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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 6747R-2 
 Symbol Ir  Full Name Inwardly rectifying potassium channel 
 CG No CG6747  Old CG No CG6747 
 Synonyms Dir, dKirI, DIR, irk1, CG6747, Ir, Inwardly rectifying potassium channel, Drosophila inward rectifier 
 Accession No (Link to NCBI) NM_142874.2 
 Inserted Chr. lll 
 Insertional Mutation  lethal 
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Umetsu D, Dunst S, Dahmann C.
An RNA interference screen for genes required to shape the anteroposterior compartment boundary in Drosophila identifies the Eph receptor.
PLoS One (2014) 9(12) e114340 [ PubMed ID = 25473846 ] [ RRC reference ]

Ruben M, Drapeau MD, Mizrak D, Blau J.
A mechanism for circadian control of pacemaker neuron excitability.
J Biol Rhythms (2012) 27(5) 353-64 [ PubMed ID = 23010658 ] [ RRC reference ]

Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCCGGCAGACACGTTTCAGTTC 
 Primer Seq. 3'
aatctagaggtaccTCTTGGGACGCGACAACTTGG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 cCNGCAGNAC ACGTTTCAGT TCGCGGCGTG TTCGAAAACG TGTGGTCTTC AAGCACGGCG 
0061 ANTGCAACGT NTGTGCAGGG AAATGTGGCC AAGAGACGGC GTCgNTATCT GCAGGACATC 
0121 TTCACCACCC TGGTTGACGC CCAGTGGcGC TGGACGNTGC TCGTCTTCGC CGCCAGCTTC 
0181 GTGTTCTCGT GGGCCTTCTT TGGATTCATC TGGTGGATCA TCGCCTACGC ACACAATGAT 
0241 CTGGAGTACA CCAATCTCAA GAACCAGTCA CCCGATCTGG TGGCCAACAT GACGCACACG 
0301 GTCTGCGTAA CACAGGTCTC CAATATGATG TCCGCCTTCC TGTACTCCGT GGAAACCCAG 
0361 ACGACGATAG GCTATGGTAA TCGCTATGTG ACGGAGGAGT GCCCGGAGGC GATATTCACG 
0421 ATGTGCATCC AGTGCATCAC GGGTGTCTTC ATCCAGGCGT TCATGGTGGG CATTGTGTTT 
0481 GCCAAGTTGT CGCGTCCCAA GA 
 in silico PCR Fragment
0001 CCGGCAG-AC ACGTTTCAGT TCGCGGCGTG TTCGAAAACG TGTGGTCTTC AAGCACGGCG 
0061 AGTGCAACGT -TGTGCAGGG AAATGTGGCC AAGAGACGGC GTCGCTATCT GCAGGACATC 
0121 TTCACCACCC TGGTTGACGC CCAGTGGCGC TGGACGCTGC TCGTCTTCGC CGCCAGCTTC 
0181 GTGTTCTCGT GGGCCTTCTT TGGATTCATC TGGTGGATCA TCGCCTACGC ACACAATGAT 
0241 CTGGAGTACA CCAATCTCAA GAACCAGTCA CCCGATCTGG TGGCCAACAT AACGCACACG 
0301 GTCTGCGTAA CACAGGTCTC CAATATGATG TCCGCCTTCC TGTACTCCGT GGAAACCCAG 
0361 ACGACGATAG GCTATGGTAA TCGCTATGTG ACGGAGGAGT GCCCGGAGGC GATATTCACG 
0421 ATGTGCATCC AGTGCATCAC GGGTGTCTTC ATCCAGGCGT TCATGGTGGG CATTGTGTTT 
0481 GCCAAGTTGT CGCGTCCCAA GA 
 Assemble Data

6747R-2.IR_full       1   CCNGCAGNACACGTTTCAGTTCGCGGCGTGTTCGAAAACGTGTGGTCTTCAAGCACGGCG 60
                          || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
6747R-2.in silico     1   CCGGCAG-ACACGTTTCAGTTCGCGGCGTGTTCGAAAACGTGTGGTCTTCAAGCACGGCG 60


6747R-2.IR_full       61  ANTGCAACGTNTGTGCAGGGAAATGTGGCCAAGAGACGGCGTCGNTATCTGCAGGACATC 120
                          | |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
6747R-2.in silico     61  AGTGCAACGT-TGTGCAGGGAAATGTGGCCAAGAGACGGCGTCGCTATCTGCAGGACATC 120


6747R-2.IR_full       121 TTCACCACCCTGGTTGACGCCCAGTGGCGCTGGACGNTGCTCGTCTTCGCCGCCAGCTTC 180
                          |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
6747R-2.in silico     121 TTCACCACCCTGGTTGACGCCCAGTGGCGCTGGACGCTGCTCGTCTTCGCCGCCAGCTTC 180


6747R-2.IR_full       181 GTGTTCTCGTGGGCCTTCTTTGGATTCATCTGGTGGATCATCGCCTACGCACACAATGAT 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6747R-2.in silico     181 GTGTTCTCGTGGGCCTTCTTTGGATTCATCTGGTGGATCATCGCCTACGCACACAATGAT 240


6747R-2.IR_full       241 CTGGAGTACACCAATCTCAAGAACCAGTCACCCGATCTGGTGGCCAACATGACGCACACG 300
                          |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
6747R-2.in silico     241 CTGGAGTACACCAATCTCAAGAACCAGTCACCCGATCTGGTGGCCAACATAACGCACACG 300


6747R-2.IR_full       301 GTCTGCGTAACACAGGTCTCCAATATGATGTCCGCCTTCCTGTACTCCGTGGAAACCCAG 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6747R-2.in silico     301 GTCTGCGTAACACAGGTCTCCAATATGATGTCCGCCTTCCTGTACTCCGTGGAAACCCAG 360


6747R-2.IR_full       361 ACGACGATAGGCTATGGTAATCGCTATGTGACGGAGGAGTGCCCGGAGGCGATATTCACG 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6747R-2.in silico     361 ACGACGATAGGCTATGGTAATCGCTATGTGACGGAGGAGTGCCCGGAGGCGATATTCACG 420


6747R-2.IR_full       421 ATGTGCATCCAGTGCATCACGGGTGTCTTCATCCAGGCGTTCATGGTGGGCATTGTGTTT 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6747R-2.in silico     421 ATGTGCATCCAGTGCATCACGGGTGTCTTCATCCAGGCGTTCATGGTGGGCATTGTGTTT 480


6747R-2.IR_full       481 GCCAAGTTGTCGCGTCCCAAGA 502
                          ||||||||||||||||||||||
6747R-2.in silico     481 GCCAAGTTGTCGCGTCCCAAGA 502

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
 
DC
+- 
DM
 
VM
 
VB
 
Caspase-3 signal
N
 
DB
 
DC
 
DM
 
VM
 
VB
 
Dcompartment   Penetrance
     

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