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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
discarded
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
6538R-3 |
Symbol |
TfIIFbeta |
Full Name |
Transcription factor TFIIFbeta |
CG No |
CG6538 |
Old CG No |
CG6538 |
Synonyms |
RAP30, TFIIF, F[[S]], CG6538, dTFIIF30, TfIIFbeta, TFIIFbeta, l(3)j3C1, TfIIF |
Accession No (Link to NCBI) |
NM_079581.2 |
Inserted Chr. |
lll |
Insertional Mutation |
lethal |
Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Nitta Y, Yamazaki D, Sugie A, Hiroi M, Tabata T. DISCO Interacting Protein 2 regulates axonal bifurcation and guidance of Drosophila mushroom body neurons. Dev Biol (2017) 421(2) 233-244
[
PubMed ID = 27908785
]
[
RRC reference
]
Saj A, Arziman Z, Stempfle D, van Belle W, Sauder U, Horn T, Dürrenberger M, Paro R, Boutros M, Merdes G. A combined ex vivo and in vivo RNAi screen for notch regulators in Drosophila reveals an extensive notch interaction network. Dev Cell (2010) 18(5) 862-76
[
PubMed ID = 20493818
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgTCCCGAGGAGAAAATACCCAC |
Primer Seq. 3' |
aatctagaggtaccGTAATCGCAGACATCCTTGAG |
Predicted Fragment Size |
499 |
IR fragment full Seq |
0001 TCCCGAGGAG AAAATACCCA CCGAGCACAT CCTGGACGTG TCGCAGGTCA CCAAGCAGAC
0061 GCTCGGCGTA TTCTCGCACA TGGCACCGTC CGATGGCAAG GAGAACTCGA CTACCTCGGC
0121 GGCACAGCCG GATAACGAAA AGTTGTATAT GGAGGGCAGG ATTGTGCAAA AGCTAGAGTG
0181 CCGACCCATC GCCGACAACT GCTACATGAA ACTAAAGCTG GAGTCCATAC GCAAGGCATC
0241 GGAACCACAG CGACGTGTGC AGCCTATCGA CAAAATCGTG CAGAACTTTA AGCCTGTGAA
0301 AGACCATGCA CACAACATTG AATATCGGGA GCGAAAGAAG GCCGAGGGCA AGAAGGCGCG
0361 CGACGACAAG AATGCCGTGA TGGATATGCT CTTTCACGCA TTCGAGAAGC ATCAATACTA
0421 TAACATCAAG GATCTGGTCA AGATCACCAA CCAGCCGATT AGCTACCTGA AGGAGATTCT
0481 CAAGGATGTC TGCGATTAC |
in silico PCR Fragment |
0001 TCCCGAGGAG AAAATACCCA CCGAGCACAT CCTGGACGTG TCGCAGGTCA CCAAGCAGAC
0061 GCTCGGCGTA TTCTCGCACA TGGCACCGTC CGATGGCAAG GAGAACTCGA CTACCTCGGC
0121 GGCACAGCCG GATAACGAAA AGTTGTATAT GGAGGGCAGG ATTGTGCAAA AGCTAGAGTG
0181 CCGACCCATC GCCGACAACT GCTACATGAA ACTAAAGCTG GAGTCCATAC GCAAGGCATC
0241 GGAACCACAG CGACGTGTGC AGCCTATCGA CAAAATCGTG CAGAACTTTA AGCCTGTAAA
0301 AGACCACGCA CACAACATTG AATATCGGGA GCGAAAGAAG GCCGAGGGCA AGAAGGCGCG
0361 CGACGACAAG AATGCCGTGA TGGATATGCT CTTCCACGCA TTCGAGAAGC ATCAATACTA
0421 TAACATCAAG GATCTGGTCA AGATCACCAA CCAGCCGATT AGCTACCTGA AGGAGATTCT
0481 CAAGGATGTC TGCGATTAC |
Assemble Data |
6538R-3.IR_full 1 TCCCGAGGAGAAAATACCCACCGAGCACATCCTGGACGTGTCGCAGGTCACCAAGCAGAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
6538R-3.in silico 1 TCCCGAGGAGAAAATACCCACCGAGCACATCCTGGACGTGTCGCAGGTCACCAAGCAGAC 60
6538R-3.IR_full 61 GCTCGGCGTATTCTCGCACATGGCACCGTCCGATGGCAAGGAGAACTCGACTACCTCGGC 120
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6538R-3.in silico 61 GCTCGGCGTATTCTCGCACATGGCACCGTCCGATGGCAAGGAGAACTCGACTACCTCGGC 120
6538R-3.IR_full 121 GGCACAGCCGGATAACGAAAAGTTGTATATGGAGGGCAGGATTGTGCAAAAGCTAGAGTG 180
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6538R-3.in silico 121 GGCACAGCCGGATAACGAAAAGTTGTATATGGAGGGCAGGATTGTGCAAAAGCTAGAGTG 180
6538R-3.IR_full 181 CCGACCCATCGCCGACAACTGCTACATGAAACTAAAGCTGGAGTCCATACGCAAGGCATC 240
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6538R-3.in silico 181 CCGACCCATCGCCGACAACTGCTACATGAAACTAAAGCTGGAGTCCATACGCAAGGCATC 240
6538R-3.IR_full 241 GGAACCACAGCGACGTGTGCAGCCTATCGACAAAATCGTGCAGAACTTTAAGCCTGTGAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
6538R-3.in silico 241 GGAACCACAGCGACGTGTGCAGCCTATCGACAAAATCGTGCAGAACTTTAAGCCTGTAAA 300
6538R-3.IR_full 301 AGACCATGCACACAACATTGAATATCGGGAGCGAAAGAAGGCCGAGGGCAAGAAGGCGCG 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
6538R-3.in silico 301 AGACCACGCACACAACATTGAATATCGGGAGCGAAAGAAGGCCGAGGGCAAGAAGGCGCG 360
6538R-3.IR_full 361 CGACGACAAGAATGCCGTGATGGATATGCTCTTTCACGCATTCGAGAAGCATCAATACTA 420
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6538R-3.in silico 361 CGACGACAAGAATGCCGTGATGGATATGCTCTTCCACGCATTCGAGAAGCATCAATACTA 420
6538R-3.IR_full 421 TAACATCAAGGATCTGGTCAAGATCACCAACCAGCCGATTAGCTACCTGAAGGAGATTCT 480
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6538R-3.in silico 421 TAACATCAAGGATCTGGTCAAGATCACCAACCAGCCGATTAGCTACCTGAAGGAGATTCT 480
6538R-3.IR_full 481 CAAGGATGTCTGCGATTAC 499
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6538R-3.in silico 481 CAAGGATGTCTGCGATTAC 499
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
481 |
0 |
0 |
0 |
NM_079581.2 |
CG6538-RA (TfIIFbeta), mRNA |
0.41 |
2 |
3 |
4 |
7 |
NM_080013.2 |
CG6050-RA (EfTuM), mRNA |
0 |
0 |
4 |
5 |
4 |
NM_167895.1 |
CG12099-RA, transcript variant A (CG12099), mRNA |
0 |
0 |
4 |
5 |
4 |
NM_139366.2 |
CG12099-RB, transcript variant B (CG12099), mRNA |
0 |
0 |
3 |
4 |
6 |
NM_168715.1 |
CG7930-RB, transcript variant B (TpnC73F), mRNA |
0 |
0 |
3 |
4 |
6 |
NM_057374.2 |
CG3722-RA (shg), mRNA |
0 |
0 |
3 |
4 |
5 |
NM_079398.2 |
CG7930-RA, transcript variant A (TpnC73F), mRNA |
0 |
0 |
3 |
4 |
3 |
NM_057620.4 |
CG9073-RA (TpnC47D), mRNA |
0 |
0 |
2 |
4 |
4 |
NM_001031918.1 |
CG1410-RA, transcript variant A (waw), mRNA |
0 |
0 |
2 |
4 |
4 |
NM_001031917.1 |
CG1414-RB, transcript variant B (bbx), mRNA |
0 |
0 |
2 |
3 |
2 |
NM_140561.3 |
CG5931-RA (CG5931), mRNA |
0 |
0 |
1 |
6 |
6 |
NM_138200.2 |
CG12030-RA (CG12030), mRNA |
0 |
0 |
1 |
4 |
2 |
NM_137947.2 |
CG3530-RB, transcript variant B (CG3530), mRNA |
0 |
0 |
1 |
4 |
2 |
NM_166603.1 |
CG3530-RA, transcript variant A (CG3530), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_079684.3 |
CG4510-RA (Surf6), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_134744.1 |
CG14342-RA (CG14342), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_131987.2 |
CG4202-RA (Sas10), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_141657.2 |
CG8273-RA (CG8273), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_140997.2 |
CG11399-RB (CG11399), mRNA |
0 |
0 |
1 |
2 |
7 |
NM_142986.2 |
CG5720-RA (CG5720), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_137007.3 |
CG12765-RA (CG12765), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_176556.1 |
CG33106-RA, transcript variant A (mask), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_176557.1 |
CG33106-RB, transcript variant B (mask), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_138097.2 |
CG3548-RA (CG3548), mRNA |
0 |
0 |
0 |
7 |
8 |
NM_001031924.1 |
CG9130-RB, transcript variant B (CG9130), mRNA |
0 |
0 |
0 |
7 |
8 |
NM_001031925.1 |
CG9130-RA, transcript variant A (CG9130), mRNA |
0 |
0 |
0 |
7 |
8 |
NM_001031921.1 |
CG9133-RD, transcript variant D (CG9133), mRNA |
0 |
0 |
0 |
7 |
8 |
NM_001031923.1 |
CG9133-RC, transcript variant C (CG9133), mRNA |
0 |
0 |
0 |
7 |
8 |
NM_001031922.1 |
CG9133-RB, transcript variant B (CG9133), mRNA |
0 |
0 |
0 |
7 |
7 |
NM_132792.2 |
CG6227-RA (CG6227), mRNA |
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