA |
100 |
482 |
0 |
0 |
0 |
NM_079148.2 |
CG6883-RA, transcript variant A (trh), mRNA |
0.41 |
2 |
3 |
3 |
2 |
NM_135605.2 |
CG6729-RA (CG6729), mRNA |
0 |
0 |
2 |
5 |
3 |
NM_143225.2 |
CG6490-RA (CG6490), mRNA |
0 |
0 |
2 |
4 |
2 |
NM_135839.2 |
CG7953-RA (CG7953), mRNA |
0 |
0 |
1 |
7 |
6 |
NM_165738.1 |
CG2269-RC, transcript variant C (CG2269), mRNA |
0 |
0 |
1 |
7 |
6 |
NM_136709.2 |
CG2269-RA, transcript variant A (CG2269), mRNA |
0 |
0 |
1 |
7 |
6 |
NM_165737.1 |
CG2269-RB, transcript variant B (CG2269), mRNA |
0 |
0 |
1 |
4 |
3 |
NM_141128.2 |
CG9063-RA (CG9063), mRNA |
0 |
0 |
1 |
3 |
6 |
NM_169061.1 |
CG9063-RA (CG9063), mRNA,4,5,-tris-phosphate receptor CG1063-RA, transcript variant A (Itp-r83A), mRNA |
0 |
0 |
1 |
3 |
6 |
NM_169060.1 |
CG9063-RA (CG9063), mRNA,4,5,-tris-phosphate receptor CG1063-RA, transcript variant A (Itp-r83A), mRNA,4,5,-tris-phosphate receptor CG1063-RB, transcript variant B (Itp-r83A), mRNA |
0 |
0 |
1 |
3 |
5 |
NM_132072.1 |
CG14446-RA (CG14446), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_078586.3 |
CG4070-RA, transcript variant A (Tis11), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_167333.2 |
CG4070-RB, transcript variant B (Tis11), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_141965.1 |
CG14395-RA (CG14395), mRNA |
0 |
0 |
1 |
2 |
10 |
NM_057265.3 |
CG1264-RA (lab), mRNA |
0 |
0 |
1 |
2 |
6 |
NM_206154.1 |
CG33130-RB, transcript variant B (l(2)k07433), mRNA |
0 |
0 |
1 |
2 |
6 |
NM_176218.1 |
CG33130-RA, transcript variant A (l(2)k07433), mRNA |
0 |
0 |
1 |
2 |
6 |
NM_206153.1 |
CG33130-RC, transcript variant C (l(2)k07433), mRNA |
0 |
0 |
1 |
2 |
5 |
NM_001043282.1 |
CG4467-RB, transcript variant B (CG4467), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_057597.2 |
CG10719-RA, transcript variant A (brat), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_134302.1 |
CG10719-RB, transcript variant B (brat), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_206004.1 |
CG10719-RC, transcript variant C (brat), mRNA |
0 |
0 |
1 |
2 |
4 |
NR_002032.1 |
CG10719-RC, transcript variant C (brat), mRNA, miscRNA |
0 |
0 |
1 |
2 |
3 |
NM_136250.2 |
CG9247-RA (CG9247), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_001043112.1 |
CG33484-RB, transcript variant B (zormin), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_001043114.1 |
CG33484-RD, transcript variant D (zormin), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_206240.1 |
CG33484-RA, transcript variant A (zormin), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_001043113.1 |
CG33484-RC, transcript variant C (zormin), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_141520.2 |
CG9630-RA (CG9630), mRNA |
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