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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 6647R-3 
 Symbol porin  Full Name porin 
 CG No CG6647  Old CG No CG6647 
 Synonyms CG6647, DmPorin1, POR-1, VDAC, l(2)k05123, DmVDAC, Vdac, anon-WO02059370.56, porin 
 Accession No (Link to NCBI) NM_057465.3 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Hosono C, Matsuda R, Adryan B, Samakovlis C.
Transient junction anisotropies orient annular cell polarization in the Drosophila airway tubes.
Nat Cell Biol (2015) 17(12) 1569-76 [ PubMed ID = 26551273 ] [ RRC reference ]

Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTCCATCATACAGCGATTTGGG 
 Primer Seq. 3'
aatctagaggtaccGGGCAAAGTTGTTGGTGGTCA 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 TCCATCATAC AGCGATTTGG GCAAACAGGC TCGCGACATC TTCAGCAAAG GCTACAACTT 
0061 TGGCCTGTGG AAGCTCGATC TGAAGACTAA GACCTCGTCG GGCATTGAGT TCAACACAGC 
0121 CGGACACTCC AACCAGGAGT CTGGAAAGGT CTTCGGCTCC CTGGAGACCA AGTACAAGGT 
0181 CAAGGACTAC GGCCTGACCC TCACCGAGAA GTGGAACACA GACAACACGC TGTTCACCGA 
0241 GGTTGCTGTC CAGGATCAGC TCCTCGAGAG TCTGAAGCTG TCCCTGGAGG GCAACTTTGC 
0301 TCCTCAGTCT GGAAACAAGA ACGGCAAGTT CAANGGTTGC CTACGGCCAT GAGAACGTCA 
0361 AGGCCGATTC GGATGTGAAC ATTGATCTGA AGGGCCCCTT GATCAATGCC TCTGCCGTGC 
0421 TTGGCTACCA GGGATGGTTG GCCGGCTACC AGACCGCATT TGACACACAA CAGTCCAAGC 
0481 TGACCACCAA CAACTTTGCC C 
 in silico PCR Fragment
0001 TCCATCATAC AGCGATTTGG GCAAACAGGC TCGCGACATC TTCAGCAAAG GCTACAACTT 
0061 TGGCCTGTGG AAGCTCGATC TGAAGACTAA GACCTCGTCG GGCATTGAGT TCAACACAGC 
0121 CGGACACTCC AACCAGGAGT CTGGAAAGGT CTTCGGCTCC CTGGAGACCA AGTACAAGGT 
0181 CAAGGACTAC GGCCTGACCC TCACCGAGAA GTGGAACACA GACAACACGC TGTTCACCGA 
0241 GGTTGCTGTC CAGGATCAGC TCCTCGAGGG TCTGAAGCTG TCCCTGGAGG GCAACTTTGC 
0301 TCCTCAGTCT GGAAACAAGA ACGGCAAGTT CAA-GGTTGC CTACGGCCAT GAGAACGTCA 
0361 AGGCCGATTC GGATGTGAAC ATTGATCTGA AGGGCCCCTT GATCAATGCC TCTGCCGTGC 
0421 TTGGCTACCA GGGATGGTTG GCCGGCTACC AGACCGCATT TGACACACAA CAGTCCAAGC 
0481 TGACCACCAA CAACTTTGCC C 
 Assemble Data

6647R-3.IR_full       1   TCCATCATACAGCGATTTGGGCAAACAGGCTCGCGACATCTTCAGCAAAGGCTACAACTT 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6647R-3.in silico     1   TCCATCATACAGCGATTTGGGCAAACAGGCTCGCGACATCTTCAGCAAAGGCTACAACTT 60


6647R-3.IR_full       61  TGGCCTGTGGAAGCTCGATCTGAAGACTAAGACCTCGTCGGGCATTGAGTTCAACACAGC 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6647R-3.in silico     61  TGGCCTGTGGAAGCTCGATCTGAAGACTAAGACCTCGTCGGGCATTGAGTTCAACACAGC 120


6647R-3.IR_full       121 CGGACACTCCAACCAGGAGTCTGGAAAGGTCTTCGGCTCCCTGGAGACCAAGTACAAGGT 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6647R-3.in silico     121 CGGACACTCCAACCAGGAGTCTGGAAAGGTCTTCGGCTCCCTGGAGACCAAGTACAAGGT 180


6647R-3.IR_full       181 CAAGGACTACGGCCTGACCCTCACCGAGAAGTGGAACACAGACAACACGCTGTTCACCGA 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6647R-3.in silico     181 CAAGGACTACGGCCTGACCCTCACCGAGAAGTGGAACACAGACAACACGCTGTTCACCGA 240


6647R-3.IR_full       241 GGTTGCTGTCCAGGATCAGCTCCTCGAGAGTCTGAAGCTGTCCCTGGAGGGCAACTTTGC 300
                          |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
6647R-3.in silico     241 GGTTGCTGTCCAGGATCAGCTCCTCGAGGGTCTGAAGCTGTCCCTGGAGGGCAACTTTGC 300


6647R-3.IR_full       301 TCCTCAGTCTGGAAACAAGAACGGCAAGTTCAANGGTTGCCTACGGCCATGAGAACGTCA 360
                          ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
6647R-3.in silico     301 TCCTCAGTCTGGAAACAAGAACGGCAAGTTCAA-GGTTGCCTACGGCCATGAGAACGTCA 360


6647R-3.IR_full       361 AGGCCGATTCGGATGTGAACATTGATCTGAAGGGCCCCTTGATCAATGCCTCTGCCGTGC 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6647R-3.in silico     361 AGGCCGATTCGGATGTGAACATTGATCTGAAGGGCCCCTTGATCAATGCCTCTGCCGTGC 420


6647R-3.IR_full       421 TTGGCTACCAGGGATGGTTGGCCGGCTACCAGACCGCATTTGACACACAACAGTCCAAGC 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6647R-3.in silico     421 TTGGCTACCAGGGATGGTTGGCCGGCTACCAGACCGCATTTGACACACAACAGTCCAAGC 480


6647R-3.IR_full       481 TGACCACCAACAACTTTGCCC 501
                          |||||||||||||||||||||
6647R-3.in silico     481 TGACCACCAACAACTTTGCCC 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_057465.3  CG6647-RA, transcript variant A (porin), mRNA 
100   482  NM_001038810.1  CG6647-RC, transcript variant C (porin), mRNA 
100   482  NM_134283.2  CG6647-RB, transcript variant B (porin), mRNA 
0.2   NM_001038976.1  CG4637-RB, transcript variant B (hh), mRNA 
0.2   NM_079735.3  CG4637-RA, transcript variant A (hh), mRNA 
0   NM_078691.2  CG12532-RA (Bap), mRNA 
0   NM_138143.1  CG12851-RA (CG12851), mRNA 
0   NM_079724.2  CG7070-RA, transcript variant A (PyK), mRNA 
0   NM_170004.1  CG7070-RB, transcript variant B (PyK), mRNA 
0   NM_142598.1  CG17190-RA (CG17190), mRNA 
0   NM_167170.1  CG10701-RC, transcript variant C (Moe), mRNA 
0   NM_167169.1  CG10701-RA, transcript variant A (Moe), mRNA 
0   NM_167168.1  CG10701-RB, transcript variant B (Moe), mRNA 
0   NM_080343.2  CG10701-RD, transcript variant D (Moe), mRNA 
0   NM_206664.1  CG10701-RJ, transcript variant J (Moe), mRNA 
0   NM_206665.1  CG10701-RI, transcript variant I (Moe), mRNA 
0   NM_206669.1  CG10701-RE, transcript variant E (Moe), mRNA 
0   NM_206666.1  CG10701-RH, transcript variant H (Moe), mRNA 
0   NM_206668.1  CG10701-RF, transcript variant F (Moe), mRNA 
0   NM_206667.1  CG10701-RG, transcript variant G (Moe), mRNA 
0   NM_079115.2  CG3318-RA, transcript variant A (Dat), mRNA 
0   NM_206212.1  CG3318-RB, transcript variant B (Dat), mRNA 
0   NM_132543.1  CG10362-RA (CG10362), mRNA 
0   NM_132074.1  CG3585-RA (CG3585), mRNA 
0   NM_142331.1  CG4009-RA (CG4009), mRNA 
0   NM_078676.3  CG6223-RA (betaCop), mRNA 
0   NM_133114.2  CG32541-RA (CG32541), mRNA 
0   NM_140329.2  CG4107-RA (Pcaf), mRNA 
0   NM_135737.2  CG5780-RA (CG5780), mRNA 
0   NM_132401.1  CG12640-RA (CG12640), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
 
DC
+- 
DM
 
VM
 
VB
 
Caspase-3 signal
N
++ 
DB
DC
++ 
DM
VM
VB
 
Dcompartment   Penetrance
     

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