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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 6711R-2 
 Symbol Taf2  Full Name TBP-associated factor 2 
 CG No CG6711  Old CG No CG6711 
 Synonyms dTAF[[II]]150, TAF150, TAF, TFIID, TAF[[II]], Taf150, TAF[II]150, TAF[[II]]150, TAF2, dTAFII150, dTAF150, TAFII150, CG6711, dTAF II 150, TafII150, Taf[[II]]150, Taf2 
 Accession No (Link to NCBI) NM_168387.1 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Ohhara Y, Nakamura A, Kato Y, Yamakawa-Kobayashi K.
Chaperonin TRiC/CCT supports mitotic exit and entry into endocycle in Drosophila.
PLoS Genet (2019) 15(4) e1008121 [ PubMed ID = 31034473 ] [ RRC reference ]

Nitta Y, Yamazaki D, Sugie A, Hiroi M, Tabata T.
DISCO Interacting Protein 2 regulates axonal bifurcation and guidance of Drosophila mushroom body neurons.
Dev Biol (2017) 421(2) 233-244 [ PubMed ID = 27908785 ] [ RRC reference ]

Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTCACGGGCATCAGTTTCGAGC 
 Primer Seq. 3'
aatctagaggtaccATCGGCGAAACTGTCCACGCA 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 TCACGGGCAT CAGTTTCGAG CGGAGGAGCA TAATCGGCGT GGTCGAGCTG ACCATTGTGC 
0061 CGAACAGCGA GAATCTGCGC CTGATACGCC TGAACGCCAA GCAGCTGAGA ATCTACAGCG 
0121 TCGTTTTGAA TGATGTCTGC CAGGCGGATT TCACGTACTT CGATCCCTTC CAGAACATCT 
0181 GCTACAAGGA GCCCAAGAGC CGCGCTCTGG NAGGTCTACT CCAAGCATCA TCTGACCGCC 
0241 GCTCAGTACA CCGATCCCGA TGTGAACAAC GGCGAACTGC TCATCCAGGT TCCGCCCGAG 
0301 GGCTACTCTA TGATCCAGGA GGGTCAGGGT CTGCGCATCC GCATCGAGTT CTCGTTGGAG 
0361 AATCCCAAAT GCGGCGTACA TTTTGTCATA CCACCCGCTT CAACGGACGA GGAGACACAG 
0421 ATGAACAGCT CGCATATGTT CACCAATTGC TATGAAAACT CCTCGAGATT GTGGTTTCCC 
0481 TGCGTGGACA GTTTCGCCGA T 
 in silico PCR Fragment
0001 TCACGGGCAT CAGTTTCGAG CGGAGGAGCA TAATCGGCGT GGTCGAGCTG ACCATTGTGC 
0061 CGAACAGCGA GAATCTGCGC CTGATACGCC TGAATGCCAA GCAGCTGAGA ATCTACAGCG 
0121 TCGTTTTGAA CGATGTCTGC CAGGCGGATT TCACGTACTT CGATCCCTTC CAGAACATCT 
0181 GCTACAAGGA GCACAAGAGC CGCGCGCTGG -AGGTCTACT CCAAGCATCA TCTGACCGCC 
0241 GCCCAGTACA CCGATCCCGA TGTGAACAAC GGCGAACTGC TCATCCAGGT TCCGCCCGAG 
0301 GGCTACTCTA TGATCCAGGA GGGTCAGGGT CTGCGCATCC GCATCGAGTT CTCGTTGGAG 
0361 AATCCCAAAT GCGGCGTACA TTTTGTCATA CCACCCGCTT CAACGGACGA GGAGACACAG 
0421 ATGAACAGCT CGCATATGTT CACCAATTGC TATGAAAACT CGTCGAGATT GTGGTTTCCC 
0481 TGCGTGGACA GTTTCGCCGA T 
 Assemble Data

6711R-2.IR_full       1   TCACGGGCATCAGTTTCGAGCGGAGGAGCATAATCGGCGTGGTCGAGCTGACCATTGTGC 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6711R-2.in silico     1   TCACGGGCATCAGTTTCGAGCGGAGGAGCATAATCGGCGTGGTCGAGCTGACCATTGTGC 60


6711R-2.IR_full       61  CGAACAGCGAGAATCTGCGCCTGATACGCCTGAACGCCAAGCAGCTGAGAATCTACAGCG 120
                          |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
6711R-2.in silico     61  CGAACAGCGAGAATCTGCGCCTGATACGCCTGAATGCCAAGCAGCTGAGAATCTACAGCG 120


6711R-2.IR_full       121 TCGTTTTGAATGATGTCTGCCAGGCGGATTTCACGTACTTCGATCCCTTCCAGAACATCT 180
                          |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
6711R-2.in silico     121 TCGTTTTGAACGATGTCTGCCAGGCGGATTTCACGTACTTCGATCCCTTCCAGAACATCT 180


6711R-2.IR_full       181 GCTACAAGGAGCCCAAGAGCCGCGCTCTGGNAGGTCTACTCCAAGCATCATCTGACCGCC 240
                          |||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||
6711R-2.in silico     181 GCTACAAGGAGCACAAGAGCCGCGCGCTGG-AGGTCTACTCCAAGCATCATCTGACCGCC 240


6711R-2.IR_full       241 GCTCAGTACACCGATCCCGATGTGAACAACGGCGAACTGCTCATCCAGGTTCCGCCCGAG 300
                          || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6711R-2.in silico     241 GCCCAGTACACCGATCCCGATGTGAACAACGGCGAACTGCTCATCCAGGTTCCGCCCGAG 300


6711R-2.IR_full       301 GGCTACTCTATGATCCAGGAGGGTCAGGGTCTGCGCATCCGCATCGAGTTCTCGTTGGAG 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6711R-2.in silico     301 GGCTACTCTATGATCCAGGAGGGTCAGGGTCTGCGCATCCGCATCGAGTTCTCGTTGGAG 360


6711R-2.IR_full       361 AATCCCAAATGCGGCGTACATTTTGTCATACCACCCGCTTCAACGGACGAGGAGACACAG 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6711R-2.in silico     361 AATCCCAAATGCGGCGTACATTTTGTCATACCACCCGCTTCAACGGACGAGGAGACACAG 420


6711R-2.IR_full       421 ATGAACAGCTCGCATATGTTCACCAATTGCTATGAAAACTCCTCGAGATTGTGGTTTCCC 480
                          ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
6711R-2.in silico     421 ATGAACAGCTCGCATATGTTCACCAATTGCTATGAAAACTCGTCGAGATTGTGGTTTCCC 480


6711R-2.IR_full       481 TGCGTGGACAGTTTCGCCGAT 501
                          |||||||||||||||||||||
6711R-2.in silico     481 TGCGTGGACAGTTTCGCCGAT 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_168387.1  CG6711-RA (Taf2), mRNA 
0   NM_141270.1  CG11999-RA (CG11999), mRNA 
0   NM_136570.2  CG8266-RA, transcript variant A (sec31), mRNA 
0   NM_165630.1  CG8266-RB, transcript variant B (sec31), mRNA 
0   NM_132239.1  CG1632-RA (CG1632), mRNA 
0   NM_142291.2  CG14896-RA (CG14896), mRNA 
0   NM_168293.1  CG32030-RA, transcript variant A (CG32030), mRNA 
0   NM_168294.1  CG32030-RB, transcript variant B (CG32030), mRNA 
0   NM_137191.1  CG18625-RA (CG18625), mRNA 
0   NM_079152.3  CG1007-RA (emc), mRNA 
0   NM_144238.1  CG14189-RA (CG14189), mRNA 
0   NM_080536.2  CG4013-RA, transcript variant A (Smr), mRNA 
0   NM_167334.1  CG4013-RB, transcript variant B (Smr), mRNA 
0   NM_167335.1  CG4013-RC, transcript variant C (Smr), mRNA 
0   NM_078523.2  CG2252-RB, transcript variant B (fs(1)h), mRNA 
0   NM_168228.1  CG32375-RA (CG32375), mRNA 
0   NM_167144.2  CG2252-RA, transcript variant A (fs(1)h), mRNA 
0   NM_206647.1  CG2252-RC, transcript variant C (fs(1)h), mRNA 
0   NM_206646.1  CG2252-RD, transcript variant D (fs(1)h), mRNA 
0   NM_206645.1  CG2252-RE, transcript variant E (fs(1)h), mRNA 
0   NM_057819.3  CG9258-RA (nrv1), mRNA 
0   NM_132625.1  CG4351-RA (CG4351), mRNA 
0   NM_139846.2  CG8602-RA (CG8602), mRNA 
0   12  NM_132010.1  CG17758-RA (CG17758), mRNA 
0   NM_139626.1  CG1273-RB (CG1273), mRNA 
0   NM_176712.1  CG33181-RA (CG33181), mRNA 
0   NM_136154.1  CG10631-RA (CG10631), mRNA 
0   NM_139988.3  CG5978-RA (CG5978), mRNA 
0   NM_001038831.1  CG40169-RA, transcript variant A (CC40169), mRNA 
0   NM_001043123.1  CG32387-RC, transcript variant C (CG32387), mRNA 

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