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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 6605R-1 
 Symbol BicD  Full Name Bicaudal D 
 CG No CG6605  Old CG No CG6605 
 Synonyms BicD, Bic-D, BIC-D, unnamed, Bic[D], anon-EST:fe2A11, CG6605 
 Accession No (Link to NCBI) NM_165220.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Cho Y, Lai CM, Lin KY, Hsu HJ.
A Targeted RNAi Screen Reveals Drosophila Female-Sterile Genes That Control the Size of Germline Stem Cell Niche During Development.
G3 (Bethesda) (2018) 8(7) 2345-2354 [ PubMed ID = 29764959 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGAGAACGAGCTTAAGCAACTG 
 Primer Seq. 3'
aatctagaggtaccGCGTTGTCTTCCATGTTGCTG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 GAGAACGAGC TTAAGCAACT GCGCCATGAG TTGGAAAGGG TTCGCAATGA GCGCGATAGG 
0061 ATGCTGCAGG AGAACTCGGA TTTTGGGCGG GACAAGAGCG ACAGNGAGGC GGATCGCCTA 
0121 CGCCTCAAGT CCGAGCTGAA GGACCTTAAG TTCCGGGAGA CGCGTATGCT TAGCGAATAC 
0181 TCGGAGCTGG AGGAGGAGAA CATATCGCTG CAAAAGCAGG TCTCCAGCCT GCGCAGCTCA 
0241 CAGGTGGAAT TTGAAGGTGC CAAACACGAG ATCCGTCGTC TCACTGAAGA AGTTGAGCTG 
0301 TTGAATCAAC AGGTCGATGA GCTCGCCAAT CTTNAAAAAA ATTGCCGAAA AACAAATGGA 
0361 GGAAGCGCTA GAGACCTTAC AGGGTGAACG TGAGGCGAAA TATGCATTGA AGAAGGAACT 
0421 GGATGGCCAC TTGAACCGTG AGTCTATGTA CCACATCAGC AACCTCGCCT ACAGCATACG 
0481 CAGCAACATG GGAAGATCAA CGC 
 in silico PCR Fragment
0001 GAGAACGAGC TTAAGCAACT GCGCCATGAG TTGGAAAGGG TTCGCAATGA GCGCGATAGG 
0061 ATGCTGCAGG AGAACTCGGA TTTTGGGCGG GACAAGAGCG ACAGCGAGGC GGATCGCCTA 
0121 CGCCTCAAGT CCGAGCTGAA GGACCTTAAG TTCCGGGAGA CGCGTATGCT TAGCGAATAC 
0181 TCGGAGCTGG AGGAGGAGAA CATATCGCTG CAAAAGCAGG TCTCCAGCCT GCGCAGCTCA 
0241 CAGGTGGAAT TTGAAGGTGC CAAACACGAG ATCCGTCGTC TCACTGAAGA AGTTGAGCTG 
0301 TTGAATCAAC AGGTCGATGA GCTCGCCAAT CTT-AAAAAA ATTGCCGAAA AACAAATGGA 
0361 GGAAGCGCTA GAGACCTTAC AGGGTGAACG TGAGGCGAAA TATGCATTGA AGAAGGAACT 
0421 GGATGGCCAC TTGAACCGTG AGTCTATGTA CCACATCAGC AACCTCGCCT ACAGCATACG 
0481 CAGCAACAT- GGAAGA-CAA CGC 
 Assemble Data

6605R-1.IR_full       1   GAGAACGAGCTTAAGCAACTGCGCCATGAGTTGGAAAGGGTTCGCAATGAGCGCGATAGG 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6605R-1.in silico     1   GAGAACGAGCTTAAGCAACTGCGCCATGAGTTGGAAAGGGTTCGCAATGAGCGCGATAGG 60


6605R-1.IR_full       61  ATGCTGCAGGAGAACTCGGATTTTGGGCGGGACAAGAGCGACAGNGAGGCGGATCGCCTA 120
                          |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
6605R-1.in silico     61  ATGCTGCAGGAGAACTCGGATTTTGGGCGGGACAAGAGCGACAGCGAGGCGGATCGCCTA 120


6605R-1.IR_full       121 CGCCTCAAGTCCGAGCTGAAGGACCTTAAGTTCCGGGAGACGCGTATGCTTAGCGAATAC 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6605R-1.in silico     121 CGCCTCAAGTCCGAGCTGAAGGACCTTAAGTTCCGGGAGACGCGTATGCTTAGCGAATAC 180


6605R-1.IR_full       181 TCGGAGCTGGAGGAGGAGAACATATCGCTGCAAAAGCAGGTCTCCAGCCTGCGCAGCTCA 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6605R-1.in silico     181 TCGGAGCTGGAGGAGGAGAACATATCGCTGCAAAAGCAGGTCTCCAGCCTGCGCAGCTCA 240


6605R-1.IR_full       241 CAGGTGGAATTTGAAGGTGCCAAACACGAGATCCGTCGTCTCACTGAAGAAGTTGAGCTG 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6605R-1.in silico     241 CAGGTGGAATTTGAAGGTGCCAAACACGAGATCCGTCGTCTCACTGAAGAAGTTGAGCTG 300


6605R-1.IR_full       301 TTGAATCAACAGGTCGATGAGCTCGCCAATCTTNAAAAAAATTGCCGAAAAACAAATGGA 360
                          ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
6605R-1.in silico     301 TTGAATCAACAGGTCGATGAGCTCGCCAATCTT-AAAAAAATTGCCGAAAAACAAATGGA 360


6605R-1.IR_full       361 GGAAGCGCTAGAGACCTTACAGGGTGAACGTGAGGCGAAATATGCATTGAAGAAGGAACT 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6605R-1.in silico     361 GGAAGCGCTAGAGACCTTACAGGGTGAACGTGAGGCGAAATATGCATTGAAGAAGGAACT 420


6605R-1.IR_full       421 GGATGGCCACTTGAACCGTGAGTCTATGTACCACATCAGCAACCTCGCCTACAGCATACG 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6605R-1.in silico     421 GGATGGCCACTTGAACCGTGAGTCTATGTACCACATCAGCAACCTCGCCTACAGCATACG 480


6605R-1.IR_full       481 CAGCAACATGGGAAGATCAACGC 503
                          ||||||||| |||||| ||||||
6605R-1.in silico     481 CAGCAACAT-GGAAGA-CAACGC 503

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_165220.1  CG6605-RA (BicD), mRNA 
0   NM_135450.1  CG17855-RA (CG17855), mRNA 
0   NM_137688.1  CG3216-RA, transcript variant A (CG3216), mRNA 
0   NM_166415.1  CG3216-RB, transcript variant B (CG3216), mRNA 
0   NM_140497.2  CG6869-RA (FucTA), mRNA 
0   NM_168863.1  CG32425-RC, transcript variant C (CG32425), mRNA 
0   NM_168861.1  CG32425-RE, transcript variant E (CG32425), mRNA 
0   NM_168860.1  CG32425-RA, transcript variant A (CG32425), mRNA 
0   NM_134833.4  CG9866-RA, transcript variant A (CG9866), mRNA 
0   NM_001014670.2  CG5462-RH, transcript variant H (scrib), mRNA 
0   NM_164481.1  CG9866-RB, transcript variant B (CG9866), mRNA 
0   NM_137455.4  CG10915-RA (CG10915), mRNA 
0   NM_079258.2  CG5939-RA, transcript variant A (Prm), mRNA 
0   NM_168291.1  CG5939-RC, transcript variant C (Prm), mRNA 
0   NM_132584.2  CG32654-RC (CG32654), mRNA 
0   NM_168290.1  CG5939-RB, transcript variant B (Prm), mRNA 
0   NM_168292.1  CG5939-RD, transcript variant D (Prm), mRNA 
0   NM_141300.1  CG2919-RA (CG2919), mRNA 
0   NM_132335.2  CG12139-RB (CG12139), mRNA 
0   NM_136542.1  CG30361-RA, transcript variant A (mXr), mRNA 
0   NM_165609.1  CG30361-RB, transcript variant B (mXr), mRNA 
0   NM_144119.2  CG33466-RA (Fs), mRNA 
0   NM_206058.1  CG30361-RC, transcript variant C (mXr), mRNA 
0   NM_079475.2  CG32443-RA (Pc), mRNA 
0   NM_206226.1  CG12038-RB, transcript variant B (CG12038), mRNA 
0   NM_206227.1  CG12038-RA, transcript variant A (CG12038), mRNA 
0   NM_132958.1  CG12433-RA (CG12433), mRNA 
0   NM_143064.1  CG6369-RA (Smg6), mRNA 
0   NM_137882.1  CG13531-RB (CG13531), mRNA 
0   NM_001031964.1  CG13702-RC, transcript variant C (AlCR2), mRNA 

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