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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
6711R-2 |
Symbol |
Taf2 |
Full Name |
TBP-associated factor 2 |
CG No |
CG6711 |
Old CG No |
CG6711 |
Synonyms |
dTAF[[II]]150, TAF150, TAF, TFIID, TAF[[II]], Taf150, TAF[II]150, TAF[[II]]150, TAF2, dTAFII150, dTAF150, TAFII150, CG6711, dTAF II 150, TafII150, Taf[[II]]150, Taf2 |
Accession No (Link to NCBI) |
NM_168387.1 |
Inserted Chr. |
ll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Ohhara Y, Nakamura A, Kato Y, Yamakawa-Kobayashi K. Chaperonin TRiC/CCT supports mitotic exit and entry into endocycle in Drosophila. PLoS Genet (2019) 15(4) e1008121
[
PubMed ID = 31034473
]
[
RRC reference
]
Nitta Y, Yamazaki D, Sugie A, Hiroi M, Tabata T. DISCO Interacting Protein 2 regulates axonal bifurcation and guidance of Drosophila mushroom body neurons. Dev Biol (2017) 421(2) 233-244
[
PubMed ID = 27908785
]
[
RRC reference
]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgTCACGGGCATCAGTTTCGAGC |
Primer Seq. 3' |
aatctagaggtaccATCGGCGAAACTGTCCACGCA |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 TCACGGGCAT CAGTTTCGAG CGGAGGAGCA TAATCGGCGT GGTCGAGCTG ACCATTGTGC
0061 CGAACAGCGA GAATCTGCGC CTGATACGCC TGAACGCCAA GCAGCTGAGA ATCTACAGCG
0121 TCGTTTTGAA TGATGTCTGC CAGGCGGATT TCACGTACTT CGATCCCTTC CAGAACATCT
0181 GCTACAAGGA GCCCAAGAGC CGCGCTCTGG NAGGTCTACT CCAAGCATCA TCTGACCGCC
0241 GCTCAGTACA CCGATCCCGA TGTGAACAAC GGCGAACTGC TCATCCAGGT TCCGCCCGAG
0301 GGCTACTCTA TGATCCAGGA GGGTCAGGGT CTGCGCATCC GCATCGAGTT CTCGTTGGAG
0361 AATCCCAAAT GCGGCGTACA TTTTGTCATA CCACCCGCTT CAACGGACGA GGAGACACAG
0421 ATGAACAGCT CGCATATGTT CACCAATTGC TATGAAAACT CCTCGAGATT GTGGTTTCCC
0481 TGCGTGGACA GTTTCGCCGA T |
in silico PCR Fragment |
0001 TCACGGGCAT CAGTTTCGAG CGGAGGAGCA TAATCGGCGT GGTCGAGCTG ACCATTGTGC
0061 CGAACAGCGA GAATCTGCGC CTGATACGCC TGAATGCCAA GCAGCTGAGA ATCTACAGCG
0121 TCGTTTTGAA CGATGTCTGC CAGGCGGATT TCACGTACTT CGATCCCTTC CAGAACATCT
0181 GCTACAAGGA GCACAAGAGC CGCGCGCTGG -AGGTCTACT CCAAGCATCA TCTGACCGCC
0241 GCCCAGTACA CCGATCCCGA TGTGAACAAC GGCGAACTGC TCATCCAGGT TCCGCCCGAG
0301 GGCTACTCTA TGATCCAGGA GGGTCAGGGT CTGCGCATCC GCATCGAGTT CTCGTTGGAG
0361 AATCCCAAAT GCGGCGTACA TTTTGTCATA CCACCCGCTT CAACGGACGA GGAGACACAG
0421 ATGAACAGCT CGCATATGTT CACCAATTGC TATGAAAACT CGTCGAGATT GTGGTTTCCC
0481 TGCGTGGACA GTTTCGCCGA T |
Assemble Data |
6711R-2.IR_full 1 TCACGGGCATCAGTTTCGAGCGGAGGAGCATAATCGGCGTGGTCGAGCTGACCATTGTGC 60
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6711R-2.in silico 1 TCACGGGCATCAGTTTCGAGCGGAGGAGCATAATCGGCGTGGTCGAGCTGACCATTGTGC 60
6711R-2.IR_full 61 CGAACAGCGAGAATCTGCGCCTGATACGCCTGAACGCCAAGCAGCTGAGAATCTACAGCG 120
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6711R-2.in silico 61 CGAACAGCGAGAATCTGCGCCTGATACGCCTGAATGCCAAGCAGCTGAGAATCTACAGCG 120
6711R-2.IR_full 121 TCGTTTTGAATGATGTCTGCCAGGCGGATTTCACGTACTTCGATCCCTTCCAGAACATCT 180
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6711R-2.in silico 121 TCGTTTTGAACGATGTCTGCCAGGCGGATTTCACGTACTTCGATCCCTTCCAGAACATCT 180
6711R-2.IR_full 181 GCTACAAGGAGCCCAAGAGCCGCGCTCTGGNAGGTCTACTCCAAGCATCATCTGACCGCC 240
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6711R-2.in silico 181 GCTACAAGGAGCACAAGAGCCGCGCGCTGG-AGGTCTACTCCAAGCATCATCTGACCGCC 240
6711R-2.IR_full 241 GCTCAGTACACCGATCCCGATGTGAACAACGGCGAACTGCTCATCCAGGTTCCGCCCGAG 300
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6711R-2.in silico 241 GCCCAGTACACCGATCCCGATGTGAACAACGGCGAACTGCTCATCCAGGTTCCGCCCGAG 300
6711R-2.IR_full 301 GGCTACTCTATGATCCAGGAGGGTCAGGGTCTGCGCATCCGCATCGAGTTCTCGTTGGAG 360
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6711R-2.in silico 301 GGCTACTCTATGATCCAGGAGGGTCAGGGTCTGCGCATCCGCATCGAGTTCTCGTTGGAG 360
6711R-2.IR_full 361 AATCCCAAATGCGGCGTACATTTTGTCATACCACCCGCTTCAACGGACGAGGAGACACAG 420
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6711R-2.in silico 361 AATCCCAAATGCGGCGTACATTTTGTCATACCACCCGCTTCAACGGACGAGGAGACACAG 420
6711R-2.IR_full 421 ATGAACAGCTCGCATATGTTCACCAATTGCTATGAAAACTCCTCGAGATTGTGGTTTCCC 480
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6711R-2.in silico 421 ATGAACAGCTCGCATATGTTCACCAATTGCTATGAAAACTCGTCGAGATTGTGGTTTCCC 480
6711R-2.IR_full 481 TGCGTGGACAGTTTCGCCGAT 501
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6711R-2.in silico 481 TGCGTGGACAGTTTCGCCGAT 501
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
3 |
NM_168387.1 |
CG6711-RA (Taf2), mRNA |
0 |
0 |
3 |
4 |
5 |
NM_141270.1 |
CG11999-RA (CG11999), mRNA |
0 |
0 |
3 |
4 |
5 |
NM_136570.2 |
CG8266-RA, transcript variant A (sec31), mRNA |
0 |
0 |
3 |
4 |
5 |
NM_165630.1 |
CG8266-RB, transcript variant B (sec31), mRNA |
0 |
0 |
2 |
3 |
5 |
NM_132239.1 |
CG1632-RA (CG1632), mRNA |
0 |
0 |
2 |
2 |
2 |
NM_142291.2 |
CG14896-RA (CG14896), mRNA |
0 |
0 |
1 |
5 |
8 |
NM_168293.1 |
CG32030-RA, transcript variant A (CG32030), mRNA |
0 |
0 |
1 |
5 |
7 |
NM_168294.1 |
CG32030-RB, transcript variant B (CG32030), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_137191.1 |
CG18625-RA (CG18625), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_079152.3 |
CG1007-RA (emc), mRNA |
0 |
0 |
1 |
2 |
7 |
NM_144238.1 |
CG14189-RA (CG14189), mRNA |
0 |
0 |
1 |
2 |
6 |
NM_080536.2 |
CG4013-RA, transcript variant A (Smr), mRNA |
0 |
0 |
1 |
2 |
6 |
NM_167334.1 |
CG4013-RB, transcript variant B (Smr), mRNA |
0 |
0 |
1 |
2 |
6 |
NM_167335.1 |
CG4013-RC, transcript variant C (Smr), mRNA |
0 |
0 |
1 |
2 |
5 |
NM_078523.2 |
CG2252-RB, transcript variant B (fs(1)h), mRNA |
0 |
0 |
1 |
2 |
5 |
NM_168228.1 |
CG32375-RA (CG32375), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_167144.2 |
CG2252-RA, transcript variant A (fs(1)h), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_206647.1 |
CG2252-RC, transcript variant C (fs(1)h), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_206646.1 |
CG2252-RD, transcript variant D (fs(1)h), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_206645.1 |
CG2252-RE, transcript variant E (fs(1)h), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_057819.3 |
CG9258-RA (nrv1), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_132625.1 |
CG4351-RA (CG4351), mRNA |
0 |
0 |
0 |
6 |
3 |
NM_139846.2 |
CG8602-RA (CG8602), mRNA |
0 |
0 |
0 |
4 |
12 |
NM_132010.1 |
CG17758-RA (CG17758), mRNA |
0 |
0 |
0 |
4 |
5 |
NM_139626.1 |
CG1273-RB (CG1273), mRNA |
0 |
0 |
0 |
4 |
5 |
NM_176712.1 |
CG33181-RA (CG33181), mRNA |
0 |
0 |
0 |
4 |
4 |
NM_136154.1 |
CG10631-RA (CG10631), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_139988.3 |
CG5978-RA (CG5978), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_001038831.1 |
CG40169-RA, transcript variant A (CC40169), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_001043123.1 |
CG32387-RC, transcript variant C (CG32387), mRNA |
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