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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
6647R-3 |
Symbol |
porin |
Full Name |
porin |
CG No |
CG6647 |
Old CG No |
CG6647 |
Synonyms |
CG6647, DmPorin1, POR-1, VDAC, l(2)k05123, DmVDAC, Vdac, anon-WO02059370.56, porin |
Accession No (Link to NCBI) |
NM_057465.3 |
Inserted Chr. |
ll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Hosono C, Matsuda R, Adryan B, Samakovlis C. Transient junction anisotropies orient annular cell polarization in the Drosophila airway tubes. Nat Cell Biol (2015) 17(12) 1569-76
[
PubMed ID = 26551273
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgTCCATCATACAGCGATTTGGG |
Primer Seq. 3' |
aatctagaggtaccGGGCAAAGTTGTTGGTGGTCA |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 TCCATCATAC AGCGATTTGG GCAAACAGGC TCGCGACATC TTCAGCAAAG GCTACAACTT
0061 TGGCCTGTGG AAGCTCGATC TGAAGACTAA GACCTCGTCG GGCATTGAGT TCAACACAGC
0121 CGGACACTCC AACCAGGAGT CTGGAAAGGT CTTCGGCTCC CTGGAGACCA AGTACAAGGT
0181 CAAGGACTAC GGCCTGACCC TCACCGAGAA GTGGAACACA GACAACACGC TGTTCACCGA
0241 GGTTGCTGTC CAGGATCAGC TCCTCGAGAG TCTGAAGCTG TCCCTGGAGG GCAACTTTGC
0301 TCCTCAGTCT GGAAACAAGA ACGGCAAGTT CAANGGTTGC CTACGGCCAT GAGAACGTCA
0361 AGGCCGATTC GGATGTGAAC ATTGATCTGA AGGGCCCCTT GATCAATGCC TCTGCCGTGC
0421 TTGGCTACCA GGGATGGTTG GCCGGCTACC AGACCGCATT TGACACACAA CAGTCCAAGC
0481 TGACCACCAA CAACTTTGCC C |
in silico PCR Fragment |
0001 TCCATCATAC AGCGATTTGG GCAAACAGGC TCGCGACATC TTCAGCAAAG GCTACAACTT
0061 TGGCCTGTGG AAGCTCGATC TGAAGACTAA GACCTCGTCG GGCATTGAGT TCAACACAGC
0121 CGGACACTCC AACCAGGAGT CTGGAAAGGT CTTCGGCTCC CTGGAGACCA AGTACAAGGT
0181 CAAGGACTAC GGCCTGACCC TCACCGAGAA GTGGAACACA GACAACACGC TGTTCACCGA
0241 GGTTGCTGTC CAGGATCAGC TCCTCGAGGG TCTGAAGCTG TCCCTGGAGG GCAACTTTGC
0301 TCCTCAGTCT GGAAACAAGA ACGGCAAGTT CAA-GGTTGC CTACGGCCAT GAGAACGTCA
0361 AGGCCGATTC GGATGTGAAC ATTGATCTGA AGGGCCCCTT GATCAATGCC TCTGCCGTGC
0421 TTGGCTACCA GGGATGGTTG GCCGGCTACC AGACCGCATT TGACACACAA CAGTCCAAGC
0481 TGACCACCAA CAACTTTGCC C |
Assemble Data |
6647R-3.IR_full 1 TCCATCATACAGCGATTTGGGCAAACAGGCTCGCGACATCTTCAGCAAAGGCTACAACTT 60
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6647R-3.in silico 1 TCCATCATACAGCGATTTGGGCAAACAGGCTCGCGACATCTTCAGCAAAGGCTACAACTT 60
6647R-3.IR_full 61 TGGCCTGTGGAAGCTCGATCTGAAGACTAAGACCTCGTCGGGCATTGAGTTCAACACAGC 120
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6647R-3.in silico 61 TGGCCTGTGGAAGCTCGATCTGAAGACTAAGACCTCGTCGGGCATTGAGTTCAACACAGC 120
6647R-3.IR_full 121 CGGACACTCCAACCAGGAGTCTGGAAAGGTCTTCGGCTCCCTGGAGACCAAGTACAAGGT 180
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6647R-3.in silico 121 CGGACACTCCAACCAGGAGTCTGGAAAGGTCTTCGGCTCCCTGGAGACCAAGTACAAGGT 180
6647R-3.IR_full 181 CAAGGACTACGGCCTGACCCTCACCGAGAAGTGGAACACAGACAACACGCTGTTCACCGA 240
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6647R-3.in silico 181 CAAGGACTACGGCCTGACCCTCACCGAGAAGTGGAACACAGACAACACGCTGTTCACCGA 240
6647R-3.IR_full 241 GGTTGCTGTCCAGGATCAGCTCCTCGAGAGTCTGAAGCTGTCCCTGGAGGGCAACTTTGC 300
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6647R-3.in silico 241 GGTTGCTGTCCAGGATCAGCTCCTCGAGGGTCTGAAGCTGTCCCTGGAGGGCAACTTTGC 300
6647R-3.IR_full 301 TCCTCAGTCTGGAAACAAGAACGGCAAGTTCAANGGTTGCCTACGGCCATGAGAACGTCA 360
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6647R-3.in silico 301 TCCTCAGTCTGGAAACAAGAACGGCAAGTTCAA-GGTTGCCTACGGCCATGAGAACGTCA 360
6647R-3.IR_full 361 AGGCCGATTCGGATGTGAACATTGATCTGAAGGGCCCCTTGATCAATGCCTCTGCCGTGC 420
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6647R-3.in silico 361 AGGCCGATTCGGATGTGAACATTGATCTGAAGGGCCCCTTGATCAATGCCTCTGCCGTGC 420
6647R-3.IR_full 421 TTGGCTACCAGGGATGGTTGGCCGGCTACCAGACCGCATTTGACACACAACAGTCCAAGC 480
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6647R-3.in silico 421 TTGGCTACCAGGGATGGTTGGCCGGCTACCAGACCGCATTTGACACACAACAGTCCAAGC 480
6647R-3.IR_full 481 TGACCACCAACAACTTTGCCC 501
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6647R-3.in silico 481 TGACCACCAACAACTTTGCCC 501
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
3 |
NM_057465.3 |
CG6647-RA, transcript variant A (porin), mRNA |
100 |
482 |
0 |
0 |
3 |
NM_001038810.1 |
CG6647-RC, transcript variant C (porin), mRNA |
100 |
482 |
0 |
0 |
1 |
NM_134283.2 |
CG6647-RB, transcript variant B (porin), mRNA |
0.2 |
1 |
2 |
5 |
5 |
NM_001038976.1 |
CG4637-RB, transcript variant B (hh), mRNA |
0.2 |
1 |
2 |
5 |
5 |
NM_079735.3 |
CG4637-RA, transcript variant A (hh), mRNA |
0 |
0 |
3 |
3 |
9 |
NM_078691.2 |
CG12532-RA (Bap), mRNA |
0 |
0 |
2 |
5 |
5 |
NM_138143.1 |
CG12851-RA (CG12851), mRNA |
0 |
0 |
2 |
4 |
2 |
NM_079724.2 |
CG7070-RA, transcript variant A (PyK), mRNA |
0 |
0 |
2 |
4 |
2 |
NM_170004.1 |
CG7070-RB, transcript variant B (PyK), mRNA |
0 |
0 |
2 |
3 |
2 |
NM_142598.1 |
CG17190-RA (CG17190), mRNA |
0 |
0 |
2 |
2 |
5 |
NM_167170.1 |
CG10701-RC, transcript variant C (Moe), mRNA |
0 |
0 |
2 |
2 |
5 |
NM_167169.1 |
CG10701-RA, transcript variant A (Moe), mRNA |
0 |
0 |
2 |
2 |
5 |
NM_167168.1 |
CG10701-RB, transcript variant B (Moe), mRNA |
0 |
0 |
2 |
2 |
5 |
NM_080343.2 |
CG10701-RD, transcript variant D (Moe), mRNA |
0 |
0 |
2 |
2 |
5 |
NM_206664.1 |
CG10701-RJ, transcript variant J (Moe), mRNA |
0 |
0 |
2 |
2 |
5 |
NM_206665.1 |
CG10701-RI, transcript variant I (Moe), mRNA |
0 |
0 |
2 |
2 |
5 |
NM_206669.1 |
CG10701-RE, transcript variant E (Moe), mRNA |
0 |
0 |
2 |
2 |
5 |
NM_206666.1 |
CG10701-RH, transcript variant H (Moe), mRNA |
0 |
0 |
2 |
2 |
5 |
NM_206668.1 |
CG10701-RF, transcript variant F (Moe), mRNA |
0 |
0 |
2 |
2 |
5 |
NM_206667.1 |
CG10701-RG, transcript variant G (Moe), mRNA |
0 |
0 |
1 |
6 |
4 |
NM_079115.2 |
CG3318-RA, transcript variant A (Dat), mRNA |
0 |
0 |
1 |
6 |
4 |
NM_206212.1 |
CG3318-RB, transcript variant B (Dat), mRNA |
0 |
0 |
1 |
4 |
2 |
NM_132543.1 |
CG10362-RA (CG10362), mRNA |
0 |
0 |
1 |
3 |
6 |
NM_132074.1 |
CG3585-RA (CG3585), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_142331.1 |
CG4009-RA (CG4009), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_078676.3 |
CG6223-RA (betaCop), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_133114.2 |
CG32541-RA (CG32541), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_140329.2 |
CG4107-RA (Pcaf), mRNA |
0 |
0 |
1 |
2 |
5 |
NM_135737.2 |
CG5780-RA (CG5780), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_132401.1 |
CG12640-RA (CG12640), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
N |
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++ |
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DB |
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+ |
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DC |
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++ |
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DM |
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+ |
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VM |
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+ |
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VB |
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