Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
6747R-2 |
Symbol |
Ir |
Full Name |
Inwardly rectifying potassium channel |
CG No |
CG6747 |
Old CG No |
CG6747 |
Synonyms |
Dir, dKirI, DIR, irk1, CG6747, Ir, Inwardly rectifying potassium channel, Drosophila inward rectifier |
Accession No (Link to NCBI) |
NM_142874.2 |
Inserted Chr. |
lll |
Insertional Mutation |
lethal |
Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
Map Viewer |
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Reference
[Please submit your publication]
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Umetsu D, Dunst S, Dahmann C. An RNA interference screen for genes required to shape the anteroposterior compartment boundary in Drosophila identifies the Eph receptor. PLoS One (2014) 9(12) e114340
[
PubMed ID = 25473846
]
[
RRC reference
]
Ruben M, Drapeau MD, Mizrak D, Blau J. A mechanism for circadian control of pacemaker neuron excitability. J Biol Rhythms (2012) 27(5) 353-64
[
PubMed ID = 23010658
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgCCGGCAGACACGTTTCAGTTC |
Primer Seq. 3' |
aatctagaggtaccTCTTGGGACGCGACAACTTGG |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 cCNGCAGNAC ACGTTTCAGT TCGCGGCGTG TTCGAAAACG TGTGGTCTTC AAGCACGGCG
0061 ANTGCAACGT NTGTGCAGGG AAATGTGGCC AAGAGACGGC GTCgNTATCT GCAGGACATC
0121 TTCACCACCC TGGTTGACGC CCAGTGGcGC TGGACGNTGC TCGTCTTCGC CGCCAGCTTC
0181 GTGTTCTCGT GGGCCTTCTT TGGATTCATC TGGTGGATCA TCGCCTACGC ACACAATGAT
0241 CTGGAGTACA CCAATCTCAA GAACCAGTCA CCCGATCTGG TGGCCAACAT GACGCACACG
0301 GTCTGCGTAA CACAGGTCTC CAATATGATG TCCGCCTTCC TGTACTCCGT GGAAACCCAG
0361 ACGACGATAG GCTATGGTAA TCGCTATGTG ACGGAGGAGT GCCCGGAGGC GATATTCACG
0421 ATGTGCATCC AGTGCATCAC GGGTGTCTTC ATCCAGGCGT TCATGGTGGG CATTGTGTTT
0481 GCCAAGTTGT CGCGTCCCAA GA |
in silico PCR Fragment |
0001 CCGGCAG-AC ACGTTTCAGT TCGCGGCGTG TTCGAAAACG TGTGGTCTTC AAGCACGGCG
0061 AGTGCAACGT -TGTGCAGGG AAATGTGGCC AAGAGACGGC GTCGCTATCT GCAGGACATC
0121 TTCACCACCC TGGTTGACGC CCAGTGGCGC TGGACGCTGC TCGTCTTCGC CGCCAGCTTC
0181 GTGTTCTCGT GGGCCTTCTT TGGATTCATC TGGTGGATCA TCGCCTACGC ACACAATGAT
0241 CTGGAGTACA CCAATCTCAA GAACCAGTCA CCCGATCTGG TGGCCAACAT AACGCACACG
0301 GTCTGCGTAA CACAGGTCTC CAATATGATG TCCGCCTTCC TGTACTCCGT GGAAACCCAG
0361 ACGACGATAG GCTATGGTAA TCGCTATGTG ACGGAGGAGT GCCCGGAGGC GATATTCACG
0421 ATGTGCATCC AGTGCATCAC GGGTGTCTTC ATCCAGGCGT TCATGGTGGG CATTGTGTTT
0481 GCCAAGTTGT CGCGTCCCAA GA |
Assemble Data |
6747R-2.IR_full 1 CCNGCAGNACACGTTTCAGTTCGCGGCGTGTTCGAAAACGTGTGGTCTTCAAGCACGGCG 60
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
6747R-2.in silico 1 CCGGCAG-ACACGTTTCAGTTCGCGGCGTGTTCGAAAACGTGTGGTCTTCAAGCACGGCG 60
6747R-2.IR_full 61 ANTGCAACGTNTGTGCAGGGAAATGTGGCCAAGAGACGGCGTCGNTATCTGCAGGACATC 120
| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
6747R-2.in silico 61 AGTGCAACGT-TGTGCAGGGAAATGTGGCCAAGAGACGGCGTCGCTATCTGCAGGACATC 120
6747R-2.IR_full 121 TTCACCACCCTGGTTGACGCCCAGTGGCGCTGGACGNTGCTCGTCTTCGCCGCCAGCTTC 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
6747R-2.in silico 121 TTCACCACCCTGGTTGACGCCCAGTGGCGCTGGACGCTGCTCGTCTTCGCCGCCAGCTTC 180
6747R-2.IR_full 181 GTGTTCTCGTGGGCCTTCTTTGGATTCATCTGGTGGATCATCGCCTACGCACACAATGAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6747R-2.in silico 181 GTGTTCTCGTGGGCCTTCTTTGGATTCATCTGGTGGATCATCGCCTACGCACACAATGAT 240
6747R-2.IR_full 241 CTGGAGTACACCAATCTCAAGAACCAGTCACCCGATCTGGTGGCCAACATGACGCACACG 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
6747R-2.in silico 241 CTGGAGTACACCAATCTCAAGAACCAGTCACCCGATCTGGTGGCCAACATAACGCACACG 300
6747R-2.IR_full 301 GTCTGCGTAACACAGGTCTCCAATATGATGTCCGCCTTCCTGTACTCCGTGGAAACCCAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6747R-2.in silico 301 GTCTGCGTAACACAGGTCTCCAATATGATGTCCGCCTTCCTGTACTCCGTGGAAACCCAG 360
6747R-2.IR_full 361 ACGACGATAGGCTATGGTAATCGCTATGTGACGGAGGAGTGCCCGGAGGCGATATTCACG 420
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6747R-2.in silico 361 ACGACGATAGGCTATGGTAATCGCTATGTGACGGAGGAGTGCCCGGAGGCGATATTCACG 420
6747R-2.IR_full 421 ATGTGCATCCAGTGCATCACGGGTGTCTTCATCCAGGCGTTCATGGTGGGCATTGTGTTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6747R-2.in silico 421 ATGTGCATCCAGTGCATCACGGGTGTCTTCATCCAGGCGTTCATGGTGGGCATTGTGTTT 480
6747R-2.IR_full 481 GCCAAGTTGTCGCGTCCCAAGA 502
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6747R-2.in silico 481 GCCAAGTTGTCGCGTCCCAAGA 502
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
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